Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 0.0e+00 1158.7 576 100.0
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 1.6e-295 1018.8 602 83.9
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.3e-292 1009.2 585 85.3
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 3.7e-292 1007.7 585 85.0
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 2.5e-288 995.0 597 81.7
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 2.3e-278 961.8 575 81.0
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 8.2e-276 953.4 573 80.6
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 9.1e-275 949.9 573 80.1
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 8.5e-273 943.3 573 79.9
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 7.2e-272 940.3 577 77.8
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.8e-268 928.3 573 79.8
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 4.8e-268 927.5 573 78.5
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 1.8e-267 925.6 573 78.7
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 2.4e-267 925.2 574 77.4
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.4e-267 925.2 573 79.4
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 2.4e-267 925.2 573 79.6
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 3.1e-267 924.9 574 77.7
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 5.3e-267 924.1 575 80.0
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 9.1e-267 923.3 573 78.2
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.0e-266 922.2 572 77.8
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 3.4e-266 921.4 573 78.4
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 1.3e-265 919.5 573 77.1
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 1.7e-265 919.1 573 77.7
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 1.7e-265 919.1 573 77.8
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 1.7e-265 919.1 574 77.4
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 5.0e-265 917.5 570 79.3
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 2.5e-264 915.2 588 77.4
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 3.2e-264 914.8 552 79.2
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 3.2e-264 914.8 572 78.0
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 7.2e-264 913.7 575 76.9
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 1.6e-263 912.5 573 77.7
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 3.6e-263 911.4 573 77.0
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.6e-263 911.4 572 78.0
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 8.0e-263 910.2 584 76.9
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 8.0e-263 910.2 574 78.0
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 1.4e-262 909.4 584 76.5
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 2.3e-262 908.7 573 77.1
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 5.2e-262 907.5 578 75.8
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 5.2e-262 907.5 572 77.6
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 5.2e-262 907.5 573 77.7
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 8.8e-262 906.7 574 76.5
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 1.1e-261 906.4 573 77.3
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 1.1e-261 906.4 574 76.5
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 1.5e-261 906.0 573 75.7
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.6e-261 905.2 576 75.5
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 2.6e-261 905.2 574 76.5
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 5.7e-261 904.0 581 76.9
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 7.4e-261 903.7 574 76.5
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 9.7e-261 903.3 574 76.3
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 9.7e-261 903.3 583 76.3
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 1.1e-259 899.8 583 76.0
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 2.4e-259 898.7 576 75.3
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 3.1e-259 898.3 573 75.9
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 3.1e-259 898.3 574 75.6
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 9.1e-259 896.7 583 75.8
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 5.9e-258 894.0 573 74.5
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 1.0e-257 893.3 583 75.3
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 1.3e-257 892.9 583 75.5
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 2.2e-257 892.1 583 74.6
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 9.4e-256 886.7 583 74.6
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 1.2e-255 886.3 583 75.6
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 1.5e-253 879.4 574 74.0
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 4.4e-253 877.9 579 74.6
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 7.5e-253 877.1 580 72.9
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 9.7e-253 876.7 574 74.2
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 1.7e-252 875.9 574 74.0
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 1.7e-252 875.9 574 74.0
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 2.2e-252 875.5 576 75.2
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 2.8e-252 875.2 577 74.2
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 6.3e-252 874.0 626 69.8
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 8.2e-252 873.6 574 74.0
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 1.0e-249 866.7 575 73.2
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 6.5e-249 864.0 585 72.3
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.5e-248 862.8 574 72.8
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 2.5e-248 862.1 574 73.3
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.2e-247 859.8 574 72.8
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 7.5e-245 850.5 566 73.9
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 1.3e-244 849.7 524 77.7
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.2e-244 849.0 584 71.6
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 1.8e-243 845.9 583 72.2
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 7.0e-243 844.0 551 74.8
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 8.6e-241 837.0 710 62.0
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 1.1e-240 836.6 552 74.5
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 3.3e-240 835.1 571 71.5
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 2.1e-239 832.4 611 68.1
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 2.1e-239 832.4 574 71.6
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 6.1e-239 830.9 605 70.4
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 4.0e-238 828.2 573 72.6
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 1.2e-237 826.6 573 69.8
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 3.4e-237 825.1 553 74.3
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 1.8e-235 819.3 586 69.1
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 9.5e-232 807.0 572 69.9
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.1e-231 805.8 573 70.5
