Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 2973.0 1494 100.0
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 2205.3 1439 77.3
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 2139.8 1466 74.0
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 2041.9 1700 63.5
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1704.9 1443 60.8
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1653.3 1453 58.2
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1567.0 1462 55.7
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1542.3 1457 54.6
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1533.5 1461 55.4
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1516.9 1459 54.3
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1513.0 1446 54.5
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1512.3 1487 53.1
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1494.9 1409 54.9
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1475.7 1458 52.9
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1473.4 1466 53.1
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1445.6 1447 52.9
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1444.5 1492 52.5
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1441.4 1447 53.1
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1433.7 1466 51.6
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1430.6 1447 52.4
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1430.6 1469 51.5
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1426.4 1459 52.0
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1417.9 1462 51.2
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1414.4 1463 51.7
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1412.5 1460 51.0
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1408.3 1455 51.9
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1405.2 1456 51.7
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1404.8 1466 50.8
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1401.0 1465 51.2
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1399.4 1462 50.8
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1387.9 1446 52.3
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1385.2 1564 48.8
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1383.2 1450 50.3
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1381.7 1449 50.5
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1378.2 1448 50.8
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1373.6 1468 50.9
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1361.7 1362 53.2
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1355.1 1445 50.1
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1353.6 1445 50.0
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1352.0 1442 50.1
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1349.0 1462 48.8
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1346.6 1447 49.8
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1346.3 1478 49.5
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1342.4 1443 49.8
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1340.1 1451 49.5
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1339.7 1456 49.0
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1338.9 1466 48.8
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1338.9 1466 48.8
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1337.8 1443 50.1
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1337.0 1445 50.0
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1334.3 1445 49.0
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1332.0 1468 48.4
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1329.7 1442 49.9
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1328.9 1462 49.8
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1322.4 1465 48.0
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1321.2 1443 49.6
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1318.1 1448 49.2
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1312.7 1451 48.7
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1299.6 1445 48.6
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1289.6 1227 54.9
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1288.5 1460 48.4
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1261.1 1452 48.0
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1239.2 1459 47.1
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1233.0 1459 46.7
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1228.0 1128 56.7
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1226.8 1460 46.4
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1226.1 1436 45.9
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1220.3 1403 47.5
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1217.6 1458 46.0
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1217.2 1162 55.3
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1213.7 1464 46.3
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1213.4 1460 46.5
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1209.1 1468 46.1
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1206.8 1463 46.3
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1202.2 1491 45.6
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1199.5 1451 46.2
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1195.3 1492 45.4
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1189.5 1448 46.0
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1188.7 1449 43.8
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1180.2 1465 45.5
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1154.4 1469 45.2
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1135.9 1447 45.3
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1135.6 1504 44.3
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1131.3 1051 55.4
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1121.3 1211 49.5
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1118.2 1088 52.8
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1104.4 1495 43.2
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.3e-309 1067.0 1033 53.9
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 1.1e-308 1063.9 1056 51.9
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 5.2e-298 1028.5 1451 40.2
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 2.2e-288 996.5 1059 51.6
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 3.4e-273 946.0 912 53.8
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.8e-235 819.3 1169 39.7
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 7.2e-231 805.4 1059 43.4
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 6.7e-221 772.3 1470 34.3
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.4e-210 738.0 1500 34.1
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 1.8e-210 737.6 1010 42.6
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 4.7e-206 723.0 1482 32.9
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 8.0e-198 695.7 977 40.9
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 3.5e-193 680.2 1056 40.2
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 5.7e-188 662.9 1064 39.6
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 1.3e-187 661.8 1066 39.5
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 5.6e-183 646.4 1332 32.7
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.0e-181 640.6 599 54.1
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 8.0e-174 615.9 591 55.3
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 3.7e-171 607.1 620 51.3
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 1.5e-159 568.5 520 57.5
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 2.1e-158 564.7 502 58.2
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 1.1e-154 552.4 510 57.3
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 4.8e-134 483.8 477 53.7
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.0e-125 454.1 575 43.8
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.1e-117 429.5 501 48.1
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.2e-116 426.0 1101 31.5
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-101 374.4 992 27.9
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.3e-99 369.4 503 41.4
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 2.5e-98 365.2 503 42.9
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 2.1e-97 362.1 535 43.6
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.0e-83 316.6 454 40.3
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 2.0e-79 302.4 302 51.3
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.7e-76 292.0 347 42.7
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 2.3e-72 278.9 396 40.7
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 3.7e-70 271.6 418 41.4
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 9.5e-66 256.9 558 31.7
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 4.7e-65 254.6 387 39.8
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.4e-64 253.1 311 42.4
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 2.9e-62 245.4 289 41.9
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 4.1e-61 241.5 269 49.8
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 3.5e-60 238.4 346 37.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 6.6e-59 234.2 812 26.7
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.5e-58 233.0 292 44.2
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.2e-57 229.9 512 31.4
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.4e-56 226.5 228 49.6
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.0e-56 224.9 355 37.2
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.4e-53 214.5 305 38.0
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 9.5e-50 203.8 270 43.0
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 4.9e-46 191.4 280 40.7
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 4.1e-45 188.3 277 40.8
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 5.2e-40 171.4 382 32.7
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 1.7e-35 156.4 221 40.3
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 3.9e-35 155.2 144 57.6
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 1.6e-33 149.8 193 40.9
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 9.0e-32 144.1 202 38.6
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 3.8e-30 138.7 181 40.9
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 2.4e-29 136.0 107 58.9
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 3.3e-26 125.6 181 39.2
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 7.3e-26 124.4 122 49.2
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 2.8e-25 122.5 126 51.6
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 4.9e-22 111.7 151 39.1
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 8.1e-17 94.4 111 45.0
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 9.9e-15 87.4 277 27.4
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-14 85.1 240 27.9
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 4.6e-12 78.6 66 57.6
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 2.3e-11 76.3 98 41.8
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 5.1e-11 75.1 98 41.8
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 1.4e-08 67.0 174 32.8
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 4.5e-07 62.0 44 59.1
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 1.3e-06 60.5 42 64.3
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.7e-06 60.1 55 54.5
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 4.9e-06 58.5 38 68.4


User provided reference genes

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