Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.01g004290 Amaranthus hybridus HOM05D006143 ORTHO05D007587 9.9e-253 876.3 448 100.0
EL10Ac8g20474 Beta vulgaris HOM05D006143 ORTHO05D007587 3.7e-167 592.0 477 66.2
AUR62014918 Chenopodium quinoa HOM05D006143 ORTHO05D007587 1.5e-160 570.1 477 63.7
Hund23878 Selenicereus undatus HOM05D006143 ORTHO05D007587 8.3e-151 537.7 475 58.9
AUR62031125 Chenopodium quinoa HOM05D006143 ORTHO05D007587 2.4e-142 509.6 434 63.1
Sc05g0007290 Simmondsia chinensis HOM05D006143 ORTHO05D007587 1.6e-125 453.8 477 52.6
Dinv17374 Davidia involucrata HOM05D006143 ORTHO05D007587 7.4e-123 444.9 473 51.0
GSVIVG01021150001 Vitis vinifera HOM05D006143 ORTHO05D007587 3.3e-115 419.5 476 46.0
Hma1.2p1_0155F.1_g068560 Hydrangea macrophylla HOM05D006143 ORTHO05D007587 5.8e-112 408.7 474 47.5
CSS0012799 Camellia sinensis var. sinensis HOM05D006143 ORTHO05D007587 1.3e-111 407.5 472 46.2
CiPaw.10G054900 Carya illinoinensis HOM05D006143 ORTHO05D007587 1.2e-104 384.4 478 44.8
HanXRQChr11g0327231 Helianthus annuus HOM05D006143 ORTHO05D007587 4.5e-104 382.5 448 46.0
Atru.chr10.1746 Acer truncatum HOM05D006143 ORTHO05D007587 1.0e-103 381.3 467 45.8
Manes.16G034450 Manihot esculenta HOM05D006143 ORTHO05D007587 1.9e-102 377.1 462 45.2
Potri.011G062100 Populus trichocarpa HOM05D006143 ORTHO05D007587 7.2e-102 375.2 462 47.0
Prupe.4G055900 Prunus persica HOM05D006143 ORTHO05D007587 9.4e-102 374.8 476 45.0
Sabra11G0044000 Salix brachista HOM05D006143 ORTHO05D007587 1.4e-100 370.9 462 46.3
MD05G1306600 Malus domestica HOM05D006143 ORTHO05D007587 1.8e-100 370.5 467 45.2
RcHm_v2.0_Chr5g0009801 Rosa chinensis HOM05D006143 ORTHO05D007587 2.3e-100 370.2 474 43.9
Duzib235G0124 Durio zibethinus HOM05D006143 ORTHO05D007587 4.3e-99 365.9 469 43.1
Thecc.06G177300 Theobroma cacao HOM05D006143 ORTHO05D007587 1.1e-97 361.3 467 43.9
DCAR_007976 Daucus carota HOM05D006143 ORTHO05D007587 3.1e-97 359.8 484 44.0
FvH4_7g02070 Fragaria vesca HOM05D006143 ORTHO05D007587 2.0e-96 357.1 473 43.1
FAN11G1643 Fragaria x ananassa HOM05D006143 ORTHO05D007587 2.6e-96 356.7 471 43.5
TWI63G1355 Tripterygium wilfordii HOM05D006143 ORTHO05D007587 4.5e-96 355.9 468 42.1
PSO832G2207 Papaver somniferum HOM05D006143 ORTHO05D007587 1.3e-95 354.4 459 45.3
FAN06G1438 Fragaria x ananassa HOM05D006143 ORTHO05D007587 5.0e-95 352.4 481 42.4
Lsat_1_v5_gn_4_50941 Lactuca sativa HOM05D006143 ORTHO05D007587 5.0e-95 352.4 495 43.2
Phvul.003G056900 Phaseolus vulgaris HOM05D006143 ORTHO05D007587 1.4e-94 350.9 464 43.3
PGSC0003DMG400010721 Solanum tuberosum HOM05D006143 ORTHO05D007587 7.2e-94 348.6 483 43.1
