Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g199510 Amaranthus hybridus HOM05D002450 ORTHO05D002953 1.0e-88 330.1 174 100.0
Ah.02g112100 Amaranthus hybridus HOM05D002450 ORTHO05D002953 2.7e-41 172.6 105 89.5
AUR62024687 Chenopodium quinoa HOM05D002450 ORTHO05D002953 4.2e-34 148.7 127 66.1
AUR62011845 Chenopodium quinoa HOM05D002450 ORTHO05D002953 2.1e-33 146.4 108 75.9
EL10Ac2g04298 Beta vulgaris HOM05D002450 ORTHO05D002953 1.7e-30 136.7 131 61.8
Gohir.A01G121000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 6.3e-30 134.8 106 71.7
Ah.11g049460 Amaranthus hybridus HOM05D002450 ORTHO05D002953 3.1e-29 132.5 105 72.4
Gorai.002G132700 Gossypium raimondii HOM05D002450 ORTHO05D002953 4.1e-29 132.1 106 69.8
Duzib093G1995 Durio zibethinus HOM05D002450 ORTHO05D002953 2.7e-28 129.4 106 69.8
Hund26558 Selenicereus undatus HOM05D002450 ORTHO05D002953 1.7e-27 126.7 105 70.5
Gohir.D01G108500 Gossypium hirsutum HOM05D002450 ORTHO05D002953 2.3e-27 126.3 121 62.8
Manes.16G088600 Manihot esculenta HOM05D002450 ORTHO05D002953 2.9e-27 125.9 108 68.5
GSVIVG01009365001 Vitis vinifera HOM05D002450 ORTHO05D002953 3.8e-27 125.6 115 64.3
Haze_26082 Corylus avellana HOM05D002450 ORTHO05D002953 5.0e-27 125.2 106 69.8
QL12p037610 Quercus lobata HOM05D002450 ORTHO05D002953 6.5e-27 124.8 106 68.9
TWI74G0610 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 6.5e-27 124.8 105 66.7
TWI77G0253 Tripterygium wilfordii HOM05D002450 ORTHO05D002953 1.5e-26 123.6 105 67.6
Gohir.A05G263000 Gossypium hirsutum HOM05D002450 ORTHO05D002953 2.5e-26 122.9 108 66.7
Gorai.009G277000 Gossypium raimondii HOM05D002450 ORTHO05D002953 2.5e-26 122.9 108 66.7
Cc10_g05590 Coffea canephora HOM05D002450 ORTHO05D002953 4.2e-26 122.1 102 71.6
Manes.03G054700 Manihot esculenta HOM05D002450 ORTHO05D002953 5.5e-26 121.7 106 67.9
Cfa003416 Carpinus fangiana HOM05D002450 ORTHO05D002953 7.2e-26 121.3 106 67.9
Haze_25520 Corylus avellana HOM05D002450 ORTHO05D002953 7.2e-26 121.3 106 67.9
Sed0017090 Sechium edule HOM05D002450 ORTHO05D002953 7.2e-26 121.3 112 60.7
Nitab4.5_0000934g0090 Nicotiana tabacum HOM05D002450 ORTHO05D002953 1.2e-25 120.6 99 69.7
Sabra02G0094400 Salix brachista HOM05D002450 ORTHO05D002953 1.2e-25 120.6 106 67.0
CANSAT54G1944 Cannabis sativa HOM05D002450 ORTHO05D002953 1.6e-25 120.2 105 63.8
Solyc04g078050.3 Solanum lycopersicum HOM05D002450 ORTHO05D002953 1.6e-25 120.2 106 67.0
Sopen04g031640 Solanum pennellii HOM05D002450 ORTHO05D002953 1.6e-25 120.2 106 67.0
Thecc.08G091300 Theobroma cacao HOM05D002450 ORTHO05D002953 1.6e-25 120.2 108 65.7
