Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g121760 Amaranthus hybridus HOM05D006835 ORTHO05D008587 2.9e-98 362.5 275 100.0
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 2.6e-46 189.9 295 69.5
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 7.6e-38 161.8 295 61.0
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 1.8e-34 150.6 296 59.1
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 1.8e-34 150.6 295 60.7
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 5.1e-34 149.1 270 60.0
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 5.1e-34 149.1 296 59.1
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 1.5e-33 147.5 295 59.0
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 1.9e-33 147.1 87 74.7
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 3.7e-32 142.9 295 57.3
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 1.2e-30 137.9 87 71.3
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 4.5e-30 136.0 87 67.8
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 7.7e-30 135.2 87 67.8
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 7.7e-30 135.2 87 67.8
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 1.7e-29 134.0 87 67.8
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 6.5e-29 132.1 87 69.0
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 3.2e-28 129.8 295 58.3
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 4.2e-28 129.4 87 70.1
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 4.2e-28 129.4 87 70.1
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 7.2e-28 128.6 87 66.7
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 7.2e-28 128.6 87 64.4
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 7.2e-28 128.6 87 64.4
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 1.6e-27 127.5 87 62.1
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 1.6e-27 127.5 87 67.8
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 1.6e-27 127.5 87 64.4
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 2.7e-27 126.7 87 63.2
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 3.6e-27 126.3 87 63.2
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 3.6e-27 126.3 88 63.6
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 3.6e-27 126.3 87 67.8
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 6.1e-27 125.6 295 51.5
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 6.1e-27 125.6 87 63.2
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 6.1e-27 125.6 87 60.9
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 1.0e-26 124.8 88 65.9
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 1.0e-26 124.8 292 53.8
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 1.4e-26 124.4 87 66.7
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 1.4e-26 124.4 87 66.7
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 1.8e-26 124.0 87 65.5
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 2.3e-26 123.6 88 64.8
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 3.0e-26 123.2 87 59.8
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 3.9e-26 122.9 88 64.8
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 5.1e-26 122.5 75 73.3
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 6.7e-26 122.1 295 51.2
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 6.7e-26 122.1 87 60.9
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 6.7e-26 122.1 87 60.9
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 8.8e-26 121.7 88 63.6
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 1.1e-25 121.3 75 72.0
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 1.1e-25 121.3 87 63.2
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 2.0e-25 120.6 87 59.8
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 2.5e-25 120.2 75 73.3
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 2.5e-25 120.2 87 63.2
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 2.5e-25 120.2 81 66.7
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 3.3e-25 119.8 292 53.1
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 3.3e-25 119.8 270 35.2
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 4.3e-25 119.4 87 59.8
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 4.3e-25 119.4 87 62.1
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 5.7e-25 119.0 72 75.0
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 5.7e-25 119.0 292 54.1
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 5.7e-25 119.0 88 56.8
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 9.7e-25 118.2 297 38.4
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 1.3e-24 117.9 85 58.8
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 1.7e-24 117.5 86 58.1
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 1.7e-24 117.5 87 57.5
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 2.8e-24 116.7 87 58.6
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 2.8e-24 116.7 87 62.1
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 3.7e-24 116.3 85 62.4
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 4.8e-24 115.9 296 54.4
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 8.2e-24 115.2 86 53.5
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 8.2e-24 115.2 76 67.1
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 8.2e-24 115.2 87 57.5
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 1.1e-23 114.8 87 57.5
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 1.1e-23 114.8 87 60.9
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 1.1e-23 114.8 87 57.5
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 2.4e-23 113.6 86 52.3
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 2.4e-23 113.6 296 52.4
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 2.4e-23 113.6 86 57.0
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 2.4e-23 113.6 86 57.0
FAN15G1646 Fragaria x ananassa HOM05D006835 ORTHO05D008587 2.4e-23 113.6 79 65.8
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 4.1e-23 112.8 86 54.7
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 4.1e-23 112.8 86 54.7
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 6.9e-23 112.1 76 64.5
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 9.1e-23 111.7 85 56.5
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 1.2e-22 111.3 80 63.8
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 1.2e-22 111.3 292 53.8
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 1.2e-22 111.3 86 54.7
VMungo1309G0603 Vigna mungo HOM05D006835 ORTHO05D008587 3.4e-22 109.8 75 61.3
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 5.9e-22 109.0 297 50.5
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 2.2e-21 107.1 88 55.7
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 2.2e-21 107.1 87 54.0
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 1.9e-20 104.0 297 49.5
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 1.9e-20 104.0 297 50.8
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 2.5e-20 103.6 297 51.5
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 9.4e-20 101.7 88 55.7
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.4e-18 97.8 258 48.4
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 1.8e-18 97.4 295 47.1
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 5.1e-18 95.9 69 59.4
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 1.8e-15 87.4 90 47.8
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 1.8e-15 87.4 90 47.8
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 3.1e-15 86.7 90 47.8
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 7.0e-15 85.5 90 46.7
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 1.6e-14 84.3 68 61.8
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 7.7e-14 82.0 309 43.4
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 1.0e-13 81.6 57 64.9
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 2.9e-13 80.1 293 48.1
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 1.1e-12 78.2 61 63.9
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 1.4e-07 61.2 74 40.5
Mapoly0015s0200 Marchantia polymorpha HOM05D006835 ORTHO05D008587 3.5e-06 56.6 78 38.5
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 4.5e-06 56.2 37 70.3


User provided reference genes

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