FAN03G1069 Fragaria x ananassa HOM05D006143 ORTHO05D007587 2.1e-93 347.1 483 42.4
PSO210G3197 Papaver somniferum HOM05D006143 ORTHO05D007587 3.6e-93 346.3 453 45.5
Eucgr.E03166 Eucalyptus grandis HOM05D006143 ORTHO05D007587 1.4e-92 344.4 480 41.9
MBI07_g06435_MAGBIO Magnolia biondii HOM05D006143 ORTHO05D007587 1.8e-92 344.0 454 44.1
ECA234G2393 Erigeron canadensis HOM05D006143 ORTHO05D007587 3.0e-92 343.2 467 42.8
Lalb_Chr16g0384181 Lupinus albus HOM05D006143 ORTHO05D007587 3.9e-92 342.8 469 43.3
Nn1g04309 Nelumbo nucifera HOM05D006143 ORTHO05D007587 5.1e-92 342.4 467 43.0
Ciclev10015477m.g Citrus clementina HOM05D006143 ORTHO05D007587 8.8e-92 341.7 405 46.2
Oeu045072.2 Olea europaea HOM05D006143 ORTHO05D007587 2.0e-91 340.5 459 41.2
Sopen02g022240 Solanum pennellii HOM05D006143 ORTHO05D007587 2.0e-91 340.5 470 43.0
Migut.M01078 Erythranthe guttata HOM05D006143 ORTHO05D007587 2.6e-91 340.1 472 42.4
FAN21G2423 Fragaria x ananassa HOM05D006143 ORTHO05D007587 3.3e-91 339.7 471 42.5
TPR.G16154 Trifolium pratense HOM05D006143 ORTHO05D007587 9.7e-91 338.2 471 41.8
Cpa.g.sc7.33 Carica papaya HOM05D006143 ORTHO05D007587 4.8e-90 335.9 465 41.7
Aqoxy4G00545 Aquilegia oxysepala HOM05D006143 ORTHO05D007587 1.4e-89 334.3 466 40.8
ClCG03G007960 Citrullus lanatus HOM05D006143 ORTHO05D007587 1.4e-89 334.3 461 41.4
Cc02_g14290 Coffea canephora HOM05D006143 ORTHO05D007587 1.4e-89 334.3 463 40.6
Peaxi162Scf00875g00320 Petunia axillaris HOM05D006143 ORTHO05D007587 9.1e-89 331.6 500 40.2
Gorai.011G031600 Gossypium raimondii HOM05D006143 ORTHO05D007587 2.0e-88 330.5 467 40.0
Medtr4g087975 Medicago truncatula HOM05D006143 ORTHO05D007587 5.9e-88 328.9 450 42.9
Solyc02g077320.4 Solanum lycopersicum HOM05D006143 ORTHO05D007587 1.0e-87 328.2 464 42.2
FAN16G0487 Fragaria x ananassa HOM05D006143 ORTHO05D007587 2.9e-87 326.6 458 42.6
Gohir.D10G029700 Gossypium hirsutum HOM05D006143 ORTHO05D007587 2.9e-87 326.6 467 39.8
Glyma.07G203300 Glycine max HOM05D006143 ORTHO05D007587 6.5e-87 325.5 480 41.0
arahy.Tifrunner.gnm1.ann1.W3DLTW Arachis hypogaea HOM05D006143 ORTHO05D007587 1.9e-86 323.9 464 40.1
MELO3C002630.2 Cucumis melo HOM05D006143 ORTHO05D007587 2.5e-86 323.6 464 40.5
Lj4g0027541 Lotus japonicus HOM05D006143 ORTHO05D007587 4.2e-86 322.8 470 41.3
Aa31LG6G1190 Aethionema arabicum HOM05D006143 ORTHO05D007587 4.7e-85 319.3 460 40.7
arahy.Tifrunner.gnm1.ann1.VAEI8B Arachis hypogaea HOM05D006143 ORTHO05D007587 1.8e-84 317.4 467 39.6
COL.COLO4_31385 Corchorus olitorius HOM05D006143 ORTHO05D007587 3.0e-84 316.6 444 41.0
Glyma.13G172400 Glycine max HOM05D006143 ORTHO05D007587 3.0e-84 316.6 468 41.5
