Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 2.2e-160 568.9 287 100.0
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 3.0e-138 495.4 289 88.6
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 7.5e-137 490.7 282 89.7
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 2.8e-136 488.8 290 86.9
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 3.3e-132 475.3 289 84.4
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.4e-129 465.3 317 79.2
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.9e-127 459.5 293 81.6
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.2e-126 456.8 294 81.3
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.6e-126 456.4 290 81.4
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 2.7e-126 455.7 284 82.4
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 3.5e-126 455.3 296 80.4
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 3.5e-126 455.3 294 81.0
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 6.0e-126 454.5 295 79.0
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.0e-125 453.8 295 79.0
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 1.7e-125 453.0 292 81.2
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 1.7e-125 453.0 292 81.2
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 1.7e-125 453.0 300 80.3
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 2.3e-125 452.6 305 77.7
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 2.3e-125 452.6 298 78.9
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.0e-125 452.2 283 81.3
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 3.9e-125 451.8 283 82.0
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 5.0e-125 451.4 289 80.3
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.1e-124 450.3 306 76.8
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 3.3e-124 448.7 298 78.5
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 3.3e-124 448.7 282 81.6
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 4.3e-124 448.4 300 78.0
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 4.3e-124 448.4 282 80.9
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 9.5e-124 447.2 284 80.6
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.2e-123 446.8 284 80.3
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.2e-123 446.8 281 81.1
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 3.6e-123 445.3 282 80.5
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 3.6e-123 445.3 283 81.3
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 4.7e-123 444.9 281 81.1
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 4.7e-123 444.9 284 81.3
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 6.2e-123 444.5 296 78.4
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 8.0e-123 444.1 311 76.2
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.0e-123 444.1 289 78.9
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 1.4e-122 443.4 282 81.2
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 1.8e-122 443.0 282 80.1
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.3e-122 442.6 289 78.5
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 3.1e-122 442.2 281 80.4
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 3.1e-122 442.2 281 80.4
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 5.2e-122 441.4 295 76.6
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 5.2e-122 441.4 301 76.1
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 6.8e-122 441.0 301 76.4
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 8.9e-122 440.7 281 81.1
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.9e-122 440.7 289 78.9
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 1.2e-121 440.3 283 79.9
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 2.6e-121 439.1 283 79.5
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 4.4e-121 438.3 283 80.6
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 2.2e-120 436.0 299 77.3
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.7e-120 435.3 296 76.4
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.9e-120 434.9 297 76.4
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 6.4e-120 434.5 292 78.4
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 6.4e-120 434.5 307 75.6
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 8.3e-120 434.1 282 79.8
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 8.3e-120 434.1 294 78.6
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 8.3e-120 434.1 292 76.4
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 2.4e-119 432.6 291 76.6
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.2e-119 432.2 326 71.5
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 4.1e-119 431.8 296 76.4
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.2e-118 430.3 331 70.4
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 6.0e-118 427.9 306 74.5
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.3e-117 426.8 284 76.4
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 1.3e-117 426.8 276 79.0
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 2.3e-117 426.0 284 78.5
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 3.9e-117 425.2 293 75.4
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 3.9e-117 425.2 335 69.3
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 5.1e-117 424.9 311 72.3
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 6.6e-117 424.5 287 77.4
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.1e-116 423.7 302 73.5
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 1.1e-116 423.7 287 77.0
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 1.1e-116 423.7 299 73.9
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 9.5e-116 420.6 301 72.8
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 9.5e-116 420.6 305 74.4
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 2.1e-115 419.5 301 73.4
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 2.1e-115 419.5 300 72.7
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 2.1e-115 419.5 300 72.7
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 6.2e-115 417.9 298 74.2
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 1.1e-114 417.2 305 72.1
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.1e-114 417.2 284 77.1
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 1.4e-114 416.8 319 69.6
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 6.8e-114 414.5 291 74.9
