Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g117940 Amaranthus hybridus HOM05D002263 ORTHO05D013693 5.9e-55 217.2 105 100.0
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 5.3e-48 194.1 104 89.4
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 2.5e-37 158.7 104 74.0
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 5.5e-37 157.5 104 72.1
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 4.7e-36 154.5 104 71.2
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 6.7e-35 150.6 104 71.2
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 4.4e-34 147.9 104 66.3
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 7.0e-32 140.6 112 60.7
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 9.1e-32 140.2 110 61.8
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 8.5e-30 133.7 104 60.6
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 1.1e-29 133.3 104 61.5
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 1.1e-29 133.3 104 61.5
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 2.5e-29 132.1 104 62.5
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 4.2e-29 131.3 104 59.6
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 7.2e-29 130.6 104 59.6
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 7.2e-29 130.6 104 57.7
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 7.2e-29 130.6 104 60.6
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 7.2e-29 130.6 104 60.6
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 7.2e-29 130.6 104 61.5
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 9.4e-29 130.2 104 59.6
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 9.4e-29 130.2 104 61.5
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 9.4e-29 130.2 104 60.6
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 1.2e-28 129.8 104 59.6
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.2e-28 129.8 104 59.6
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 1.6e-28 129.4 104 57.7
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.6e-28 129.4 104 60.6
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 2.1e-28 129.0 104 58.7
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 2.1e-28 129.0 104 60.6
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 2.1e-28 129.0 104 59.6
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 2.1e-28 129.0 104 60.6
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 2.1e-28 129.0 104 60.6
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 2.1e-28 129.0 104 59.6
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 2.1e-28 129.0 104 58.7
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 2.7e-28 128.6 104 57.7
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 2.7e-28 128.6 104 58.7
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 3.6e-28 128.3 104 60.6
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 3.6e-28 128.3 104 58.7
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 3.6e-28 128.3 104 57.7
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 3.6e-28 128.3 104 57.7
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 4.7e-28 127.9 104 59.6
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 4.7e-28 127.9 104 59.6
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 4.7e-28 127.9 104 58.7
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 4.7e-28 127.9 104 58.7
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 6.1e-28 127.5 104 57.7
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 6.1e-28 127.5 104 59.6
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 6.1e-28 127.5 104 57.7
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 8.0e-28 127.1 104 57.7
BraA03t14922Z Brassica rapa HOM05D002263 ORTHO05D013693 8.0e-28 127.1 104 59.6
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 8.0e-28 127.1 104 58.7
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 1.0e-27 126.7 104 58.7
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 1.0e-27 126.7 104 59.6
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 1.0e-27 126.7 104 57.7
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 1.0e-27 126.7 104 58.7
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 1.0e-27 126.7 104 58.7
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 1.0e-27 126.7 104 57.7
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 1.0e-27 126.7 104 57.7
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.4e-27 126.3 104 55.8
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 1.4e-27 126.3 104 55.8
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 1.4e-27 126.3 104 57.7
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.8e-27 125.9 104 56.7
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 2.3e-27 125.6 104 60.6
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 2.3e-27 125.6 104 59.6
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 3.0e-27 125.2 104 57.7
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 3.0e-27 125.2 104 57.7
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 3.0e-27 125.2 104 57.7
A03p58560 Brassica napus HOM05D002263 ORTHO05D013693 5.2e-27 124.4 104 59.6
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 5.2e-27 124.4 104 58.7
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 5.2e-27 124.4 104 57.7
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 6.7e-27 124.0 104 57.7
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 6.7e-27 124.0 104 54.8
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 6.7e-27 124.0 104 61.5
QL04p008053 Quercus lobata HOM05D002263 ORTHO05D003537 6.7e-27 124.0 104 58.7
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 6.7e-27 124.0 104 56.7
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 6.7e-27 124.0 104 54.8
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 8.8e-27 123.6 104 58.7
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 8.8e-27 123.6 104 59.6
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.1e-26 123.2 103 56.3
SEGI_14036 Sequoiadendron giganteum HOM05D002263 ORTHO05D013693 1.1e-26 123.2 104 56.7
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 1.1e-26 123.2 104 55.8
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.5e-26 122.9 104 57.7
BraA03t14916Z Brassica rapa HOM05D002263 ORTHO05D013693 2.0e-26 122.5 104 58.7
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 2.0e-26 122.5 104 56.7
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 2.0e-26 122.5 104 58.7
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 2.6e-26 122.1 104 56.7
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 3.3e-26 121.7 104 57.7
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 3.3e-26 121.7 105 57.1
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 4.4e-26 121.3 104 54.8
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 4.4e-26 121.3 104 54.8
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 4.4e-26 121.3 104 58.7
Lj4A284T34 Lonicera japonica HOM05D002263 ORTHO05D013693 5.7e-26 120.9 104 52.9
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 5.7e-26 120.9 104 56.7
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 5.7e-26 120.9 77 70.1