EL10As5g23491 Beta vulgaris HOM05D002450 ORTHO05D002953 2.1e-25 119.8 108 67.6
Nitab4.5_0003228g0010 Nicotiana tabacum HOM05D002450 ORTHO05D002953 2.1e-25 119.8 99 68.7
Dinv44973 Davidia involucrata HOM05D002450 ORTHO05D002953 2.8e-25 119.4 103 67.0
RcHm_v2.0_Chr7g0216291 Rosa chinensis HOM05D002450 ORTHO05D002953 2.8e-25 119.4 104 64.4
CAN.G1054.28 Capsicum annuum HOM05D002450 ORTHO05D002953 3.6e-25 119.0 108 66.7
COL.COLO4_28529 Corchorus olitorius HOM05D002450 ORTHO05D002953 3.6e-25 119.0 106 65.1
Dinv39244 Davidia involucrata HOM05D002450 ORTHO05D002953 4.7e-25 118.6 102 68.6
Duzib041G0010 Durio zibethinus HOM05D002450 ORTHO05D002953 4.7e-25 118.6 86 76.7
Peaxi162Scf00081g01329 Petunia axillaris HOM05D002450 ORTHO05D002953 4.7e-25 118.6 99 67.7
Ciclev10000177m.g Citrus clementina HOM05D002450 ORTHO05D002953 8.0e-25 117.9 116 57.8
MD06G1005900 Malus domestica HOM05D002450 ORTHO05D002953 1.0e-24 117.5 116 58.6
Potri.014G018000 Populus trichocarpa HOM05D002450 ORTHO05D002953 1.0e-24 117.5 105 65.7
Lj4C69T6 Lonicera japonica HOM05D002450 ORTHO05D002953 1.4e-24 117.1 95 69.5
Potri.002G119900 Populus trichocarpa HOM05D002450 ORTHO05D002953 1.4e-24 117.1 106 67.0
Sed0009786 Sechium edule HOM05D002450 ORTHO05D002953 1.4e-24 117.1 110 59.1
Cpa.g.sc123.17 Carica papaya HOM05D002450 ORTHO05D002953 1.8e-24 116.7 116 56.9
Rhsim07G0221700 Rhododendron simsii HOM05D002450 ORTHO05D002953 1.8e-24 116.7 94 69.1
Actinidia10186 Actinidia chinensis HOM05D002450 ORTHO05D002953 3.0e-24 115.9 105 63.8
MSTRG.24365 Avicennia marina HOM05D002450 ORTHO05D002953 3.0e-24 115.9 94 71.3
Atru.chr13.809 Acer truncatum HOM05D002450 ORTHO05D002953 5.2e-24 115.2 97 67.0
Eucgr.C02521 Eucalyptus grandis HOM05D002450 ORTHO05D002953 5.2e-24 115.2 114 57.9
Gohir.D05G265200 Gossypium hirsutum HOM05D002450 ORTHO05D002953 5.2e-24 115.2 81 77.8
Sabra14G0011900 Salix brachista HOM05D002450 ORTHO05D002953 5.2e-24 115.2 104 64.4
vmacro22069 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 1.2e-23 114.0 94 68.1
vmacro22793 Vaccinium macrocarpon HOM05D002450 ORTHO05D002953 1.2e-23 114.0 94 68.1
Phvul.001G026300 Phaseolus vulgaris HOM05D002450 ORTHO05D002953 2.6e-23 112.8 102 62.7
SalBow1G6445 Salvia bowleyana HOM05D002450 ORTHO05D002953 2.6e-23 112.8 94 69.1
CSS0019848 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 4.4e-23 112.1 105 64.8
Prupe.5G007400 Prunus persica HOM05D002450 ORTHO05D002953 4.4e-23 112.1 118 57.6
Prupe.6G138300 Prunus persica HOM05D002450 ORTHO05D002953 5.7e-23 111.7 120 57.5
Actinidia22682 Actinidia chinensis HOM05D002450 ORTHO05D002953 7.5e-23 111.3 105 62.9
