Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 0.0e+00 1261.5 651 100.0
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 3.3e-233 812.0 614 72.6
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.3e-221 773.5 624 69.9
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 4.7e-219 765.0 640 67.8
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 4.5e-206 721.8 658 62.9
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.2e-190 670.6 609 61.1
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 1.7e-189 666.8 623 60.7
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.2e-187 660.6 624 61.1
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 6.2e-187 658.3 624 59.6
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 2.0e-185 653.3 623 59.2
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 5.8e-185 651.7 628 58.6
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 4.9e-184 648.7 637 57.6
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 2.4e-183 646.4 625 59.5
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 2.0e-182 643.3 624 59.9
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 2.0e-182 643.3 625 58.2
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.7e-181 640.2 624 58.8
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 6.6e-181 638.3 632 58.9
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 1.1e-180 637.5 623 58.4
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.9e-180 636.7 631 58.0
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.5e-180 634.4 632 57.8
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 9.5e-180 634.4 632 57.4
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.6e-179 632.5 631 58.6
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.1e-178 630.9 626 58.9
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.1e-178 630.9 645 57.8
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 3.1e-178 629.4 632 58.2
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 1.2e-177 627.5 635 57.6
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 9.9e-177 624.4 632 57.9
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.9e-176 622.9 623 58.7
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.9e-175 620.2 610 57.5
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 4.1e-175 619.0 625 58.7
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 3.5e-174 615.9 642 56.9
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 4.6e-174 615.5 626 57.3
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 4.6e-174 615.5 623 58.4
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 3.9e-173 612.5 625 58.9
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 5.1e-173 612.1 624 57.1
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.5e-172 610.5 660 55.6
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 9.5e-172 607.8 624 56.6
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 9.5e-172 607.8 615 56.6
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 4.7e-171 605.5 626 57.7
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.4e-170 604.0 624 56.4
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 1.8e-170 603.6 618 57.0
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 6.8e-170 601.7 625 56.5
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 2.6e-169 599.7 572 59.3
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 4.4e-169 599.0 619 56.2
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 9.9e-169 597.8 625 55.5
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 2.9e-168 596.3 627 55.0
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 1.1e-167 594.3 620 56.1
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.9e-167 593.6 622 56.1
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.9e-167 593.6 624 56.4
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 5.4e-167 592.0 625 55.8
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 3.5e-166 589.3 627 55.5
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 1.7e-165 587.0 644 52.8
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.5e-164 583.9 626 55.3
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 1.9e-164 583.6 635 55.3
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 4.3e-164 582.4 623 55.7
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 4.3e-164 582.4 627 55.0
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 7.3e-164 581.6 637 55.9
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 3.1e-162 576.2 610 54.9
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 3.1e-162 576.2 634 54.3
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 3.4e-161 572.8 627 53.9
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 5.8e-161 572.0 629 54.5
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 7.6e-161 571.6 624 53.7
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.7e-160 570.5 616 54.9
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 1.7e-160 570.5 627 53.6
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 1.7e-160 570.5 640 53.8
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 3.8e-160 569.3 627 54.2
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 6.4e-160 568.5 628 53.3
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.1e-159 567.8 661 52.3
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.1e-159 567.8 627 53.9
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 1.9e-159 567.0 623 53.6
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 4.2e-159 565.8 624 53.2
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 5.4e-159 565.5 560 57.1
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 5.4e-159 565.5 633 54.7
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 9.3e-159 564.7 579 57.0
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 1.6e-158 563.9 624 53.4
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 3.5e-158 562.8 627 53.3
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 1.3e-157 560.8 688 51.5
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 5.1e-157 558.9 625 52.6
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.5e-156 557.4 624 53.5
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 1.3e-155 554.3 633 53.7
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 2.8e-155 553.1 618 54.7
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 6.2e-155 552.0 636 53.9
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-153 547.0 627 52.2
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 7.6e-153 545.0 636 51.9
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 3.8e-152 542.7 602 54.0
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 6.4e-152 542.0 611 52.4
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 1.3e-149 534.3 643 52.3
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 1.3e-149 534.3 663 49.8
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 4.3e-148 529.3 548 56.0
