Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 2.6e-68 261.9 130 100.0
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.5e-55 218.8 120 90.0
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 2.5e-55 218.8 121 88.4
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 3.3e-55 218.4 120 89.2
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 3.3e-55 218.4 120 87.5
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 5.5e-55 217.6 120 87.5
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 5.5e-55 217.6 120 87.5
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 7.2e-55 217.2 119 88.2
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 9.5e-55 216.9 119 88.2
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 9.5e-55 216.9 119 87.4
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 9.5e-55 216.9 124 84.7
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.2e-54 216.5 119 88.2
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 1.2e-54 216.5 120 87.5
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 2.1e-54 215.7 119 89.1
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 2.8e-54 215.3 121 86.0
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 3.6e-54 214.9 119 87.4
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 6.1e-54 214.2 124 82.3
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 8.0e-54 213.8 119 86.6
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 8.0e-54 213.8 120 85.0
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 8.0e-54 213.8 120 85.0
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 1.0e-53 213.4 119 85.7
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 1.0e-53 213.4 120 83.3
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 1.4e-53 213.0 120 85.0
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.8e-53 212.6 119 86.6
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 2.3e-53 212.2 119 85.7
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 2.3e-53 212.2 120 83.3
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 2.3e-53 212.2 131 78.6
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 3.0e-53 211.8 119 85.7
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 4.0e-53 211.5 120 84.2
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 6.8e-53 210.7 120 84.2
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 8.9e-53 210.3 131 78.6
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 8.9e-53 210.3 120 83.3
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 1.5e-52 209.5 119 84.9
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 1.5e-52 209.5 119 84.9
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 1.5e-52 209.5 119 84.9
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 1.5e-52 209.5 119 84.9
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 2.6e-52 208.8 120 84.2
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 2.6e-52 208.8 124 82.3
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 3.4e-52 208.4 124 80.6
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 3.4e-52 208.4 119 84.0
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 4.4e-52 208.0 120 82.5
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 5.7e-52 207.6 119 83.2
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 5.7e-52 207.6 120 81.7
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 5.7e-52 207.6 120 83.3
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 5.7e-52 207.6 119 83.2
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 7.5e-52 207.2 119 83.2
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 7.5e-52 207.2 119 83.2
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 1.3e-51 206.5 121 81.0
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 1.3e-51 206.5 128 78.9
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.3e-51 206.5 120 83.3
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.7e-51 206.1 119 83.2
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.7e-51 206.1 119 83.2
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 1.7e-51 206.1 124 79.0
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 2.2e-51 205.7 124 80.6
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 2.8e-51 205.3 120 81.7
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 2.8e-51 205.3 119 84.9
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 2.8e-51 205.3 124 80.6
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 3.7e-51 204.9 119 79.8
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 3.7e-51 204.9 117 83.8
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 4.9e-51 204.5 129 77.5
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 6.3e-51 204.1 129 76.0
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 8.3e-51 203.8 119 79.8
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 8.3e-51 203.8 120 80.8
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 8.3e-51 203.8 119 80.7
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 8.3e-51 203.8 125 79.2
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 1.1e-50 203.4 135 77.0
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 1.1e-50 203.4 119 81.5
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 1.4e-50 203.0 118 82.2
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 1.8e-50 202.6 119 80.7
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 2.4e-50 202.2 119 80.7
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 5.4e-50 201.1 119 80.7
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 7.0e-50 200.7 120 80.0
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 9.2e-50 200.3 119 79.0
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 1.2e-49 199.9 120 79.2
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 1.2e-49 199.9 120 79.2
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 1.6e-49 199.5 120 79.2
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 1.6e-49 199.5 120 79.2
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 1.6e-49 199.5 120 79.2
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 2.0e-49 199.1 118 79.7
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 2.0e-49 199.1 118 78.0
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 2.0e-49 199.1 129 74.4
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 4.5e-49 198.0 120 78.3
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 7.8e-49 197.2 118 77.1
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 1.0e-48 196.8 119 79.8
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 1.1e-47 193.4 117 78.6
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 1.5e-47 193.0 120 74.2
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 2.5e-47 192.2 157 63.1
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 3.3e-47 191.8 119 77.3
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 3.3e-47 191.8 121 77.7
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 9.5e-47 190.3 150 66.7
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 1.8e-45 186.0 109 81.7
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 1.1e-42 176.8 129 65.9
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 2.4e-42 175.6 121 73.6
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 1.0e-40 170.2 119 73.1
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 2.3e-37 159.1 118 60.2
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 1.5e-36 156.4 118 66.1
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 2.0e-36 156.0 95 80.0
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 2.6e-36 155.6 116 62.1
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 1.9e-34 149.4 95 75.8
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 2.4e-34 149.1 95 81.1
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 4.0e-29 131.7 109 67.9
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.7e-27 126.3 75 82.7
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 2.4e-26 122.5 81 76.5
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 1.2e-25 120.2 67 80.6
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 5.6e-23 111.3 76 78.9
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 2.1e-22 109.4 132 42.4
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 6.2e-22 107.8 118 50.0
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 8.4e-19 97.4 52 86.5
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 3.2e-18 95.5 117 38.5
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 4.6e-17 91.7 57 82.5
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 7.8e-17 90.9 48 81.2
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 1.7e-16 89.7 95 55.8
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 3.9e-16 88.6 56 73.2
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 1.9e-15 86.3 109 46.8
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 3.1e-13 79.0 46 73.9
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 5.8e-12 74.7 118 41.5
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 1.7e-11 73.2 51 66.7
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 4.2e-10 68.6 46 65.2
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 1.5e-07 60.1 38 71.1
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 7.3e-07 57.8 71 47.9
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 9.6e-07 57.4 42 66.7
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 2.8e-06 55.8 35 74.3
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 2.8e-06 55.8 73 42.5


User provided reference genes

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