Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g119180 Amaranthus hybridus HOM05D000104 ORTHO05D019545 4.2e-47 191.0 98 100.0
Ah.04g154480 Amaranthus hybridus HOM05D000104 ORTHO05D006391 6.1e-38 160.6 94 90.4
AUR62038161 Chenopodium quinoa HOM05D000104 ORTHO05D006391 2.9e-24 115.2 102 65.7
AUR62038085 Chenopodium quinoa HOM05D000104 ORTHO05D006391 9.4e-23 110.2 102 63.7
EL10As3g23347 Beta vulgaris HOM05D000104 ORTHO05D006391 1.0e-21 106.7 104 61.5
Hund12165 Selenicereus undatus HOM05D000104 ORTHO05D006391 8.8e-21 103.6 95 58.9
Sc19g0004350 Simmondsia chinensis HOM05D000104 ORTHO05D006391 1.4e-18 96.3 98 55.1
TWI73G0072 Tripterygium wilfordii HOM05D000104 ORTHO05D006391 1.8e-13 79.3 94 45.7
Nitab4.5_0000144g0070 Nicotiana tabacum HOM05D000104 ORTHO05D019545 8.8e-13 77.0 103 41.7
Nitab4.5_0000180g0020 Nicotiana tabacum HOM05D000104 ORTHO05D019545 8.8e-13 77.0 103 41.7
MSTRG.10001 Avicennia marina HOM05D000104 ORTHO05D006391 9.8e-12 73.6 112 40.2
CAN.G69.9 Capsicum annuum HOM05D000104 ORTHO05D006391 2.2e-11 72.4 94 42.6
Thhalv10019947m.g Eutrema salsugineum HOM05D000104 ORTHO05D006391 3.7e-11 71.6 87 46.0
Rhsim02G0022300 Rhododendron simsii HOM05D000104 ORTHO05D006391 4.8e-11 71.2 99 43.4
SalBow2G2646 Salvia bowleyana HOM05D000104 ORTHO05D006391 6.3e-11 70.9 102 39.2
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 8.3e-11 70.5 94 43.6
Aa31LG5G16490 Aethionema arabicum HOM05D000104 ORTHO05D006391 1.4e-10 69.7 87 48.3
GSVIVG01017921001 Vitis vinifera HOM05D000104 ORTHO05D006391 1.4e-10 69.7 96 38.5
Peaxi162Scf00437g00635 Petunia axillaris HOM05D000104 ORTHO05D019545 1.8e-10 69.3 100 39.0
Potri.008G149900 Populus trichocarpa HOM05D000104 ORTHO05D006391 1.8e-10 69.3 87 44.8
unitig_749.g14068 Utricularia gibba HOM05D000104 ORTHO05D006391 3.1e-10 68.6 101 41.6
Cpa.g.c45714 Carica papaya HOM05D000104 ORTHO05D019545 7.0e-10 67.4 108 38.9
Dinv44505 Davidia involucrata HOM05D000104 ORTHO05D006391 7.0e-10 67.4 105 40.0
Sopen01g031470 Solanum pennellii HOM05D000104 ORTHO05D006391 9.1e-10 67.0 99 40.4
Aqoxy2G03333 Aquilegia oxysepala HOM05D000104 ORTHO05D006391 1.2e-09 66.6 101 40.6
AL3G16830 Arabidopsis lyrata HOM05D000104 ORTHO05D006391 1.2e-09 66.6 88 43.2
TAR636G2934 Trochodendron aralioides HOM05D000104 ORTHO05D006391 1.2e-09 66.6 102 43.1
Solyc01g079700.3 Solanum lycopersicum HOM05D000104 ORTHO05D019545 1.6e-09 66.2 100 40.0
Atru.chr4.2520 Acer truncatum HOM05D000104 ORTHO05D006391 2.0e-09 65.9 101 38.6
Migut.G00313 Erythranthe guttata HOM05D000104 ORTHO05D006391 2.0e-09 65.9 100 41.0
Sp3g04950 Schrenkiella parvula HOM05D000104 ORTHO05D006391 2.0e-09 65.9 87 43.7
Aqoxy1G03114 Aquilegia oxysepala HOM05D000104 ORTHO05D006391 2.7e-09 65.5 98 39.8
AT3G06010 Arabidopsis thaliana HOM05D000104 ORTHO05D006391 2.7e-09 65.5 93 46.2
Ciclev10004335m.g Citrus clementina HOM05D000104 ORTHO05D006391 2.7e-09 65.5 102 39.2
CiPaw.02G094700 Carya illinoinensis HOM05D000104 ORTHO05D006391 3.5e-09 65.1 99 38.4
Oeu042797.1 Olea europaea HOM05D000104 ORTHO05D006391 3.5e-09 65.1 118 40.7
Sabra08G0114000 Salix brachista HOM05D000104 ORTHO05D006391 4.5e-09 64.7 96 41.7
MSTRG.4011 Avicennia marina HOM05D000104 ORTHO05D006391 5.9e-09 64.3 107 38.3
Carub.0006s1764 Capsella rubella HOM05D000104 ORTHO05D006391 5.9e-09 64.3 88 40.9
Manes.15G026000 Manihot esculenta HOM05D000104 ORTHO05D006391 7.7e-09 63.9 89 40.4
AL6G30790 Arabidopsis lyrata HOM05D000104 ORTHO05D006391 1.7e-08 62.8 88 42.0
Glyma.20G143200 Glycine max HOM05D000104 ORTHO05D006391 2.2e-08 62.4 94 39.4
TPR.G37980 Trifolium pratense HOM05D000104 ORTHO05D006391 2.9e-08 62.0 95 37.9
