Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 9.4e-98 360.1 176 100.0
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.1e-73 279.3 172 76.7
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 4.2e-66 255.0 173 72.8
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 4.2e-66 255.0 177 70.6
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 3.4e-63 245.4 175 66.3
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 7.5e-63 244.2 175 66.9
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 4.9e-62 241.5 175 65.7
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 4.9e-62 241.5 174 66.1
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 6.3e-62 241.1 171 69.6
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.1e-61 240.4 173 68.2
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 3.1e-61 238.8 174 64.9
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 5.4e-61 238.0 171 63.2
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.2e-60 236.9 177 63.8
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.6e-60 236.5 175 65.7
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.7e-60 235.7 184 64.1
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 4.5e-60 235.0 180 62.2
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.0e-59 233.8 180 62.2
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 3.8e-59 231.9 171 65.5
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 5.0e-59 231.5 176 63.6
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 5.0e-59 231.5 172 66.3
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 6.6e-59 231.1 176 63.1
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.1e-58 230.3 171 62.0
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.5e-58 229.9 180 62.2
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 3.3e-58 228.8 202 56.4
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 3.3e-58 228.8 179 63.1
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 4.3e-58 228.4 202 55.9
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 4.3e-58 228.4 174 62.1
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 7.3e-58 227.6 174 63.8
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 9.5e-58 227.3 175 62.9
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 1.6e-57 226.5 171 63.2
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.6e-57 226.5 171 63.2
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 2.1e-57 226.1 171 60.2
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.8e-57 225.7 196 57.7
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 6.1e-57 224.6 195 58.5
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.0e-57 224.2 171 62.6
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.0e-56 223.8 174 60.3
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.0e-56 222.2 171 62.6
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 4.0e-56 221.9 171 62.6
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.2e-56 221.5 171 61.4
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.6e-55 219.2 171 63.2
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 2.6e-55 219.2 174 60.3
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 3.4e-55 218.8 195 55.4
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 5.7e-55 218.0 174 59.2
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.2e-54 216.1 180 58.3
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 4.9e-54 214.9 175 61.1
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.4e-53 212.6 171 57.3
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 2.4e-53 212.6 166 60.2
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 4.1e-53 211.8 176 56.8
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 5.4e-53 211.5 178 58.4
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.7e-51 206.5 171 56.1
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.3e-51 206.1 171 57.3
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.0e-51 205.7 171 56.1
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.0e-51 204.9 171 57.3
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 6.6e-51 204.5 171 56.7
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 6.6e-51 204.5 171 57.9
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.6e-51 204.1 119 73.9
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.5e-50 203.4 171 59.6
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 1.5e-50 203.4 177 57.1
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.9e-50 203.0 173 55.5
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 1.9e-50 203.0 171 56.7
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 4.3e-50 201.8 138 65.9
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 7.3e-50 201.1 173 58.4
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 9.5e-50 200.7 171 57.3
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 9.5e-50 200.7 174 56.3
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 9.5e-50 200.7 174 56.3
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 9.5e-50 200.7 171 57.9
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 1.6e-49 199.9 172 58.1
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.6e-49 199.9 171 58.5
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.1e-49 199.5 114 74.6
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 2.8e-49 199.1 164 59.1
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 2.3e-48 196.1 130 66.9
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 3.1e-48 195.7 122 71.3
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 4.0e-48 195.3 138 63.0
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 5.2e-48 194.9 160 55.0
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 8.9e-48 194.1 165 56.4
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.2e-47 193.7 154 61.7
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 2.0e-47 193.0 138 63.8
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.0e-47 193.0 120 71.7
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 2.6e-47 192.6 153 58.2
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 7.5e-47 191.0 112 75.0
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 7.5e-47 191.0 172 56.4
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 9.8e-47 190.7 163 57.7
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 2.9e-46 189.1 176 51.1
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.9e-46 188.3 147 59.2
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 1.1e-45 187.2 159 56.6
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.1e-45 187.2 176 49.4