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 7.5e-26 120.6 104 57.7
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 7.5e-26 120.6 104 56.7
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 7.5e-26 120.6 105 58.1
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 9.7e-26 120.2 104 52.9
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 9.7e-26 120.2 104 56.7
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 1.3e-25 119.8 104 56.7
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.3e-25 119.8 104 56.7
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.3e-25 119.8 104 56.7
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.3e-25 119.8 104 56.7
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 1.3e-25 119.8 104 55.8
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 1.7e-25 119.4 104 57.7
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 2.2e-25 119.0 104 58.7
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 2.2e-25 119.0 104 58.7
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 2.8e-25 118.6 104 58.7
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 2.8e-25 118.6 105 56.2
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 3.7e-25 118.2 104 55.8
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 3.7e-25 118.2 104 57.7
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 3.7e-25 118.2 103 51.5
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 3.7e-25 118.2 103 51.5
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 6.3e-25 117.5 104 58.7
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 6.3e-25 117.5 104 58.7
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 6.3e-25 117.5 104 55.8
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 6.3e-25 117.5 104 55.8
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 8.2e-25 117.1 104 54.8
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 8.2e-25 117.1 105 57.1
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 8.2e-25 117.1 104 54.8
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 1.1e-24 116.7 104 57.7
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.1e-24 116.7 104 55.8
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.1e-24 116.7 103 54.4
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.1e-24 116.7 103 54.4
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.4e-24 116.3 77 67.5
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 1.4e-24 116.3 104 56.7
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 1.4e-24 116.3 105 58.1
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 1.8e-24 115.9 104 53.8
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 1.8e-24 115.9 104 55.8
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 3.1e-24 115.2 104 56.7
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 9.1e-24 113.6 104 50.0
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 1.2e-23 113.2 104 52.9
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 1.2e-23 113.2 104 55.8
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 2.0e-23 112.5 103 51.5
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 2.7e-23 112.1 104 49.0
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 2.7e-23 112.1 105 51.4
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 2.7e-23 112.1 104 55.8
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 4.5e-23 111.3 104 51.9
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 5.9e-23 110.9 104 51.0
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 5.9e-23 110.9 104 51.0
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 7.7e-23 110.5 104 53.8
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 1.3e-22 109.8 104 53.8
A03p58620 Brassica napus HOM05D002263 ORTHO05D013693 2.2e-22 109.0 92 57.6
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 2.2e-22 109.0 104 52.9
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 3.8e-22 108.2 106 51.9
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 3.8e-22 108.2 104 51.9
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 1.1e-21 106.7 103 50.5
Lj4A285T22 Lonicera japonica HOM05D002263 ORTHO05D013693 1.5e-21 106.3 66 65.2
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 7.2e-21 104.0 105 54.3
QL10p065355 Quercus lobata HOM05D002263 ORTHO05D029945 2.1e-20 102.4 90 55.6
Lj4A282T39 Lonicera japonica HOM05D002263 ORTHO05D003537 1.8e-19 99.4 66 62.1
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 2.3e-19 99.0 91 49.5
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 4.0e-19 98.2 103 49.5
FvH4_3g01730 Fragaria vesca HOM05D002263 ORTHO05D003537 1.2e-18 96.7 101 47.5
DCAR_029448 Daucus carota HOM05D002263 ORTHO05D013693 3.4e-18 95.1 67 61.2
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 2.8e-17 92.0 100 47.0
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 2.8e-17 92.0 102 46.1
BcaB01g05526 Brassica carinata HOM05D002263 ORTHO05D003537 6.3e-17 90.9 82 51.2
BcaB01g05530 Brassica carinata HOM05D002263 ORTHO05D003537 6.3e-17 90.9 82 51.2
C03p05140 Brassica napus HOM05D002263 ORTHO05D003537 6.3e-17 90.9 82 51.2
C03p05160 Brassica napus HOM05D002263 ORTHO05D003537 6.3e-17 90.9 82 51.2
C03p05180 Brassica napus HOM05D002263 ORTHO05D003537 6.3e-17 90.9 82 51.2
BolC3t13035H Brassica oleracea HOM05D002263 ORTHO05D003537 6.3e-17 90.9 82 51.2
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 1.1e-16 90.1 50 76.0
FAN25G0983 Fragaria x ananassa HOM05D002263 ORTHO05D003537 2.4e-16 89.0 100 45.0
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 2.7e-15 85.5 82 51.2
Lj4g0010623 Lotus japonicus HOM05D002263 ORTHO05D003537 2.7e-15 85.5 61 59.0
AL7G27330 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 2.2e-14 82.4 102 40.2
Medtr1g051315 Medicago truncatula HOM05D002263 ORTHO05D003537 2.2e-14 82.4 80 47.5
SHI25342 Sapria himalayana HOM05D002263 ORTHO05D003537 3.8e-14 81.6 63 55.6
Medtr1g075370 Medicago truncatula HOM05D002263 ORTHO05D003537 8.5e-14 80.5 80 47.5
SEGI_12910 Sequoiadendron giganteum HOM05D002263 ORTHO05D013693 8.5e-14 80.5 104 44.2
COL.COLO4_02379 Corchorus olitorius HOM05D002263 ORTHO05D003537 2.5e-13 79.0 96 40.6
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 4.2e-13 78.2 78 48.7
C03p93270 Brassica napus HOM05D007210 ORTHO05D006152 9.5e-13 77.0 69 52.2
BolC3t21625H Brassica oleracea HOM05D007210 ORTHO05D006152 9.5e-13 77.0 69 52.2
MD09G1237200 Malus domestica HOM05D002263 ORTHO05D013693 9.5e-13 77.0 99 44.4
SEGI_32756 Sequoiadendron giganteum HOM05D002263 ORTHO05D013693 4.7e-12 74.7 42 73.8
Lj4A282G40 Lonicera japonica HOM05D002263 ORTHO05D003537 6.1e-12 74.3 40 72.5
TPR.G32072 Trifolium pratense HOM05D002263 ORTHO05D003537 1.8e-11 72.8 61 49.2
MD11G1007100 Malus domestica HOM05D002263 ORTHO05D003537 8.8e-11 70.5 108 39.8
TAR369G0234 Trochodendron aralioides HOM05D002005 ORTHO05D003757 8.3e-09 63.9 35 71.4
Hma1.2p1_1755F.1_g300980 Hydrangea macrophylla HOM05D002263 ORTHO05D013693 2.3e-06 55.8 61 47.5
TPR.G17545 Trifolium pratense HOM05D002263 ORTHO05D003537 3.8e-06 55.1 36 55.6


User provided reference genes

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