BolC1t05642H Brassica oleracea HOM05D000104 ORTHO05D006391 3.8e-08 61.6 88 44.3
Nn1g02228 Nelumbo nucifera HOM05D000104 ORTHO05D006391 5.0e-08 61.2 105 39.0
Psat4g211240 Pisum sativum HOM05D000104 ORTHO05D006391 5.0e-08 61.2 88 39.8
Actinidia40166 Actinidia chinensis HOM05D000104 ORTHO05D006391 6.5e-08 60.8 103 38.8
PSO302G0005 Papaver somniferum HOM05D000104 ORTHO05D006391 6.5e-08 60.8 120 35.8
PGR142G0455 Punica granatum HOM05D000104 ORTHO05D006391 6.5e-08 60.8 104 34.6
VMungo0720G1811 Vigna mungo HOM05D000104 ORTHO05D006391 6.5e-08 60.8 94 37.2
CARHR193660 Cardamine hirsuta HOM05D000104 ORTHO05D006391 8.5e-08 60.5 88 43.2
Potri.010G091200 Populus trichocarpa HOM05D000104 ORTHO05D006391 8.5e-08 60.5 90 41.1
Carub.0003s0543 Capsella rubella HOM05D000104 ORTHO05D006391 1.1e-07 60.1 89 41.6
Prupe.1G154600 Prunus persica HOM05D000104 ORTHO05D006391 1.1e-07 60.1 94 36.2
QL06p003521 Quercus lobata HOM05D000104 ORTHO05D006391 1.1e-07 60.1 106 35.8
THA.LOC104818783 Tarenaya hassleriana HOM05D000104 ORTHO05D006391 1.1e-07 60.1 88 40.9
Sp6g25110 Schrenkiella parvula HOM05D000104 ORTHO05D006391 1.9e-07 59.3 96 43.8
SGA_v2.0_scaffold39G15292 Striga asiatica HOM05D000104 ORTHO05D006391 2.5e-07 58.9 107 33.6
FAN07G1560 Fragaria x ananassa HOM05D000104 ORTHO05D006391 3.2e-07 58.5 94 39.4
Glyma.11G004100 Glycine max HOM05D000104 ORTHO05D006391 3.2e-07 58.5 96 37.5
Nn4g26250 Nelumbo nucifera HOM05D000104 ORTHO05D006391 3.2e-07 58.5 107 40.2
PSO170G0309 Papaver somniferum HOM05D000104 ORTHO05D006391 3.2e-07 58.5 120 35.0
CiPaw.01G162800 Carya illinoinensis HOM05D000104 ORTHO05D006391 4.2e-07 58.2 101 32.7
vmacro15323 Vaccinium macrocarpon HOM05D000104 ORTHO05D006391 5.5e-07 57.8 129 32.6
Duzib151G0379 Durio zibethinus HOM05D000104 ORTHO05D006391 7.2e-07 57.4 98 33.7
Duzib212G0338 Durio zibethinus HOM05D000104 ORTHO05D006391 7.2e-07 57.4 99 36.4
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 7.2e-07 57.4 94 38.3
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 7.2e-07 57.4 94 38.3
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 7.2e-07 57.4 94 38.3
Medtr1g105050 Medicago truncatula HOM05D000104 ORTHO05D006391 7.2e-07 57.4 94 39.4
Phvul.007G054000 Phaseolus vulgaris HOM05D000104 ORTHO05D006391 7.2e-07 57.4 94 36.2
COL.COLO4_06204 Corchorus olitorius HOM05D000104 ORTHO05D006391 9.4e-07 57.0 98 34.7
FvH4_4g14970 Fragaria vesca HOM05D000104 ORTHO05D006391 9.4e-07 57.0 94 38.3
Lj3A741T68 Lonicera japonica HOM05D000104 ORTHO05D006391 9.4e-07 57.0 107 35.5
Ca_10932_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006391 2.1e-06 55.8 94 37.2
Haze_00933 Corylus avellana HOM05D000104 ORTHO05D006391 2.1e-06 55.8 103 37.9
Cc03_g03400 Coffea canephora HOM05D000104 ORTHO05D006391 2.7e-06 55.5 57 47.4
Manes.03G181600 Manihot esculenta HOM05D000104 ORTHO05D006391 2.7e-06 55.5 97 36.1
Zm00001eb417900 Zea mays HOM05D000104 ORTHO05D006391 2.7e-06 55.5 108 37.0
Thecc.04G226600 Theobroma cacao HOM05D000104 ORTHO05D006391 3.6e-06 55.1 98 33.7
Lalb_Chr02g0144671 Lupinus albus HOM05D000104 ORTHO05D006391 4.7e-06 54.7 91 35.2
Medtr5g005840 Medicago truncatula HOM05D000104 ORTHO05D006391 4.7e-06 54.7 96 39.6
CARHR080510 Cardamine hirsuta HOM05D000104 ORTHO05D006391 6.1e-06 54.3 87 40.2
Os05g0144300 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006391 6.1e-06 54.3 116 36.2
CANSAT78G1321 Cannabis sativa HOM05D000104 ORTHO05D006391 8.0e-06 53.9 87 35.6
RcHm_v2.0_Chr4g0417121 Rosa chinensis HOM05D000104 ORTHO05D006391 8.0e-06 53.9 94 38.3


User provided reference genes

Program Settings