Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 3.6e-213 744.6 362 100.0
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 1.5e-182 642.9 356 85.7
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 2.2e-170 602.4 363 81.0
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 2.6e-163 578.9 361 75.9
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 2.2e-157 559.3 361 73.7
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 3.1e-156 555.4 360 74.2
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 1.6e-155 553.1 361 73.1
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 2.6e-155 552.4 360 73.3
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 3.5e-155 552.0 356 73.3
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 5.9e-155 551.2 360 72.8
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 7.7e-155 550.8 360 73.3
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 1.3e-154 550.1 363 73.3
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 2.9e-154 548.9 358 72.3
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 2.9e-154 548.9 360 73.6
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 6.5e-154 547.7 360 73.9
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 8.5e-154 547.4 358 73.5
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 8.5e-154 547.4 358 72.6
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 8.5e-154 547.4 356 73.6
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 1.1e-153 547.0 364 72.3
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 1.5e-153 546.6 363 72.5
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 1.5e-153 546.6 360 71.7
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 2.5e-153 545.8 363 71.3
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 4.2e-153 545.0 356 73.0
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 5.5e-153 544.7 360 72.8
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 9.4e-153 543.9 355 73.5
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 1.2e-152 543.5 362 71.8
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 2.1e-152 542.7 360 71.7
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 3.6e-152 542.0 358 72.6
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 6.1e-152 541.2 352 72.4
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 6.1e-152 541.2 360 71.9
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 1.4e-151 540.0 359 72.7
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 1.8e-151 539.7 357 70.9
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 4.0e-151 538.5 361 69.8
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 5.2e-151 538.1 358 71.5
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 5.2e-151 538.1 358 70.7
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 5.2e-151 538.1 360 71.1
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 1.5e-150 536.6 359 72.7
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 2.6e-150 535.8 360 71.1
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 2.6e-150 535.8 363 71.6
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 3.3e-150 535.4 361 70.9
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 5.7e-150 534.6 359 72.4
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 7.5e-150 534.3 358 70.4
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 2.2e-149 532.7 358 70.7
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 2.2e-149 532.7 360 70.6
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 2.2e-149 532.7 358 70.4
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 2.2e-149 532.7 358 69.8
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 6.3e-149 531.2 367 70.3
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 4.1e-148 528.5 362 68.8
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 7.0e-148 527.7 394 65.7
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 9.1e-148 527.3 362 71.0
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 1.2e-147 526.9 360 71.1
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 1.2e-147 526.9 376 67.6
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 2.0e-147 526.2 364 69.5
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 2.7e-147 525.8 357 69.7
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 5.9e-147 524.6 367 70.0
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 1.0e-146 523.9 363 68.6
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 2.2e-146 522.7 358 70.9
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 5.0e-146 521.5 361 70.6
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 1.1e-145 520.4 357 69.5
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 9.4e-145 517.3 363 68.6
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 9.4e-145 517.3 361 69.5
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 1.2e-144 516.9 357 68.1
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.6e-144 516.5 360 70.3
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 2.1e-144 516.2 361 68.1
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 3.6e-144 515.4 358 69.0
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 6.1e-144 514.6 362 69.3
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 8.0e-144 514.2 369 67.5
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 1.0e-143 513.8 358 69.0
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 1.4e-143 513.5 362 69.1
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 1.4e-143 513.5 362 68.2
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.8e-143 513.1 361 69.8
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 2.3e-143 512.7 362 68.0
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 5.2e-143 511.5 361 69.0
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 6.8e-143 511.1 364 68.1
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 3.7e-141 505.4 362 67.7
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 1.8e-140 503.1 363 66.9
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 2.4e-140 502.7 334 72.8
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 5.4e-140 501.5 362 67.1
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 1.2e-139 500.4 355 66.8
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 2.7e-139 499.2 363 66.7
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 2.7e-139 499.2 363 66.4
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 4.5e-139 498.4 359 69.1
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 5.9e-139 498.0 360 67.5
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.3e-138 496.9 357 69.2
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 3.8e-138 495.4 363 65.0
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 1.6e-136 490.0 358 67.3
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 3.6e-136 488.8 358 65.9
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 2.3e-135 486.1 332 70.8
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 5.7e-134 481.5 357 66.7
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 7.0e-132 474.6 364 64.3
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.2e-131 473.8 334 67.4
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 1.8e-127 459.9 367 61.9
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 4.0e-127 458.8 356 63.5
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 7.5e-126 454.5 357 63.0
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 6.4e-125 451.4 344 63.4
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 8.0e-120 434.5 359 60.4
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 5.2e-119 431.8 358 58.4
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 4.1e-116 422.2 382 56.8
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 7.0e-116 421.4 345 60.9
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 8.6e-114 414.5 357 56.9
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 3.4e-110 402.5 365 54.5
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 2.4e-108 396.4 342 56.1
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 3.5e-107 392.5 360 53.3
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 2.5e-105 386.3 317 60.9
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 2.4e-100 369.8 265 66.0
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 7.3e-97 358.2 361 52.6
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 7.1e-92 341.7 364 50.3
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 1.6e-80 303.9 209 67.9
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 1.1e-79 301.2 367 46.3
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 1.4e-79 300.8 377 48.5
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 4.5e-70 269.2 208 61.1
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 6.3e-64 248.8 360 40.6
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 1.9e-52 210.7 131 74.0
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 8.0e-35 152.1 400 34.2
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 2.2e-32 144.1 93 68.8
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 1.0e-29 135.2 131 53.4
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 7.2e-28 129.0 97 66.0
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 4.8e-24 116.3 70 74.3
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 3.8e-21 106.7 94 56.4
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 2.1e-19 100.9 105 50.5
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 2.8e-16 90.5 55 76.4
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 7.3e-12 75.9 40 90.0
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 1.4e-07 61.6 109 38.5


User provided reference genes

Program Settings