Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 0.0e+00 1093.2 562 100.0
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 2.7e-239 832.0 611 73.6
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 3.1e-235 818.5 614 72.3
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.9e-216 756.1 611 69.2
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 4.3e-213 745.0 608 65.6
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 2.6e-210 735.7 603 65.2
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 5.1e-206 721.5 603 63.0
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.5e-202 709.9 605 62.0
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 3.9e-198 695.3 552 65.4
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 2.6e-194 682.6 598 62.0
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 4.5e-194 681.8 608 61.2
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 5.0e-193 678.3 629 58.8
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.9e-192 676.4 601 61.6
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 4.2e-192 675.2 548 64.8
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 2.7e-191 672.5 602 61.6
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 3.6e-191 672.2 534 66.5
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 6.1e-191 671.4 601 61.7
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 7.9e-191 671.0 622 60.0
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 1.8e-190 669.8 534 66.1
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 3.9e-190 668.7 598 59.9
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 1.5e-189 666.8 597 60.6
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 2.5e-189 666.0 575 63.0
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 5.7e-189 664.8 618 59.1
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 1.4e-187 660.2 611 59.6
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 1.4e-187 660.2 609 59.1
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 6.9e-187 657.9 568 64.1
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 5.9e-186 654.8 606 59.4
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 5.9e-186 654.8 606 59.4
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.7e-185 653.3 606 60.1
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 5.0e-185 651.7 602 58.3
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 1.4e-184 650.2 607 59.1
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 1.9e-184 649.8 548 64.2
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.9e-184 649.8 606 60.1
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 2.5e-184 649.4 606 59.1
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 2.5e-184 649.4 601 59.1
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 4.7e-183 645.2 553 62.2
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 3.9e-182 642.1 612 59.2
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 7.4e-181 637.9 555 61.4
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 2.2e-180 636.3 602 58.1
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 6.3e-180 634.8 552 61.6
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 6.3e-180 634.8 552 61.8
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.4e-179 633.6 603 57.4
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 1.4e-179 633.6 598 57.7
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 3.1e-179 632.5 556 60.3
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 4.1e-179 632.1 600 57.7
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 9.1e-179 630.9 553 60.9
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.0e-177 627.5 594 57.7
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.7e-177 626.7 607 57.7
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 1.1e-176 624.0 571 60.9
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 2.5e-176 622.9 556 62.6
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 6.1e-175 618.2 550 60.2
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 5.2e-174 615.1 608 56.6
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.7e-173 611.7 548 60.0
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 7.4e-173 611.3 544 62.3
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 1.7e-172 610.1 551 60.8
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 8.2e-172 607.8 632 55.1
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 1.1e-171 607.4 601 56.1
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 4.1e-171 605.5 553 60.9
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 5.3e-171 605.1 652 53.8
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 7.0e-171 604.7 553 60.6
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 3.5e-170 602.4 548 60.0
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 1.7e-169 600.1 551 59.0
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 2.2e-169 599.7 634 53.9
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 2.9e-169 599.4 551 58.8
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 6.5e-169 598.2 606 55.9
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 3.2e-168 595.9 590 54.9
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 4.2e-168 595.5 553 59.9
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 7.2e-168 594.7 557 59.2
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 1.2e-167 594.0 563 58.3
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 2.1e-167 593.2 605 55.9
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 3.6e-167 592.4 604 55.0
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 6.1e-167 591.7 603 55.2
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 4.0e-166 589.0 607 54.2
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 8.8e-166 587.8 595 55.5
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.6e-165 586.3 646 51.4
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 4.4e-165 585.5 605 55.4
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 7.5e-165 584.7 542 59.8
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 2.2e-164 583.2 553 58.2
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 2.4e-163 579.7 619 54.1
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 4.1e-163 578.9 543 58.9
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 4.1e-163 578.9 543 58.9
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 4.1e-163 578.9 543 58.9
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 1.2e-162 577.4 543 58.7
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 1.6e-162 577.0 543 58.7
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 2.7e-162 576.2 541 59.0
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 5.9e-162 575.1 607 54.7
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.7e-161 573.5 551 57.2
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.5e-160 570.5 604 53.8
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 4.2e-160 568.9 548 57.8
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 1.6e-159 567.0 609 53.7
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 1.8e-158 563.5 542 57.6
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.6e-157 559.7 543 57.8