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.1e-45 187.2 176 49.4
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 2.4e-45 186.0 114 71.1
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 4.1e-45 185.3 163 54.6
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 9.2e-45 184.1 158 54.4
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 9.2e-45 184.1 158 54.4
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 2.0e-44 183.0 173 50.3
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.0e-44 183.0 178 48.9
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.0e-44 183.0 178 48.9
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 2.7e-44 182.6 155 54.8
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 2.7e-44 182.6 155 54.8
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 2.7e-44 182.6 155 54.8
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 2.7e-44 182.6 155 54.8
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 3.5e-44 182.2 173 50.9
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 6.0e-44 181.4 173 50.9
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 7.8e-44 181.0 166 51.8
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 7.8e-44 181.0 166 51.8
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 7.8e-44 181.0 166 51.8
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.0e-43 180.6 170 51.8
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 1.0e-43 180.6 160 53.1
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.0e-43 180.6 133 59.4
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 1.0e-43 180.6 164 51.2
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 1.3e-43 180.3 167 51.5
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 1.7e-43 179.9 167 52.1
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 1.7e-43 179.9 120 66.7
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 3.9e-43 178.7 167 53.9
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 5.0e-43 178.3 166 51.8
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 1.9e-42 176.4 159 56.0
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 2.5e-42 176.0 164 50.6
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.3e-42 175.6 121 62.8
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 5.6e-42 174.9 130 61.5
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 7.3e-42 174.5 171 50.3
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 9.5e-42 174.1 114 68.4
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.5e-42 174.1 114 67.5
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.2e-41 173.7 161 55.3
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 2.1e-41 172.9 130 58.5
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 2.1e-41 172.9 146 58.9
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 3.6e-41 172.2 134 56.7
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.7e-41 171.8 122 61.5
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 6.2e-41 171.4 171 51.5
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.4e-40 170.2 197 45.2
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 3.1e-40 169.1 173 49.7
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 4.0e-40 168.7 154 53.2
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.8e-40 167.9 114 63.2
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.2e-39 167.2 181 47.5
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 1.3e-38 163.7 121 59.5
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.7e-38 163.3 124 57.3
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.7e-38 162.2 120 60.0
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.7e-35 153.3 138 52.2
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.3e-35 152.9 109 61.5
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 3.0e-35 152.5 115 60.0
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 6.6e-35 151.4 116 61.2
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 8.6e-35 151.0 174 44.3
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 1.2e-33 147.1 153 48.4
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 2.8e-33 146.0 172 44.2
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.4e-32 143.7 102 59.8
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.8e-32 143.3 146 46.6
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.2e-31 140.6 172 43.6
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.7e-30 136.7 96 63.5
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.4e-29 133.7 116 52.6
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.1e-29 132.1 96 61.5
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 9.2e-29 131.0 122 48.4
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.6e-28 128.6 93 61.3
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 3.9e-27 125.6 109 55.0
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.3e-26 122.5 109 55.0
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.1e-25 119.8 84 60.7
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 2.8e-25 119.4 128 47.7
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 3.6e-25 119.0 111 47.7
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 2.4e-24 116.3 119 47.1
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 3.1e-24 115.9 111 47.7
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 1.2e-23 114.0 159 38.4
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 2.2e-22 109.8 123 42.3
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.1e-21 107.5 153 40.5
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.4e-21 107.1 107 48.6
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.9e-21 106.7 77 59.7
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 2.4e-21 106.3 153 39.9
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.2e-21 105.5 73 65.8
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 9.3e-21 104.4 122 43.4
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.9e-18 96.7 158 36.1
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.3e-17 94.0 68 58.8
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 6.2e-17 91.7 99 50.5
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 1.4e-16 90.5 121 43.0
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 9.9e-15 84.3 128 35.9
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 3.9e-11 72.4 112 36.6
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 1.3e-09 67.4 74 40.5
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 3.7e-09 65.9 43 67.4
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 3.1e-08 62.8 41 61.0


User provided reference genes

Program Settings