Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g013570 Amaranthus hybridus HOM05D001322 ORTHO05D061635 1.4e-68 262.7 123 100.0
Ah.07g205930 Amaranthus hybridus HOM05D001322 ORTHO05D001301 2.6e-09 65.9 74 51.4
Eucgr.A01487 Eucalyptus grandis HOM05D001322 ORTHO05D001301 6.3e-08 61.2 80 43.8
PSO384G4018 Papaver somniferum HOM05D001322 ORTHO05D001301 8.2e-08 60.8 77 46.8
CsaV3_5G000580 Cucumis sativus L. HOM05D001322 ORTHO05D001301 1.8e-07 59.7 79 43.0
Hund11677 Selenicereus undatus HOM05D001322 ORTHO05D001301 1.8e-07 59.7 80 46.2
MELO3C005877.2 Cucumis melo HOM05D001322 ORTHO05D001301 3.1e-07 58.9 77 42.9
Oeu036105.1 Olea europaea HOM05D001322 ORTHO05D001301 7.0e-07 57.8 76 44.7
Atru.chr1.143 Acer truncatum HOM05D001322 ORTHO05D001301 9.1e-07 57.4 77 44.2
AUR62006132 Chenopodium quinoa HOM05D001322 ORTHO05D001301 9.1e-07 57.4 77 41.6
MBI07_g23929_MAGBIO Magnolia biondii HOM05D001322 ORTHO05D001301 9.1e-07 57.4 92 41.3
Dinv35319 Davidia involucrata HOM05D001322 ORTHO05D001301 1.2e-06 57.0 77 42.9
Gohir.A08G096200 Gossypium hirsutum HOM05D001322 ORTHO05D001301 1.2e-06 57.0 80 46.2
Gohir.D08G103400 Gossypium hirsutum HOM05D001322 ORTHO05D001301 1.2e-06 57.0 80 46.2
Gorai.004G115100 Gossypium raimondii HOM05D001322 ORTHO05D001301 1.2e-06 57.0 80 46.2
Nitab4.5_0012491g0010 Nicotiana tabacum HOM05D001322 ORTHO05D001301 1.5e-06 56.6 77 44.2
Prupe.2G312400 Prunus persica HOM05D001322 ORTHO05D001301 1.5e-06 56.6 77 41.6
SalBow4G0680 Salvia bowleyana HOM05D001322 ORTHO05D001301 1.5e-06 56.6 75 44.0
SalBow4G3105 Salvia bowleyana HOM05D001322 ORTHO05D001301 1.5e-06 56.6 75 44.0
TWI14G0128 Tripterygium wilfordii HOM05D001322 ORTHO05D001301 1.5e-06 56.6 77 42.9
AT5G53120 Arabidopsis thaliana HOM05D001322 ORTHO05D001301 2.0e-06 56.2 76 43.4
CARHR266150 Cardamine hirsuta HOM05D001322 ORTHO05D001301 2.0e-06 56.2 76 43.4
Migut.F00231 Erythranthe guttata HOM05D001322 ORTHO05D001301 2.0e-06 56.2 72 45.8
Gohir.D12G251800 Gossypium hirsutum HOM05D001322 ORTHO05D001301 2.0e-06 56.2 80 45.0
Gorai.008G269900 Gossypium raimondii HOM05D001322 ORTHO05D001301 2.0e-06 56.2 80 45.0
Nitab4.5_0000714g0010 Nicotiana tabacum HOM05D001322 ORTHO05D001301 2.0e-06 56.2 74 44.6
Solyc03g007240.3 Solanum lycopersicum HOM05D001322 ORTHO05D001301 2.0e-06 56.2 80 45.0
Sopen03g003220 Solanum pennellii HOM05D001322 ORTHO05D001301 2.0e-06 56.2 80 45.0
PGSC0003DMG400009077 Solanum tuberosum HOM05D001322 ORTHO05D001301 2.0e-06 56.2 80 45.0
Aa31LG3G9350 Aethionema arabicum HOM05D001322 ORTHO05D001301 2.6e-06 55.8 76 46.1
ATR0188G012 Amborella trichopoda HOM05D001322 ORTHO05D001301 2.6e-06 55.8 74 47.3
EL10Ac3g05325 Beta vulgaris HOM05D001322 ORTHO05D001301 2.6e-06 55.8 80 43.8
Carub.0008s1332 Capsella rubella HOM05D001322 ORTHO05D001301 2.6e-06 55.8 76 43.4
CAN.G108.44 Capsicum annuum HOM05D001322 ORTHO05D001301 2.6e-06 55.8 77 44.2
Duzib068G0827 Durio zibethinus HOM05D001322 ORTHO05D001301 2.6e-06 55.8 83 42.2
Gohir.A12G251000 Gossypium hirsutum HOM05D001322 ORTHO05D001301 2.6e-06 55.8 80 45.0
MBI07_g37610_MAGBIO Magnolia biondii HOM05D001322 ORTHO05D001301 2.6e-06 55.8 70 48.6