Psat7g118360 Pisum sativum HOM05D006143 ORTHO05D007587 6.7e-84 315.5 482 41.1
Sabra11G0042500 Salix brachista HOM05D006143 ORTHO05D007587 6.7e-84 315.5 439 43.7
Haze_06321 Corylus avellana HOM05D006143 ORTHO05D007587 4.8e-82 309.3 450 41.6
PGR042G3042 Punica granatum HOM05D006143 ORTHO05D007587 6.3e-82 308.9 446 40.4
Ca_26041_v3 Cicer arietinum L. HOM05D006143 ORTHO05D007587 2.4e-81 307.0 443 41.8
BcaNung05875 Brassica carinata HOM05D006143 ORTHO05D007587 1.2e-80 304.7 457 40.3
CARHR225290 Cardamine hirsuta HOM05D006143 ORTHO05D007587 2.0e-80 303.9 457 38.9
Nitab4.5_0011727g0010 Nicotiana tabacum HOM05D006143 ORTHO05D007587 2.6e-80 303.5 457 40.0
THA.LOC104798414 Tarenaya hassleriana HOM05D006143 ORTHO05D007587 2.6e-80 303.5 463 38.2
AT4G18470 Arabidopsis thaliana HOM05D006143 ORTHO05D007587 4.5e-80 302.8 465 39.8
Thhalv10025244m.g Eutrema salsugineum HOM05D006143 ORTHO05D007587 4.5e-80 302.8 461 40.1
BraA01t00988Z Brassica rapa HOM05D006143 ORTHO05D007587 7.7e-80 302.0 457 39.4
AL7G35830 Arabidopsis lyrata HOM05D006143 ORTHO05D007587 1.0e-79 301.6 457 39.2
Carub.0007s2278 Capsella rubella HOM05D006143 ORTHO05D007587 1.0e-79 301.6 458 39.5
BcaC09g51506 Brassica carinata HOM05D006143 ORTHO05D007587 1.3e-79 301.2 457 39.8
TAR626G0253 Trochodendron aralioides HOM05D006143 ORTHO05D007587 2.2e-79 300.4 352 46.6
Sp7g15570 Schrenkiella parvula HOM05D006143 ORTHO05D007587 3.8e-79 299.7 462 39.2
BolC1t01214H Brassica oleracea HOM05D006143 ORTHO05D007587 5.0e-79 299.3 457 39.6
Nitab4.5_0000376g0080 Nicotiana tabacum HOM05D006143 ORTHO05D007587 6.5e-79 298.9 418 42.1
C01p12400 Brassica napus HOM05D006143 ORTHO05D007587 8.5e-79 298.5 457 38.9
ATR0602G028 Amborella trichopoda HOM05D006143 ORTHO05D007587 1.5e-78 297.7 462 39.6
Medtr6g039570 Medicago truncatula HOM05D006143 ORTHO05D007587 4.2e-78 296.2 442 39.1
Actinidia39490 Actinidia chinensis HOM05D006143 ORTHO05D007587 7.2e-78 295.4 472 38.8
A01p10420 Brassica napus HOM05D006143 ORTHO05D007587 6.1e-77 292.4 482 37.3
SGA_v2.0_scaffold16G07658 Striga asiatica HOM05D006143 ORTHO05D007587 2.0e-75 287.3 451 39.5
Gohir.A10G029200 Gossypium hirsutum HOM05D006143 ORTHO05D007587 7.0e-73 278.9 431 39.2
VMungo0251G1209 Vigna mungo HOM05D006143 ORTHO05D007587 3.8e-71 273.1 332 46.7
Sed0020086 Sechium edule HOM05D006143 ORTHO05D007587 6.5e-71 272.3 417 39.3
Zm00001eb206790 Zea mays HOM05D006143 ORTHO05D007587 5.5e-70 269.2 453 36.6
Os02g0312800 Oryza sativa ssp. japonica HOM05D006143 ORTHO05D007587 4.7e-69 266.2 454 35.9
unitig_699.g19338 Utricularia gibba HOM05D006143 ORTHO05D007587 1.5e-67 261.2 436 37.6
FvH4_3g08270 Fragaria vesca HOM05D006143 ORTHO05D007587 2.0e-67 260.8 348 43.1