Eucgr.F02266 Eucalyptus grandis HOM05D002450 ORTHO05D002953 9.8e-23 110.9 112 58.0
PGR031G3734 Punica granatum HOM05D002450 ORTHO05D002953 9.8e-23 110.9 114 59.6
CDE07G0359 Ceratophyllum demersum HOM05D002450 ORTHO05D002953 1.3e-22 110.5 108 58.3
HPP92_026568 Vanilla planifolia HOM05D002450 ORTHO05D002953 1.7e-22 110.2 107 61.7
Aa31LG9G13220 Aethionema arabicum HOM05D002450 ORTHO05D002953 2.2e-22 109.8 105 59.0
Ca_15910_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 2.2e-22 109.8 103 64.1
Sc05g0001410 Simmondsia chinensis HOM05D002450 ORTHO05D002953 2.2e-22 109.8 107 63.6
Aqoxy1G00817 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 3.7e-22 109.0 105 61.0
Thhalv10003149m.g Eutrema salsugineum HOM05D002450 ORTHO05D002953 4.9e-22 108.6 119 53.8
Lj4A760T37 Lonicera japonica HOM05D002450 ORTHO05D002953 4.9e-22 108.6 105 61.0
Migut.N02766 Erythranthe guttata HOM05D002450 ORTHO05D002953 6.3e-22 108.2 109 62.4
Carub.0008s0559 Capsella rubella HOM05D002450 ORTHO05D002953 8.3e-22 107.8 114 56.1
Glyma.04G044700 Glycine max HOM05D002450 ORTHO05D002953 8.3e-22 107.8 86 69.8
Glyma.06G045200 Glycine max HOM05D002450 ORTHO05D002953 8.3e-22 107.8 86 69.8
AT5G43130 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 1.1e-21 107.5 119 52.1
AL8G17530 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 1.4e-21 107.1 114 55.3
THA.LOC104812586 Tarenaya hassleriana HOM05D002450 ORTHO05D002953 1.4e-21 107.1 104 60.6
Ca_25258_v3 Cicer arietinum L. HOM05D002450 ORTHO05D002953 1.8e-21 106.7 104 63.5
Glyma.14G087700 Glycine max HOM05D002450 ORTHO05D002953 1.8e-21 106.7 130 51.5
Lalb_Chr14g0368301 Lupinus albus HOM05D002450 ORTHO05D002953 1.8e-21 106.7 110 56.4
Sc24g0003290 Simmondsia chinensis HOM05D002450 ORTHO05D002953 1.8e-21 106.7 102 62.7
BraA06t27673Z Brassica rapa HOM05D002450 ORTHO05D002953 2.4e-21 106.3 105 59.0
Glyma.17G236600 Glycine max HOM05D002450 ORTHO05D002953 3.1e-21 105.9 103 60.2
Sp2g07910 Schrenkiella parvula HOM05D002450 ORTHO05D002953 3.1e-21 105.9 105 59.0
Aqoxy2G03346 Aquilegia oxysepala HOM05D002450 ORTHO05D002953 4.1e-21 105.5 116 54.3
A06p48030 Brassica napus HOM05D002450 ORTHO05D002953 4.1e-21 105.5 119 52.9
Rhsim06G0060700 Rhododendron simsii HOM05D002450 ORTHO05D002953 4.1e-21 105.5 84 69.0
FAN18G3361 Fragaria x ananassa HOM05D002450 ORTHO05D002953 5.4e-21 105.1 120 57.5
HanXRQChr06g0184031 Helianthus annuus HOM05D002450 ORTHO05D002953 5.4e-21 105.1 95 69.5
FvH4_5g25820 Fragaria vesca HOM05D002450 ORTHO05D002953 7.0e-21 104.8 106 62.3
