Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 6.7e-196 687.2 352 100.0
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.8e-125 452.6 401 65.6
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 1.6e-120 436.8 349 70.8
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 5.6e-110 401.7 367 63.2
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.5e-107 393.7 385 59.7
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 2.2e-106 389.8 355 64.2
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 6.2e-101 371.7 304 67.4
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 8.1e-101 371.3 351 59.5
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 4.0e-100 369.0 352 60.2
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 2.6e-99 366.3 353 60.9
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 9.9e-99 364.4 363 60.6
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 9.9e-99 364.4 358 58.9
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 1.7e-98 363.6 358 57.8
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 4.9e-98 362.1 289 67.8
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 8.4e-98 361.3 270 70.7
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 8.4e-98 361.3 351 59.8
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 1.9e-97 360.1 359 57.4
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 1.9e-97 360.1 361 59.3
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 2.4e-97 359.8 354 60.5
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 2.4e-97 359.8 352 59.1
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 3.2e-97 359.4 357 59.4
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 4.2e-97 359.0 353 59.5
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 7.1e-97 358.2 365 59.2
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 2.1e-96 356.7 360 58.6
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 2.7e-96 356.3 358 58.7
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 2.7e-96 356.3 359 58.8
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 3.5e-96 355.9 357 58.5
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 3.5e-96 355.9 324 60.8
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 4.6e-96 355.5 356 57.3
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 7.9e-96 354.8 269 68.8
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 7.9e-96 354.8 344 59.3
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 1.0e-95 354.4 343 59.2
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 1.3e-95 354.0 358 56.4
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 1.3e-95 354.0 298 63.8
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 1.8e-95 353.6 353 58.1
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 2.3e-95 353.2 311 64.3
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 2.3e-95 353.2 361 60.1
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 3.0e-95 352.8 351 59.0
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 3.0e-95 352.8 346 59.8
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 3.9e-95 352.4 359 58.5
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.1e-95 352.1 269 68.4
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 5.1e-95 352.1 355 58.9
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 5.1e-95 352.1 361 60.1
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 8.7e-95 351.3 268 66.8
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 8.7e-95 351.3 358 57.0
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.1e-94 350.9 359 59.1
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 1.1e-94 350.9 350 57.7
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 1.5e-94 350.5 360 59.7
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 1.5e-94 350.5 346 59.0
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 1.9e-94 350.1 351 58.1
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 1.9e-94 350.1 356 58.1
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 2.5e-94 349.7 345 58.3
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 5.6e-94 348.6 269 67.3
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 5.6e-94 348.6 353 58.9
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 9.6e-94 347.8 284 65.5
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 9.6e-94 347.8 358 55.9
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 1.3e-93 347.4 355 55.8
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 1.3e-93 347.4 352 57.4
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 1.6e-93 347.1 358 57.5
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 2.8e-93 346.3 269 68.0
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 2.8e-93 346.3 360 56.9
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 2.8e-93 346.3 271 68.6
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 3.7e-93 345.9 270 67.4
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 3.7e-93 345.9 270 67.4
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 4.8e-93 345.5 361 56.5
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 8.1e-93 344.7 356 57.6
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 8.1e-93 344.7 371 55.5
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 1.1e-92 344.4 350 56.9
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 2.4e-92 343.2 266 69.2
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 4.0e-92 342.4 266 69.2
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 4.0e-92 342.4 330 58.5
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 5.3e-92 342.0 354 56.8
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 6.9e-92 341.7 350 56.3
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 5.8e-91 338.6 291 63.9
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 5.8e-91 338.6 291 62.9
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 7.6e-91 338.2 229 76.0
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 7.6e-91 338.2 276 65.9
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 2.9e-90 336.3 355 56.6
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 3.8e-90 335.9 350 57.4
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 8.4e-90 334.7 270 65.9
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 1.4e-89 334.0 352 56.8
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 2.5e-89 333.2 268 65.3
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 2.7e-88 329.7 318 58.8
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 4.6e-88 328.9 360 55.6
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 4.6e-88 328.9 223 75.3
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 3.9e-87 325.9 380 51.8
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 5.7e-86 322.0 223 71.7
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 2.1e-85 320.1 342 54.4
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 2.4e-84 316.6 370 50.5
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 4.1e-84 315.8 263 63.9
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 1.1e-81 307.8 351 52.1
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.5e-81 306.6 187 82.4
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 4.2e-81 305.8 281 58.0
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.3e-79 300.1 281 57.3
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 9.7e-78 294.7 284 59.2
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 9.7e-78 294.7 234 62.0
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 1.6e-77 293.9 267 61.4
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 9.0e-76 288.1 278 55.8
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 1.0e-74 284.6 270 56.3
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 6.5e-74 282.0 264 58.0
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 7.9e-72 275.0 268 57.8
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 4.3e-70 269.2 209 64.1
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 2.0e-67 260.4 287 53.0
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.2e-66 256.9 249 55.4
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 2.9e-66 256.5 374 43.0
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 5.0e-66 255.8 262 53.1
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 8.5e-66 255.0 278 54.3
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 7.9e-64 248.4 257 53.3
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 3.0e-63 246.5 326 45.1
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 2.4e-60 236.9 193 63.2
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 3.2e-57 226.5 350 45.4
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 4.2e-57 226.1 260 49.2
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 3.6e-56 223.0 257 49.4
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 4.0e-55 219.5 156 71.8
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 2.8e-45 186.8 268 44.8
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 3.7e-45 186.4 290 41.0
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 4.4e-38 162.9 115 70.4
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 3.7e-37 159.8 158 57.6
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 1.2e-35 154.8 175 44.6
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 2.3e-31 140.6 94 71.3
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.2e-19 101.7 150 41.3
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.6e-18 95.5 213 31.9
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.0e-14 84.3 101 44.6
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.3e-13 81.6 89 43.8
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 1.9e-09 67.8 42 76.2
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 1.4e-07 61.6 119 40.3


User provided reference genes

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