Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 3.6e-66 255.0 150 100.0
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 8.7e-20 100.9 140 52.1
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.9e-19 99.8 83 62.7
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 1.9e-19 99.8 84 60.7
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 2.5e-19 99.4 84 64.3
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 2.5e-19 99.4 137 55.5
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 5.7e-19 98.2 83 62.7
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 7.4e-19 97.8 84 61.9
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 1.3e-18 97.1 84 59.5
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 1.3e-18 97.1 84 61.9
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 1.6e-18 96.7 155 47.7
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 1.6e-18 96.7 155 47.7
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 1.6e-18 96.7 84 60.7
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 2.2e-18 96.3 150 46.7
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 2.2e-18 96.3 84 60.7
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.2e-18 96.3 84 61.9
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.2e-18 96.3 84 61.9
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 2.2e-18 96.3 84 61.9
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 2.2e-18 96.3 84 61.9
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 2.8e-18 95.9 84 59.5
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 2.8e-18 95.9 84 59.5
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 2.8e-18 95.9 84 59.5
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 2.8e-18 95.9 84 61.9
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 3.7e-18 95.5 84 60.7
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 4.8e-18 95.1 84 60.7
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 4.8e-18 95.1 84 58.3
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 4.8e-18 95.1 84 58.3
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 6.3e-18 94.7 146 50.7
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 6.3e-18 94.7 84 59.5
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 6.3e-18 94.7 84 59.5
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 8.2e-18 94.4 142 52.1
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 8.2e-18 94.4 150 46.7
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 8.2e-18 94.4 84 58.3
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 8.2e-18 94.4 84 60.7
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 8.2e-18 94.4 149 49.0
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 8.2e-18 94.4 84 59.5
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 1.4e-17 93.6 84 58.3
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 1.8e-17 93.2 84 57.1
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 1.8e-17 93.2 84 59.5
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 2.4e-17 92.8 147 54.4
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 3.1e-17 92.4 135 49.6
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 3.1e-17 92.4 135 49.6
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 3.1e-17 92.4 84 56.0
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 3.1e-17 92.4 128 53.1
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 3.1e-17 92.4 84 57.1
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 3.1e-17 92.4 84 57.1
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 4.1e-17 92.0 152 50.0
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 4.1e-17 92.0 153 46.4
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 4.1e-17 92.0 127 57.5
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 4.1e-17 92.0 84 57.1
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 5.3e-17 91.7 84 57.1
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 5.3e-17 91.7 83 57.8
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 5.3e-17 91.7 84 57.1
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 5.3e-17 91.7 84 58.3
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 6.9e-17 91.3 84 58.3
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 6.9e-17 91.3 84 58.3
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 9.0e-17 90.9 127 51.2
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 9.0e-17 90.9 84 56.0
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 9.0e-17 90.9 83 57.8
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 9.0e-17 90.9 84 57.1
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 9.0e-17 90.9 84 56.0
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 1.2e-16 90.5 84 56.0
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 1.2e-16 90.5 84 56.0
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.5e-16 90.1 84 57.1
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 2.0e-16 89.7 84 56.0
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 2.0e-16 89.7 159 49.1
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 2.6e-16 89.4 143 49.0
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 3.4e-16 89.0 83 59.0
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 3.4e-16 89.0 84 57.1
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 3.4e-16 89.0 83 56.6
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 4.5e-16 88.6 84 56.0
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 4.5e-16 88.6 108 56.5
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 4.5e-16 88.6 143 45.5
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 5.9e-16 88.2 161 46.0
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 5.9e-16 88.2 85 58.8
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 5.9e-16 88.2 136 47.8
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 7.6e-16 87.8 84 53.6
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 1.0e-15 87.4 84 54.8
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 1.0e-15 87.4 84 54.8
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 1.3e-15 87.0 149 49.0
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 1.3e-15 87.0 149 49.0
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 1.3e-15 87.0 84 54.8
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 1.3e-15 87.0 84 54.8
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 3.8e-15 85.5 84 53.6
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 6.5e-15 84.7 142 49.3
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 6.5e-15 84.7 84 54.8
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 6.5e-15 84.7 83 54.2
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 8.5e-15 84.3 84 54.8
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.1e-14 84.0 108 50.0
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 1.9e-14 83.2 84 51.2
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 5.5e-14 81.6 84 51.2
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 2.1e-13 79.7 78 53.8
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 2.7e-13 79.3 84 48.8
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 1.4e-12 77.0 72 58.3
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 3.9e-12 75.5 148 41.2
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 1.3e-10 70.5 89 42.7
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 4.8e-10 68.6 84 44.0
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 8.2e-10 67.8 84 44.0
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 3.1e-09 65.9 82 43.9
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 2.0e-08 63.2 84 40.5
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 2.6e-08 62.8 84 42.9
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 6.5e-07 58.2 89 37.1
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 8.5e-07 57.8 75 44.0
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 1.9e-06 56.6 43 69.8
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 7.2e-06 54.7 39 69.2


User provided reference genes

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