FAN13G2461 Fragaria x ananassa HOM05D002450 ORTHO05D002953 7.0e-21 104.8 121 57.9
VMungo0647G0877 Vigna mungo HOM05D002450 ORTHO05D002953 7.0e-21 104.8 102 58.8
Oeu034510.1 Olea europaea HOM05D002450 ORTHO05D002953 9.2e-21 104.4 106 62.3
FAN08G0311 Fragaria x ananassa HOM05D002450 ORTHO05D002953 1.2e-20 104.0 120 56.7
CARHR180850 Cardamine hirsuta HOM05D002450 ORTHO05D002953 1.6e-20 103.6 106 54.7
Medtr3g102840 Medicago truncatula HOM05D002450 ORTHO05D002953 1.6e-20 103.6 92 67.4
SEGI_26944 Sequoiadendron giganteum HOM05D002450 ORTHO05D002953 1.6e-20 103.6 112 56.2
TAR625G0542 Trochodendron aralioides HOM05D002450 ORTHO05D002953 1.6e-20 103.6 106 60.4
BcaB07g30594 Brassica carinata HOM05D002450 ORTHO05D002953 2.7e-20 102.8 119 52.9
CDE04G2133 Ceratophyllum demersum HOM05D002450 ORTHO05D002953 2.7e-20 102.8 93 61.3
ECA232G4701 Erigeron canadensis HOM05D002450 ORTHO05D002953 2.7e-20 102.8 102 62.7
FAN04G2208 Fragaria x ananassa HOM05D002450 ORTHO05D002953 3.5e-20 102.4 106 61.3
MD03G1150900 Malus domestica HOM05D002450 ORTHO05D002953 3.5e-20 102.4 114 56.1
Nitab4.5_0000197g0100 Nicotiana tabacum HOM05D002450 ORTHO05D002953 3.5e-20 102.4 91 64.8
SHI19397 Sapria himalayana HOM05D002450 ORTHO05D002953 5.9e-20 101.7 129 48.1
Lj1g0026999 Lotus japonicus HOM05D002450 ORTHO05D002953 7.8e-20 101.3 97 58.8
Oeu057366.3 Olea europaea HOM05D002450 ORTHO05D002953 7.8e-20 101.3 102 61.8
SGA_v2.0_scaffold14G06941 Striga asiatica HOM05D002450 ORTHO05D002953 7.8e-20 101.3 147 48.3
BolC7t43088H Brassica oleracea HOM05D002450 ORTHO05D002953 1.0e-19 100.9 148 43.9
Zm00001eb020720 Zea mays HOM05D002450 ORTHO05D002953 1.0e-19 100.9 127 48.8
DCAR_008851 Daucus carota HOM05D002450 ORTHO05D002953 1.3e-19 100.5 108 58.3
Lsat_1_v5_gn_4_130920 Lactuca sativa HOM05D002450 ORTHO05D002953 2.3e-19 99.8 104 62.5
A02p27680 Brassica napus HOM05D002450 ORTHO05D002953 3.8e-19 99.0 119 50.4
TPR.G35644 Trifolium pratense HOM05D002450 ORTHO05D002953 3.8e-19 99.0 103 58.3
BraA02t07807Z Brassica rapa HOM05D002450 ORTHO05D002953 6.6e-19 98.2 100 58.0
BcaC06g34680 Brassica carinata HOM05D002450 ORTHO05D002953 1.1e-18 97.4 119 48.7
C07p25690 Brassica napus HOM05D002450 ORTHO05D002953 1.1e-18 97.4 119 48.7
Thecc.01G353600 Theobroma cacao HOM05D002450 ORTHO05D002953 4.3e-18 95.5 100 54.0
Atru.chr9.2196 Acer truncatum HOM05D002450 ORTHO05D002953 5.6e-18 95.1 97 60.8
DCAR_012809 Daucus carota HOM05D002450 ORTHO05D002953 1.2e-17 94.0 94 61.7
TPR.G2904 Trifolium pratense HOM05D002450 ORTHO05D002953 1.2e-17 94.0 103 56.3
Lalb_Chr24g0399411 Lupinus albus HOM05D002450 ORTHO05D002953 2.1e-17 93.2 103 55.3