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 7.5e-157 558.1 494 59.5
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 7.5e-157 558.1 559 56.9
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 1.7e-156 557.0 563 57.2
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 8.3e-156 554.7 565 55.9
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 3.8e-153 545.8 604 52.8
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 1.9e-152 543.5 598 52.2
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 1.2e-149 534.3 538 54.3
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 3.4e-149 532.7 548 55.5
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 3.4e-149 532.7 433 65.4
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 4.0e-142 509.2 537 54.0
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 2.6e-141 506.5 488 58.4
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 4.9e-140 502.3 537 53.1
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 3.2e-139 499.6 491 56.4
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 1.0e-137 494.6 433 61.4
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 6.2e-135 485.3 394 64.7
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.2e-130 471.1 520 51.5
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.5e-128 463.4 450 57.6
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 5.6e-128 462.2 612 43.8
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 2.8e-127 459.9 615 44.9
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 8.1e-119 431.8 473 51.8
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 1.4e-115 421.0 405 58.3
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.1e-114 417.2 364 62.4
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 1.7e-113 414.1 521 48.8
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 3.4e-109 399.8 353 60.6
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 4.2e-107 392.9 363 61.2
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 9.6e-104 381.7 376 57.7
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 6.9e-102 375.6 419 51.8
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 3.0e-97 360.1 417 52.0
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 2.1e-95 354.0 490 46.9
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 8.1e-95 352.1 607 39.7
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 6.9e-94 349.0 404 51.0
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 2.6e-93 347.1 522 45.6
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.8e-89 334.3 466 45.7
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 7.4e-88 328.9 294 60.5
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 3.7e-87 326.6 423 47.5
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.0e-85 320.9 443 45.4
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 8.7e-81 305.4 228 68.4
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 3.7e-71 273.5 217 62.7
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 1.8e-70 271.2 197 69.5
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 7.7e-69 265.8 324 50.9
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.5e-67 259.6 379 44.3
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 5.2e-65 253.1 199 64.8
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.1e-64 251.9 342 48.0
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.1e-62 245.4 187 64.7
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.1e-62 243.8 288 48.6
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 4.5e-61 240.0 204 60.8
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 1.0e-60 238.8 273 49.8
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-58 231.5 223 52.9
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 2.7e-58 230.7 280 48.2
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 5.3e-54 216.5 298 49.3
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 5.2e-49 199.9 287 44.6
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 8.8e-49 199.1 165 58.8
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 2.0e-48 198.0 222 51.8
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 4.4e-48 196.8 173 61.8
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 5.7e-48 196.4 173 61.8
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 4.5e-45 186.8 236 47.5
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.0e-44 185.7 120 74.2
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 3.6e-34 150.6 211 43.6
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 1.2e-29 135.6 210 41.0
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 9.5e-27 125.9 122 51.6
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 8.0e-26 122.9 192 42.2
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 1.5e-24 118.6 197 41.6
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 9.8e-24 115.9 638 23.5
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 3.7e-23 114.0 183 39.9
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 6.4e-23 113.2 65 83.1
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 1.9e-22 111.7 189 39.2
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 7.0e-22 109.8 608 24.5
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 9.2e-22 109.4 108 56.5
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 1.2e-21 109.0 76 69.7
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 1.2e-21 109.0 197 40.6
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 7.8e-21 106.3 77 67.5
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 1.3e-20 105.5 80 63.8
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.6e-18 98.6 58 84.5
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.4e-17 95.5 132 45.5
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 3.2e-14 84.3 66 63.6
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 4.1e-14 84.0 208 35.6
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 1.2e-13 82.4 50 78.0
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 1.3e-12 79.0 56 66.1
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 8.6e-12 76.3 53 67.9
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 1.9e-11 75.1 112 40.2
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 1.9e-11 75.1 70 60.0
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 7.3e-11 73.2 202 28.2
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 4.7e-10 70.5 45 75.6
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.4e-09 68.9 74 51.4
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 3.1e-09 67.8 139 34.5
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 2.0e-08 65.1 93 43.0
CAN.G1077.9 Capsicum annuum HOM05D000222 ORTHO05D012343 9.9e-08 62.8 279 26.9
Mapoly0063s0044 Marchantia polymorpha HOM05D003810 ORTHO05D004416 4.9e-07 60.5 49 59.2
CAN.G523.5 Capsicum annuum HOM05D000222 ORTHO05D012343 1.4e-06 58.9 63 49.2
A07p35570 Brassica napus HOM05D003810 ORTHO05D004416 3.2e-06 57.8 50 60.0
BraA07t31145Z Brassica rapa HOM05D003810 ORTHO05D004416 3.2e-06 57.8 50 60.0
MD08G1246500 Malus domestica HOM05D003810 ORTHO05D004416 3.2e-06 57.8 43 69.8


User provided reference genes

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