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 9.8e-229 797.0 578 69.6
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 4.1e-227 791.6 573 70.5
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 1.7e-225 786.2 563 70.9
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 6.2e-223 777.7 576 65.8
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 8.0e-223 777.3 533 73.2
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 6.8e-222 774.2 496 76.8
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 2.0e-221 772.7 527 72.7
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 2.9e-220 768.8 584 65.9
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 8.3e-220 767.3 582 66.5
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 1.4e-219 766.5 578 66.6
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 6.0e-218 761.1 593 64.2
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 8.6e-217 757.3 582 64.9
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.2e-213 746.9 583 65.0
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 2.2e-212 742.7 580 65.3
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 6.4e-212 741.1 455 79.1
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.7e-209 733.0 526 69.2
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 3.0e-209 732.3 577 64.6
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.2e-205 720.3 577 63.6
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 4.2e-203 711.8 583 64.5
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 2.5e-200 702.6 578 63.1
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 4.3e-200 701.8 768 52.6
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 5.6e-200 701.4 466 74.7
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.4e-195 686.0 443 73.6
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 4.5e-189 665.2 594 57.4
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 2.3e-185 652.9 496 65.9
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 7.1e-179 631.3 578 58.1
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 6.2e-175 618.2 587 55.2
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 1.7e-172 610.1 584 51.9
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 9.3e-171 604.4 404 74.5
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 6.3e-167 591.7 499 61.5
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 8.8e-161 571.2 587 53.7
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.4e-158 563.9 407 67.8
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 2.5e-155 553.1 400 70.2
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 4.2e-147 525.8 580 47.9
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 9.7e-144 514.6 591 46.0
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 3.2e-139 499.6 381 65.9
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 1.5e-131 474.2 685 44.4
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 6.3e-119 432.2 318 69.2
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.2e-117 427.9 313 69.6
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.6e-109 401.0 289 68.5
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 2.0e-109 400.6 259 74.5
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 2.8e-106 390.2 416 51.0
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.7e-103 380.9 457 46.8
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 5.6e-99 365.9 572 40.0
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.8e-98 363.6 291 63.2
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 4.0e-97 359.8 236 76.3
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 4.7e-90 336.3 307 58.0
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.3e-83 313.2 257 61.9
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.5e-80 304.7 262 57.6
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.3e-75 286.6 171 80.7
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.3e-71 275.0 169 78.1
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.9e-71 273.9 190 72.1
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 5.1e-68 263.1 203 62.1
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 1.5e-64 251.5 204 60.3
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.2e-63 247.7 155 76.8
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 8.4e-63 245.7 204 59.8
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.4e-62 245.0 155 76.1
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 4.3e-59 233.4 133 82.7
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 3.1e-57 227.3 133 82.0
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 3.1e-57 227.3 136 80.1
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 6.9e-57 226.1 257 48.2
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 1.3e-55 221.9 467 34.0
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 9.3e-54 215.7 142 70.4
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 2.7e-53 214.2 130 80.8
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.2e-48 198.7 121 77.7
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 4.2e-46 190.3 116 75.0
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.7e-44 183.0 120 70.8
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 8.8e-44 182.6 145 66.2
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 1.5e-43 181.8 120 66.7
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 4.3e-43 180.3 120 66.7
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 2.4e-41 174.5 120 65.8
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 5.3e-41 173.3 120 65.0
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 5.9e-40 169.9 184 50.0
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 2.6e-35 154.5 168 53.0
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 1.4e-33 148.7 227 42.3
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 4.1e-33 147.1 84 84.5
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 4.1e-25 120.6 75 70.7
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 9.1e-25 119.4 185 42.2
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 2.9e-23 114.4 66 78.8
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 9.4e-22 109.4 72 70.8
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 8.0e-21 106.3 60 80.0
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 1.8e-20 105.1 137 44.5
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 2.3e-20 104.8 99 55.6
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 4.2e-14 84.0 104 45.2
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 9.4e-14 82.8 50 80.0
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 1.4e-09 68.9 59 50.8
TAR374G1547 Trochodendron aralioides HOM05D003829 ORTHO05D004943 3.1e-09 67.8 32 90.6
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 5.9e-08 63.5 44 68.2
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 5.9e-08 63.5 44 68.2
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 5.0e-07 60.5 44 70.5
BcaC09g50448 Brassica carinata HOM05D015232 ORTHO05D015515 3.3e-06 57.8 44 63.6
A10p07150 Brassica napus HOM05D015232 ORTHO05D015515 3.3e-06 57.8 44 63.6
C01p25310 Brassica napus HOM05D015232 ORTHO05D015515 3.3e-06 57.8 44 63.6
Lsat_1_v5_gn_1_100681 Lactuca sativa HOM05D003829 ORTHO05D228871 4.3e-06 57.4 34 76.5


User provided reference genes

Program Settings