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.4e-146 524.2 587 54.5
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 2.4e-146 523.5 536 56.3
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 2.6e-145 520.0 573 54.1
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 7.6e-145 518.5 625 50.6
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 3.8e-144 516.2 626 51.1
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 4.9e-144 515.8 637 51.3
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 7.1e-143 511.9 503 58.4
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 3.5e-142 509.6 624 50.3
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 9.6e-140 501.5 570 51.9
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 9.6e-140 501.5 638 50.3
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 1.8e-138 497.3 626 49.8
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 4.5e-137 492.7 552 52.7
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 1.8e-133 480.7 532 53.0
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 1.1e-124 451.4 594 47.6
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 4.7e-118 429.5 552 47.6
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.9e-114 415.6 479 52.6
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 1.9e-111 407.5 337 63.5
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.5e-111 407.1 652 44.9
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 2.7e-110 403.7 531 47.8
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 6.1e-110 402.5 401 56.1
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 2.3e-109 400.6 338 65.1
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.5e-108 397.9 428 54.7
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 2.6e-108 397.1 611 42.2
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.1e-106 390.2 411 56.7
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.8e-101 374.4 327 62.1
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 5.2e-101 372.9 531 44.3
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 5.7e-100 369.4 337 57.6
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-81 307.8 386 48.2
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 3.3e-79 300.4 516 39.5
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 5.8e-68 263.1 666 34.7
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.3e-67 261.9 276 54.0
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.1e-66 258.8 318 51.3
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.6e-62 245.0 357 46.2
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 6.8e-61 239.6 281 51.2
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 9.2e-58 229.2 195 64.6
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 1.7e-56 224.9 280 53.2
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 2.1e-54 218.0 688 30.5
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 2.4e-53 214.5 273 46.5
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.4e-53 214.5 310 46.1
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 9.9e-52 209.1 233 51.1
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.8e-51 207.2 228 53.1
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.4e-51 206.5 258 54.3
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 4.2e-50 203.8 370 37.8
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 5.4e-50 203.4 256 45.3
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 4.6e-49 200.3 223 50.2
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 1.3e-48 198.7 281 47.0
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 1.9e-47 194.9 279 46.2
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 4.7e-46 190.3 282 46.1
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.4e-42 177.9 134 70.9
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 1.1e-37 162.5 720 27.5
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.1e-37 162.5 105 80.0
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 3.1e-37 161.0 259 39.4
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 1.3e-35 155.6 279 39.8
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.4e-34 152.1 213 51.2
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 5.6e-31 140.2 189 44.4
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.1e-30 138.3 110 66.4
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 9.9e-28 129.4 277 40.4
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 9.9e-28 129.4 116 62.9
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.9e-27 127.9 282 34.8
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 1.1e-26 125.9 85 77.6
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 7.1e-26 123.2 81 81.5
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.6e-25 122.1 169 47.3
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 2.7e-25 121.3 80 81.2
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.6e-25 120.6 198 37.9
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 6.0e-25 120.2 269 35.3
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.3e-24 119.0 154 48.1
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.3e-24 118.2 356 31.5
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 3.0e-24 117.9 91 65.9
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.1e-23 115.9 149 51.7
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.5e-23 114.8 197 41.6
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.2e-19 101.7 171 42.1
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 7.9e-17 93.2 119 50.4
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 1.8e-16 92.0 95 51.6
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 8.7e-16 89.7 78 56.4
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 9.7e-15 86.3 124 45.2
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.4e-13 82.4 155 35.5
Ah.02g111740 Amaranthus hybridus HOM05D003315 ORTHO05D003407 1.5e-12 79.0 43 93.0
Ah.16g100850 Amaranthus hybridus HOM05D003315 ORTHO05D003407 1.5e-12 79.0 43 93.0
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 1.5e-12 79.0 119 36.1
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 2.6e-12 78.2 97 50.5
AUR62037055 Chenopodium quinoa HOM05D006728 ORTHO05D007911 7.7e-12 76.6 67 55.2
EL10Ac7g16629 Beta vulgaris HOM05D006728 ORTHO05D007911 2.2e-11 75.1 79 48.1
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 3.8e-11 74.3 252 27.0
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 3.9e-08 64.3 79 49.4
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 7.4e-07 60.1 85 42.4
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 1.3e-06 59.3 38 86.8
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 3.7e-06 57.8 38 84.2
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 6.3e-06 57.0 121 40.5


User provided reference genes

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