Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 0.0e+00 1186.8 595 100.0
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 3.1e-278 961.4 585 83.4
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 4.1e-278 961.1 591 82.6
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 6.1e-274 947.2 618 78.8
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 6.1e-274 947.2 618 78.8
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 7.0e-262 907.1 594 79.8
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.2e-261 906.4 593 79.9
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 1.5e-261 906.0 595 78.2
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 1.3e-260 902.9 596 77.5
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 3.8e-260 901.4 616 76.3
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 6.5e-260 900.6 616 76.3
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 1.9e-259 899.0 590 78.5
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 5.5e-259 897.5 588 77.0
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 7.2e-259 897.1 596 77.9
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 3.6e-258 894.8 569 80.0
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 6.1e-258 894.0 590 77.8
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 6.1e-258 894.0 591 78.2
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 1.0e-257 893.3 594 76.9
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 1.8e-257 892.5 593 77.4
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 3.0e-257 891.7 588 77.4
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 6.7e-257 890.6 589 77.4
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 6.7e-257 890.6 601 76.7
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 2.6e-256 888.6 593 77.9
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 2.6e-256 888.6 519 85.0
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 4.4e-256 887.9 587 78.2
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 4.4e-256 887.9 589 77.6
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 4.4e-256 887.9 594 76.6
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 4.4e-256 887.9 542 81.9
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 5.7e-256 887.5 569 78.9
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 7.4e-256 887.1 593 76.9
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 7.4e-256 887.1 584 76.7
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 9.7e-256 886.7 584 77.6
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 9.7e-256 886.7 584 77.9
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 2.8e-255 885.2 569 79.6
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 2.8e-255 885.2 593 76.9
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 2.8e-255 885.2 595 76.8
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 8.2e-255 883.6 605 75.4
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 1.1e-254 883.2 564 79.6
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 1.4e-254 882.9 599 76.8
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 1.4e-254 882.9 587 78.0
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 3.1e-254 881.7 560 80.0
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 5.3e-254 880.9 598 76.6
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 1.2e-253 879.8 597 76.4
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 2.0e-253 879.0 571 77.8
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 4.5e-253 877.9 597 75.4
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 2.2e-252 875.5 588 77.0
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 2.2e-252 875.5 594 75.4
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 6.5e-252 874.0 603 75.1
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 1.1e-251 873.2 555 78.7
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 1.5e-251 872.8 593 75.4
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 5.5e-251 870.9 591 75.0
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 8.0e-250 867.1 597 74.5
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 1.0e-249 866.7 593 74.9
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 1.4e-249 866.3 598 75.6
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 1.8e-249 865.9 589 74.7
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 4.0e-249 864.8 598 75.1
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 6.8e-249 864.0 591 76.1
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 2.6e-248 862.1 567 77.2
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 4.4e-248 861.3 595 75.1
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 4.4e-248 861.3 588 75.0
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 5.7e-248 860.9 575 75.8
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 1.3e-247 859.8 655 69.6
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 1.7e-247 859.4 591 74.6
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 3.7e-247 858.2 563 76.4
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 6.3e-247 857.4 558 77.6
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 6.3e-247 857.4 558 77.6
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 1.1e-246 856.7 577 76.1
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 3.1e-246 855.1 515 81.6
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 4.1e-246 854.7 520 81.3
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 5.3e-246 854.4 596 75.7
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 4.5e-245 851.3 592 73.8
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 2.2e-244 849.0 586 74.2
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 9.4e-243 843.6 629 69.8
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 1.6e-242 842.8 602 72.8
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 2.7e-242 842.0 571 75.7
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 1.5e-240 836.3 551 76.4
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 4.1e-238 828.2 591 74.3
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 1.6e-237 826.2 548 76.3
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 2.3e-236 822.4 581 74.5
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 2.5e-235 818.9 591 73.1
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 5.5e-235 817.8 592 72.8
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 4.7e-234 814.7 564 75.2
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 3.0e-233 812.0 588 73.1
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 1.7e-231 806.2 584 70.4
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 2.8e-231 805.4 676 64.5
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 6.3e-231 804.3 796 57.3
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 4.1e-230 801.6 653 66.3
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 2.0e-229 799.3 590 71.4
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 7.8e-229 797.3 587 72.1
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 3.6e-226 788.5 527 76.1
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 6.8e-225 784.3 530 73.8
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 7.0e-222 774.2 522 73.4
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 1.3e-220 770.0 497 78.7
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 1.2e-210 736.9 435 84.1
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 3.4e-208 728.8 518 70.1
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 8.6e-204 714.1 523 68.1
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 1.1e-193 680.6 433 77.8
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 2.6e-192 676.0 514 69.1
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 2.9e-191 672.5 497 66.2
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 2.4e-190 669.5 414 80.4
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 4.6e-189 665.2 398 82.4
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 1.3e-188 663.7 398 82.7
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 1.9e-182 643.3 398 79.6
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 5.1e-180 635.2 446 74.2
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 1.5e-179 633.6 432 75.2
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 2.6e-144 516.5 265 93.6
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.0e-140 504.6 356 72.8
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 1.8e-140 503.8 391 67.8
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 6.3e-130 468.8 248 90.3
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 1.8e-124 450.7 250 86.0
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 7.0e-121 438.7 528 44.7
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 5.6e-110 402.5 530 42.5
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 3.7e-98 363.2 382 55.5
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 8.3e-98 362.1 502 41.0
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 1.2e-93 348.2 534 40.6
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 2.4e-81 307.4 172 87.8
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 8.4e-66 255.8 194 66.0
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 1.3e-53 215.3 136 77.9
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 1.3e-53 215.3 200 62.0
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.4e-52 211.8 195 53.8
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 3.8e-50 203.8 102 96.1
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 6.9e-44 183.0 104 87.5
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 4.2e-41 173.7 182 50.5
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 9.4e-41 172.6 191 50.3
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 3.6e-40 170.6 96 84.4
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 6.1e-40 169.9 143 60.8
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 1.5e-38 165.2 252 44.0
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.5e-35 155.2 113 69.0
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 7.2e-33 146.4 83 84.3
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 6.7e-31 139.8 70 94.3
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 5.7e-30 136.7 71 78.9
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 3.8e-18 97.4 60 75.0
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 3.8e-18 97.4 60 76.7
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 3.2e-17 94.4 71 66.2
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 2.7e-16 91.3 60 75.0
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 4.7e-16 90.5 49 71.4
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 1.2e-14 85.9 50 70.0
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 6.3e-13 80.1 75 62.7
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 1.2e-08 65.9 106 38.7
Cpa.g.c37459 Carica papaya HOM05D005018 ORTHO05D043556 4.4e-06 57.4 27 96.3


User provided reference genes

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