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 6.8e-114 414.5 299 74.6
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 6.8e-114 414.5 291 73.2
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 8.9e-114 414.1 307 71.0
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 2.6e-113 412.5 289 74.7
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 2.6e-113 412.5 286 76.2
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.8e-113 411.4 276 75.4
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.3e-112 410.2 303 72.3
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.3e-112 410.2 303 72.3
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 1.7e-112 409.8 286 75.9
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 1.7e-112 409.8 282 74.5
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 3.7e-112 408.7 285 74.0
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 3.7e-112 408.7 282 75.5
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 1.4e-111 406.8 289 75.4
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 5.4e-111 404.8 307 72.3
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 7.1e-111 404.4 267 79.0
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 1.2e-110 403.7 332 68.7
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 1.6e-110 403.3 317 69.7
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.1e-109 398.3 289 70.2
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 4.3e-108 395.2 288 72.2
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 6.2e-107 391.3 343 65.0
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 1.1e-106 390.6 288 69.8
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.5e-105 386.7 287 69.7
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 2.6e-105 386.0 285 69.8
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 3.3e-100 369.0 224 83.5
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 7.3e-100 367.9 230 81.7
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.2e-97 360.5 273 68.5
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 9.9e-97 357.5 226 78.8
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 7.3e-92 341.3 299 64.5
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.3e-91 340.5 301 64.1
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 2.1e-91 339.7 262 67.6
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.8e-90 336.7 287 65.5
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.4e-90 336.3 250 70.8
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 4.0e-90 335.5 283 66.4
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 6.7e-85 318.2 227 73.6
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 5.6e-84 315.1 178 86.0
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 7.4e-84 314.7 299 56.5
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 1.3e-83 313.9 290 58.6
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.5e-81 307.0 295 56.9
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.6e-81 304.7 255 64.3
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.2e-80 303.1 214 76.2
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 1.2e-78 297.4 272 60.3
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.6e-78 297.0 308 54.9
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.0e-74 282.3 223 65.9
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 1.5e-73 280.4 273 54.9
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 4.6e-70 268.9 190 77.4
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.8e-69 266.9 199 72.9
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 8.5e-64 248.1 191 68.6
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.4e-63 247.3 190 70.5
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 4.3e-60 235.7 253 56.5
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.6e-52 209.9 155 72.9
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 3.5e-49 199.5 111 83.8
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 5.5e-47 192.2 108 85.2
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 9.4e-47 191.4 110 82.7
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 3.1e-42 176.4 106 79.2
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 1.6e-41 174.1 115 75.7
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 4.7e-38 162.5 150 60.7
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 8.8e-37 158.3 276 37.3
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 1.2e-36 157.9 125 71.2
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 3.7e-35 152.9 95 77.9
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 2.4e-34 150.2 79 88.6
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 1.1e-31 141.4 275 32.0
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 1.2e-30 137.9 104 67.3
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 1.4e-29 134.4 103 71.8
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.5e-28 131.0 220 39.1
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 3.4e-28 129.8 119 61.3
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 3.4e-28 129.8 119 61.3
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 1.3e-27 127.9 186 44.1
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 2.8e-27 126.7 186 43.5
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.8e-26 124.0 106 64.2
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 1.8e-26 124.0 180 44.4
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 1.2e-25 121.3 119 58.8
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 1.2e-25 121.3 255 29.8
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 1.6e-25 120.9 119 58.8
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 1.7e-24 117.5 119 58.0
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 3.0e-21 106.7 70 77.1
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 4.0e-21 106.3 156 41.0
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.5e-20 104.4 156 41.0
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.3e-19 101.3 274 28.5
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 1.7e-19 100.9 156 40.4
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 2.2e-19 100.5 146 43.8
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.8e-19 100.1 52 92.3
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 7.3e-15 85.5 48 83.3
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 1.8e-13 80.9 46 76.1


User provided reference genes

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