CsaV3_1G012630 Cucumis sativus L. HOM05D006143 ORTHO05D007587 1.0e-63 248.4 340 43.5
Cfa000554 Carpinus fangiana HOM05D006143 ORTHO05D007587 5.2e-60 236.1 311 44.4
Eucgr.E02653 Eucalyptus grandis HOM05D006143 ORTHO05D007587 5.7e-59 232.6 309 43.4
CDE02G0230 Ceratophyllum demersum HOM05D006143 ORTHO05D007587 2.4e-57 227.3 433 35.1
HPP92_003901 Vanilla planifolia HOM05D006143 ORTHO05D007587 1.8e-52 211.1 324 39.2
Rhsim02G0153000 Rhododendron simsii HOM05D006143 ORTHO05D007587 4.1e-49 199.9 182 54.9
RcHm_v2.0_Chr3g0476981 Rosa chinensis HOM05D006143 ORTHO05D007587 4.7e-37 159.8 367 31.9
arahy.Tifrunner.gnm1.ann1.74Q5DQ Arachis hypogaea HOM05D006143 ORTHO05D007587 2.5e-30 137.5 154 44.8
arahy.Tifrunner.gnm1.ann1.VQL787 Arachis hypogaea HOM05D006143 ORTHO05D007587 8.9e-28 129.0 131 49.6
MD10G1285900 Malus domestica HOM05D006143 ORTHO05D007587 1.2e-27 128.6 201 37.8
arahy.Tifrunner.gnm1.ann1.RYY8E4 Arachis hypogaea HOM05D006143 ORTHO05D007587 7.6e-27 125.9 131 48.9
arahy.Tifrunner.gnm1.ann1.Y1II92 Arachis hypogaea HOM05D006143 ORTHO05D007587 7.6e-27 125.9 131 48.9
SEGI_30740 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 2.3e-23 114.4 162 37.0
SEGI_37534 Sequoiadendron giganteum HOM05D006143 ORTHO05D007587 2.3e-23 114.4 162 37.0
TPR.G16261 Trifolium pratense HOM05D006143 ORTHO05D007587 6.2e-21 106.3 316 29.7
arahy.Tifrunner.gnm1.ann1.6ZT1I9 Arachis hypogaea HOM05D006143 ORTHO05D007587 8.1e-21 105.9 118 46.6
Mapoly0071s0015 Marchantia polymorpha HOM05D006143 ORTHO05D007587 4.0e-20 103.6 484 22.9
Nn4g22609 Nelumbo nucifera HOM05D006143 ORTHO05D007587 1.2e-19 102.1 90 64.4
arahy.Tifrunner.gnm1.ann1.Y2C9I0 Arachis hypogaea HOM05D006143 ORTHO05D007587 5.8e-19 99.8 141 42.6
Pp3c13_1090 Physcomitrium patens HOM05D006143 ORTHO05D007587 9.3e-17 92.4 419 23.4
HPP92_003900 Vanilla planifolia HOM05D006143 ORTHO05D007587 5.6e-14 83.2 122 41.0
HPP92_003867 Vanilla planifolia HOM05D006143 ORTHO05D007587 7.3e-14 82.8 253 28.1
AagrBONN_evm.TU.Sc2ySwM_344.2178 Anthoceros agrestis HOM05D006143 ORTHO05D007587 1.6e-13 81.6 411 24.6
MD10G1285700 Malus domestica HOM05D006143 ORTHO05D007587 4.5e-11 73.6 77 51.9
VMungo0251G1903 Vigna mungo HOM05D006143 ORTHO05D007587 4.2e-09 67.0 131 35.9
SHI28510 Sapria himalayana HOM05D006143 ORTHO05D007587 7.1e-09 66.2 83 41.0
MD10G1285800 Malus domestica HOM05D006143 ORTHO05D007587 1.6e-08 65.1 54 50.0
SMO117G0244 Selaginella moellendorffii HOM05D006143 ORTHO05D007587 2.1e-08 64.7 161 29.2
Actinidia07619 Actinidia chinensis HOM05D006143 ORTHO05D007587 7.9e-08 62.8 92 35.9


User provided reference genes

Program Settings