Nn1g01881 Nelumbo nucifera HOM05D001322 ORTHO05D001301 2.6e-06 55.8 77 44.2
Os06g0528600 Oryza sativa ssp. japonica HOM05D001322 ORTHO05D001301 2.6e-06 55.8 69 49.3
Peaxi162Scf00198g00014 Petunia axillaris HOM05D001322 ORTHO05D001301 2.6e-06 55.8 77 44.2
Sed0009588 Sechium edule HOM05D001322 ORTHO05D001301 2.6e-06 55.8 77 41.6
SGA_v2.0_scaffold2010G54068 Striga asiatica HOM05D001322 ORTHO05D001301 2.6e-06 55.8 91 41.8
TAR375G0410 Trochodendron aralioides HOM05D001322 ORTHO05D001301 2.6e-06 55.8 72 45.8
TAR375G0456 Trochodendron aralioides HOM05D001322 ORTHO05D001301 2.6e-06 55.8 72 45.8
BcaB05g22013 Brassica carinata HOM05D001322 ORTHO05D001301 3.4e-06 55.5 80 43.8
CANSAT21G1579 Cannabis sativa HOM05D001322 ORTHO05D001301 3.4e-06 55.5 80 43.8
Glyma.06G126700 Glycine max HOM05D001322 ORTHO05D001301 3.4e-06 55.5 76 46.1
Manes.06G158700 Manihot esculenta HOM05D001322 ORTHO05D001301 3.4e-06 55.5 79 40.5
MSTRG.27038 Avicennia marina HOM05D001322 ORTHO05D001301 4.5e-06 55.1 77 41.6
CiPaw.05G255900 Carya illinoinensis HOM05D001322 ORTHO05D001301 4.5e-06 55.1 75 44.0
Cc02_g01740 Coffea canephora HOM05D001322 ORTHO05D001301 4.5e-06 55.1 77 42.9
Haze_00159 Corylus avellana HOM05D001322 ORTHO05D001301 4.5e-06 55.1 75 42.7
Duzib205G0821 Durio zibethinus HOM05D001322 ORTHO05D001301 4.5e-06 55.1 77 42.9
Glyma.04G237300 Glycine max HOM05D001322 ORTHO05D001301 4.5e-06 55.1 76 46.1
Oeu037103.2 Olea europaea HOM05D001322 ORTHO05D001301 4.5e-06 55.1 77 42.9
HPP92_006485 Vanilla planifolia HOM05D001322 ORTHO05D001301 4.5e-06 55.1 76 46.1
CSS0007183 Camellia sinensis var. sinensis HOM05D001322 ORTHO05D001301 5.9e-06 54.7 75 41.3
COL.COLO4_38239 Corchorus olitorius HOM05D001322 ORTHO05D001301 5.9e-06 54.7 80 43.8
Thhalv10013929m.g Eutrema salsugineum HOM05D001322 ORTHO05D001301 5.9e-06 54.7 76 44.7
Hma1.2p1_0538F.1_g174440 Hydrangea macrophylla HOM05D001322 ORTHO05D001301 5.9e-06 54.7 80 43.8
Sp6g15290 Schrenkiella parvula HOM05D001322 ORTHO05D001301 5.9e-06 54.7 76 44.7
Thecc.03G194600 Theobroma cacao HOM05D001322 ORTHO05D001301 5.9e-06 54.7 77 41.6
Zm00001eb383120 Zea mays HOM05D001322 ORTHO05D001301 5.9e-06 54.7 69 47.8
AL8G27770 Arabidopsis lyrata HOM05D001322 ORTHO05D001301 7.7e-06 54.3 76 42.1
AUR62019357 Chenopodium quinoa HOM05D001322 ORTHO05D001301 7.7e-06 54.3 77 40.3
FAN01G0681 Fragaria x ananassa HOM05D001322 ORTHO05D001301 7.7e-06 54.3 76 40.8
FAN10G2653 Fragaria x ananassa HOM05D001322 ORTHO05D001301 7.7e-06 54.3 76 40.8
FAN10G2745 Fragaria x ananassa HOM05D001322 ORTHO05D001301 7.7e-06 54.3 76 40.8
Medtr1g028360 Medicago truncatula HOM05D001322 ORTHO05D001301 7.7e-06 54.3 82 40.2
Medtr3g091090 Medicago truncatula HOM05D001322 ORTHO05D001301 7.7e-06 54.3 77 41.6
PSO063G6314 Papaver somniferum HOM05D001322 ORTHO05D001301 7.7e-06 54.3 75 41.3
PSO170G6896 Papaver somniferum HOM05D001322 ORTHO05D001301 7.7e-06 54.3 75 41.3
TWI39G0151 Tripterygium wilfordii HOM05D001322 ORTHO05D001301 7.7e-06 54.3 83 41.0
unitig_46.g18815 Utricularia gibba HOM05D001322 ORTHO05D001301 7.7e-06 54.3 76 40.8


User provided reference genes

Program Settings