Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 3.2e-169 598.6 363 100.0
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 7.0e-156 554.3 343 84.0
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.9e-113 413.3 326 83.1
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 8.1e-112 407.9 345 65.5
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 1.1e-111 407.5 332 81.9
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 1.2e-102 377.5 304 80.9
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 5.8e-102 375.2 317 80.1
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.6e-99 367.1 303 80.5
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.6e-99 367.1 303 80.5
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 5.1e-98 362.1 302 78.8
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 2.5e-97 359.8 299 79.6
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 5.6e-97 358.6 303 79.2
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 1.3e-96 357.5 299 80.3
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 2.8e-96 356.3 304 77.6
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 4.8e-96 355.5 312 75.6
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 6.2e-96 355.1 304 78.0
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 8.1e-96 354.8 303 79.5
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 1.1e-95 354.4 307 77.9
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 2.4e-95 353.2 303 76.9
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 6.9e-95 351.7 303 77.2
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.2e-94 350.9 303 77.6
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 1.5e-94 350.5 303 78.2
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 2.0e-94 350.1 303 77.9
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 4.5e-94 349.0 297 78.8
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 5.8e-94 348.6 298 77.5
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 9.9e-94 347.8 301 77.1
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 1.3e-93 347.4 303 76.2
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 1.3e-93 347.4 298 77.5
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 1.3e-93 347.4 325 72.6
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 1.7e-93 347.1 303 75.2
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 1.7e-93 347.1 301 76.1
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 3.8e-93 345.9 303 77.6
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 6.4e-93 345.1 301 77.1
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.1e-92 344.4 301 76.7
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 1.1e-92 344.4 300 75.3
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 3.2e-92 342.8 296 70.3
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 3.2e-92 342.8 303 77.2
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 4.2e-92 342.4 303 75.9
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 5.4e-92 342.0 303 76.9
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 9.3e-92 341.3 315 73.3
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 9.3e-92 341.3 303 76.9
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 1.6e-91 340.5 318 72.6
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 1.6e-91 340.5 298 76.5
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 2.7e-91 339.7 303 76.2
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 2.7e-91 339.7 295 77.6
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 4.6e-91 339.0 303 74.3
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 4.6e-91 339.0 305 74.4
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 6.0e-91 338.6 300 76.0
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 1.3e-90 337.4 300 76.7
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 1.8e-90 337.0 299 69.6
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 2.3e-90 336.7 317 71.3
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 2.3e-90 336.7 299 74.9
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 3.0e-90 336.3 323 70.6
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 3.9e-90 335.9 299 75.6
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 5.1e-90 335.5 300 74.7
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 6.7e-90 335.1 301 76.1
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 6.7e-90 335.1 341 67.7
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 8.7e-90 334.7 318 71.7
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 1.5e-89 334.0 317 70.7
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 7.4e-89 331.6 317 71.6
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 1.6e-88 330.5 341 67.7
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 2.1e-88 330.1 299 75.6
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 3.7e-88 329.3 304 72.7
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 3.7e-88 329.3 304 74.7
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 4.8e-88 328.9 316 70.6
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 4.0e-87 325.9 303 72.3
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 2.0e-86 323.6 304 72.7
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 5.8e-86 322.0 341 65.4
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 5.8e-86 322.0 299 72.9
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 1.3e-85 320.9 304 72.4
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 2.9e-85 319.7 304 73.0
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 6.4e-85 318.5 304 72.0
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 4.2e-84 315.8 305 70.8
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 1.2e-83 314.3 304 72.0
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 1.2e-83 314.3 304 71.1
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 7.9e-83 311.6 317 66.6
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 2.5e-81 306.6 302 70.5
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 4.3e-81 305.8 299 55.5
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 9.6e-81 304.7 305 69.8
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 3.7e-80 302.8 305 69.8
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 6.2e-80 302.0 305 69.8
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 8.2e-80 301.6 305 69.8
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 5.3e-79 298.9 298 70.5
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 9.0e-79 298.1 301 69.4
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 3.4e-78 296.2 299 70.2
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 5.5e-76 288.9 315 66.7
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 2.3e-74 283.5 303 68.3
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 1.1e-73 281.2 293 69.6
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 7.4e-73 278.5 304 66.8
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 7.4e-73 278.5 304 67.1
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 7.4e-73 278.5 304 67.1
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 6.3e-72 275.4 304 66.8
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 2.0e-70 270.4 298 64.1
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 7.7e-70 268.5 293 67.9
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 5.0e-69 265.8 304 65.1
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 1.4e-63 247.7 160 78.8
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 1.8e-63 247.3 299 48.5
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 2.2e-61 240.4 283 66.1
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 5.5e-60 235.7 211 80.6
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 3.5e-54 216.5 147 72.8
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 7.2e-52 208.8 112 92.0
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.0e-50 204.9 134 72.4
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 5.9e-46 189.1 142 64.1
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 3.2e-44 183.3 195 75.9
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 1.3e-40 171.4 104 79.8
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 8.0e-35 152.1 283 47.0
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 2.3e-34 150.6 261 52.5
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 3.5e-30 136.7 286 44.1
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 1.8e-26 124.4 334 30.5
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.8e-26 124.4 92 66.3
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 5.0e-21 106.3 79 65.8
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 2.1e-19 100.9 134 42.5
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 4.7e-19 99.8 78 62.8
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 1.8e-18 97.8 74 62.2
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 3.0e-13 80.5 118 40.7
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 3.6e-11 73.6 39 94.9
MBI02_g40094_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D027104 6.2e-11 72.8 39 94.9
SEGI_19840 Sequoiadendron giganteum HOM05D006642 ORTHO05D027104 8.9e-10 68.9 53 60.4
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 6.4e-08 62.8 125 28.0
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 1.4e-07 61.6 104 32.7
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 1.9e-07 61.2 125 27.2
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 4.1e-07 60.1 114 25.4
MBI04_g27244_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D009920 4.1e-07 60.1 104 32.7
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 5.4e-07 59.7 115 29.6
Aqoxy3G04282 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 9.2e-07 58.9 120 29.2
BraA01t00683Z Brassica rapa HOM05D006258 ORTHO05D007961 9.2e-07 58.9 120 30.8
C01p08100 Brassica napus HOM05D006258 ORTHO05D007961 1.2e-06 58.5 120 30.8
Peaxi162Scf00008g03911 Petunia axillaris HOM05D000891 ORTHO05D000761 1.6e-06 58.2 117 35.9
BolC1t00798H Brassica oleracea HOM05D006258 ORTHO05D007961 3.5e-06 57.0 120 30.0
AUR62007998 Chenopodium quinoa HOM05D000891 ORTHO05D000761 3.5e-06 57.0 115 31.3
A01p07350 Brassica napus HOM05D006258 ORTHO05D007961 4.6e-06 56.6 120 30.0
BcaC09g51872 Brassica carinata HOM05D006258 ORTHO05D007961 6.0e-06 56.2 120 30.0
Cc07_g09260 Coffea canephora HOM05D000891 ORTHO05D000761 6.0e-06 56.2 115 32.2
DCAR_025928 Daucus carota HOM05D000891 ORTHO05D000761 6.0e-06 56.2 118 34.7
Prupe.7G151800 Prunus persica HOM05D000891 ORTHO05D000761 7.8e-06 55.8 117 29.9
Solyc07g042720.1 Solanum lycopersicum HOM05D000001 ORTHO05D010419 7.8e-06 55.8 106 37.7


User provided reference genes

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