arahy.Tifrunner.gnm1.ann1.Z5BLZE Arachis hypogaea HOM05D002450 ORTHO05D002953 2.8e-17 92.8 96 60.4
TAR381G1265 Trochodendron aralioides HOM05D002450 ORTHO05D002953 4.7e-17 92.0 102 53.9
AagrBONN_evm.TU.Sc2ySwM_228.2387 Anthoceros agrestis HOM05D002450 ORTHO05D002953 8.0e-17 91.3 116 49.1
BolC2t10422H Brassica oleracea HOM05D002450 ORTHO05D002953 1.8e-16 90.1 119 49.6
CiPaw.07G177000 Carya illinoinensis HOM05D002450 ORTHO05D002953 1.8e-16 90.1 119 52.1
BcaC03g16563 Brassica carinata HOM05D002450 ORTHO05D002953 4.0e-16 89.0 119 48.7
C02p43760 Brassica napus HOM05D002450 ORTHO05D002953 4.0e-16 89.0 119 48.7
HanXRQChr09g0266561 Helianthus annuus HOM05D002450 ORTHO05D002953 4.0e-16 89.0 95 58.9
arahy.Tifrunner.gnm1.ann1.27GD0X Arachis hypogaea HOM05D002450 ORTHO05D002953 5.2e-16 88.6 96 58.3
CARHR027220 Cardamine hirsuta HOM05D002450 ORTHO05D002953 8.9e-16 87.8 82 61.0
arahy.Tifrunner.gnm1.ann1.94F500 Arachis hypogaea HOM05D002450 ORTHO05D002953 1.2e-15 87.4 96 58.3
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 2.6e-15 86.3 80 62.5
Nn5g30523 Nelumbo nucifera HOM05D002450 ORTHO05D002953 4.4e-15 85.5 78 66.7
Os03g0441000 Oryza sativa ssp. japonica HOM05D002450 ORTHO05D002953 5.8e-15 85.1 84 57.1
MELO3C003391.2 Cucumis melo HOM05D002450 ORTHO05D002953 9.8e-15 84.3 72 65.3
Mapoly0015s0206 Marchantia polymorpha HOM05D002450 ORTHO05D002953 1.7e-14 83.6 122 47.5
Psat5g038160 Pisum sativum HOM05D002450 ORTHO05D002953 1.7e-14 83.6 80 60.0
BcaC06g31721 Brassica carinata HOM05D002450 ORTHO05D002953 2.2e-14 83.2 120 45.8
ClCG09G012130 Citrullus lanatus HOM05D002450 ORTHO05D002953 2.2e-14 83.2 98 51.0
CsaV3_3G049350 Cucumis sativus L. HOM05D002450 ORTHO05D002953 2.9e-14 82.8 66 68.2
HanXRQChr17g0568081 Helianthus annuus HOM05D002450 ORTHO05D002953 2.9e-14 82.8 100 58.0
HanXRQChr17g0568561 Helianthus annuus HOM05D002450 ORTHO05D002953 2.9e-14 82.8 124 49.2
CSS0035270 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 1.1e-13 80.9 73 65.8
arahy.Tifrunner.gnm1.ann1.XWQ1KT Arachis hypogaea HOM05D002450 ORTHO05D002953 1.4e-13 80.5 95 56.8
Lj5g0004805 Lotus japonicus HOM05D002450 ORTHO05D002953 1.4e-13 80.5 102 51.0
Nn1g04614 Nelumbo nucifera HOM05D002450 ORTHO05D002953 1.4e-13 80.5 95 55.8
AL1G41250 Arabidopsis lyrata HOM05D002450 ORTHO05D002953 1.8e-13 80.1 103 50.5
AT1G27720 Arabidopsis thaliana HOM05D002450 ORTHO05D002953 1.8e-13 80.1 103 51.5
Carub.0001s2623 Capsella rubella HOM05D002450 ORTHO05D002953 1.8e-13 80.1 109 46.8
CSS0033445 Camellia sinensis var. sinensis HOM05D002450 ORTHO05D002953 2.4e-13 79.7 73 64.4
HPP92_012495 Vanilla planifolia HOM05D002450 ORTHO05D002953 2.4e-13 79.7 123 44.7
Zm00001eb123350 Zea mays HOM05D002450 ORTHO05D002953 2.4e-13 79.7 95 51.6
ATR0665G484 Amborella trichopoda HOM05D002450 ORTHO05D002953 3.2e-13 79.3 97 50.5
Pp3c4_10340 Physcomitrium patens HOM05D002450 ORTHO05D002953 4.1e-13 79.0 76 57.9
PGR031G1138 Punica granatum HOM05D002450 ORTHO05D002953 7.0e-13 78.2 103 45.6
PSO541G0144 Papaver somniferum HOM05D002450 ORTHO05D002953 9.2e-13 77.8 77 58.4
PSO675G5640 Papaver somniferum HOM05D002450 ORTHO05D002953 9.2e-13 77.8 77 58.4
RcHm_v2.0_Chr1g0327781 Rosa chinensis HOM05D002450 ORTHO05D002953 9.2e-13 77.8 82 59.8
Cpa.g.sc21.108 Carica papaya HOM05D002450 ORTHO05D002953 2.0e-12 76.6 84 57.1
HanXRQChr17g0568431 Helianthus annuus HOM05D002450 ORTHO05D002953 6.0e-12 75.1 119 47.1
Thhalv10009915m.g Eutrema salsugineum HOM05D002450 ORTHO05D002953 1.0e-11 74.3 118 43.2
AagrBONN_evm.TU.Sc2ySwM_368.1787 Anthoceros agrestis HOM05D002450 ORTHO05D002953 1.1e-10 70.9 88 51.1
Dinv15791 Davidia involucrata HOM05D002450 ORTHO05D002953 1.9e-10 70.1 116 40.5
Os02g0654400 Oryza sativa ssp. japonica HOM05D002450 ORTHO05D002953 9.5e-10 67.8 60 58.3
MBI14_g43560_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 2.1e-09 66.6 73 54.8
BcaC06g35313 Brassica carinata HOM05D002450 ORTHO05D002953 1.4e-08 63.9 143 34.3
C07p17530 Brassica napus HOM05D002450 ORTHO05D002953 1.4e-08 63.9 143 34.3
BolC7t42261H Brassica oleracea HOM05D002450 ORTHO05D002953 1.4e-08 63.9 143 34.3
MBI15_g46857_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 1.4e-08 63.9 76 50.0
PSO210G7461 Papaver somniferum HOM05D002450 ORTHO05D002953 3.1e-08 62.8 80 46.2
MBI15_g43330_MAGBIO Magnolia biondii HOM05D002450 ORTHO05D002953 6.8e-08 61.6 115 40.9
Migut.C00497 Erythranthe guttata HOM05D002450 ORTHO05D002953 1.2e-07 60.8 69 56.5
PSO210G4345 Papaver somniferum HOM05D002450 ORTHO05D002953 1.2e-07 60.8 80 45.0
BcaB03g13972 Brassica carinata HOM05D002450 ORTHO05D002953 2.0e-07 60.1 118 35.6
BraA07t28949Z Brassica rapa HOM05D002450 ORTHO05D002953 3.4e-07 59.3 143 32.9
A07p11620 Brassica napus HOM05D002450 ORTHO05D002953 4.4e-07 58.9 143 32.9
Sp1g23950 Schrenkiella parvula HOM05D002450 ORTHO05D002953 2.9e-06 56.2 67 49.3
C04p24690 Brassica napus HOM05D002450 ORTHO05D002953 4.9e-06 55.5 72 48.6
ECA232G4759 Erigeron canadensis HOM05D002450 ORTHO05D002953 8.3e-06 54.7 69 55.1
SHI34214 Sapria himalayana HOM05D000442 ORTHO05D001242 8.3e-06 54.7 54 55.6


User provided reference genes

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