Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28916 Actinidia chinensis HOM05D002696 ORTHO05D003940 1.2e-155 553.1 276 100.0
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.5e-54 217.2 164 68.9
Dinv06564 Davidia involucrata HOM05D002696 ORTHO05D003940 1.7e-53 213.8 164 69.5
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 4.2e-52 209.1 164 67.7
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 4.2e-52 209.1 164 67.7
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 1.6e-51 207.2 164 67.1
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 2.1e-51 206.8 165 66.7
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 2.7e-51 206.5 203 56.2
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 3.9e-50 202.6 167 67.1
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 5.1e-50 202.2 165 63.0
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 8.7e-50 201.4 164 64.0
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 1.5e-49 200.7 161 65.2
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 3.3e-49 199.5 164 63.4
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 4.3e-49 199.1 164 64.6
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 7.4e-49 198.4 171 63.2
QL09p005526 Quercus lobata HOM05D002696 ORTHO05D003940 7.4e-49 198.4 164 63.4
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 7.4e-49 198.4 164 63.4
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 9.7e-49 198.0 164 64.0
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 1.3e-48 197.6 165 62.4
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 1.3e-48 197.6 164 61.6
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 2.2e-48 196.8 165 63.0
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 2.8e-48 196.4 163 62.6
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 4.8e-48 195.7 163 62.6
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 4.8e-48 195.7 165 60.6
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 4.8e-48 195.7 165 60.6
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 6.3e-48 195.3 164 64.6
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 8.2e-48 194.9 172 60.5
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 1.4e-47 194.1 165 60.6
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 2.4e-47 193.4 164 61.0
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 2.4e-47 193.4 223 51.1
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 3.1e-47 193.0 171 60.8
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 3.1e-47 193.0 164 62.8
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 3.1e-47 193.0 193 58.0
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 4.1e-47 192.6 164 61.6
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 5.3e-47 192.2 164 61.6
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 6.9e-47 191.8 164 61.6
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 6.9e-47 191.8 164 61.6
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 6.9e-47 191.8 171 60.8
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 9.0e-47 191.4 176 57.4
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 1.2e-46 191.0 192 56.2
FAN03G1343 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.2e-46 191.0 164 61.0
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.2e-46 191.0 164 61.0
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 1.5e-46 190.7 164 62.2
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 1.5e-46 190.7 163 65.0
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 1.5e-46 190.7 164 61.6
Solyc03g093250.2 Solanum lycopersicum HOM05D002696 ORTHO05D003940 2.6e-46 189.9 173 57.2
Lalb_Chr01g0008031 Lupinus albus HOM05D002696 ORTHO05D003940 3.4e-46 189.5 168 60.1
QL09p005491 Quercus lobata HOM05D002696 ORTHO05D003940 3.4e-46 189.5 164 61.0
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 4.5e-46 189.1 164 60.4
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 5.9e-46 188.7 170 61.2
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 5.9e-46 188.7 162 61.1
FAN06G4118 Fragaria x ananassa HOM05D002696 ORTHO05D003940 5.9e-46 188.7 164 60.4
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 1.7e-45 187.2 163 62.0
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 1.7e-45 187.2 163 62.0
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 1.7e-45 187.2 163 62.0
FvH4_7g27370 Fragaria vesca HOM05D002696 ORTHO05D003940 1.7e-45 187.2 164 60.4
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 1.7e-45 187.2 163 61.3
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 1.7e-45 187.2 167 61.7
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 2.2e-45 186.8 163 62.6
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 2.2e-45 186.8 171 59.6
FAN10G0424 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.2e-45 186.8 163 60.1
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 2.9e-45 186.4 163 61.3
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 2.9e-45 186.4 164 60.4
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 2.9e-45 186.4 162 61.1
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 2.9e-45 186.4 171 61.4
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 3.8e-45 186.0 163 62.0
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 3.8e-45 186.0 163 62.0
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 5.0e-45 185.7 165 56.4
Duzib205G1343 Durio zibethinus HOM05D002696 ORTHO05D003940 1.1e-44 184.5 164 59.8
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 1.9e-44 183.7 171 57.9
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 3.2e-44 183.0 171 57.9
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 3.2e-44 183.0 170 58.2
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 4.2e-44 182.6 163 60.1
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 9.4e-44 181.4 171 57.3
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 1.2e-43 181.0 163 60.1
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 1.2e-43 181.0 163 58.9
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 1.2e-43 181.0 163 59.5
FAN06G1128 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.6e-43 180.6 164 59.8
Glyma.03G073736 Glycine max HOM05D002696 ORTHO05D023279 1.6e-43 180.6 158 62.7
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 2.7e-43 179.9 163 60.1
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 2.7e-43 179.9 164 58.5
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 3.6e-43 179.5 164 60.4
FAN06G4003 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.6e-43 179.5 159 59.7
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 7.9e-43 178.3 164 57.3
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 1.0e-42 177.9 170 55.3
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.0e-42 177.9 192 53.1
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 1.0e-42 177.9 192 53.1
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 1.0e-42 177.9 162 58.0
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 1.8e-42 177.2 164 57.3
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 3.0e-42 176.4 170 56.5
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 3.9e-42 176.0 167 55.7
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 5.1e-42 175.6 176 55.7
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 6.7e-42 175.3 163 55.2
TPR.G1877 Trifolium pratense HOM05D002696 ORTHO05D003940 6.7e-42 175.3 172 55.8
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 8.8e-42 174.9 163 58.9
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 8.8e-42 174.9 164 58.5
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 1.1e-41 174.5 163 58.3
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 1.5e-41 174.1 161 59.0
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 2.0e-41 173.7 164 56.7
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 2.0e-41 173.7 164 56.1
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 2.5e-41 173.3 162 55.6
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 2.5e-41 173.3 183 54.1
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 4.3e-41 172.6 164 56.7
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 4.3e-41 172.6 163 57.1
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 4.3e-41 172.6 163 57.7
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 7.4e-41 171.8 164 55.5
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 7.4e-41 171.8 164 54.9
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 9.7e-41 171.4 162 55.6
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 9.7e-41 171.4 163 57.7
Gohir.A07G041900 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.3e-40 171.0 164 57.3
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 1.3e-40 171.0 163 56.4
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 1.7e-40 170.6 176 51.7
Aqoxy7G02846 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 6.3e-40 168.7 176 52.3
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 6.3e-40 168.7 163 56.4
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 8.2e-40 168.3 163 55.8
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 8.2e-40 168.3 163 55.8
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 8.2e-40 168.3 163 55.8
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 8.2e-40 168.3 163 55.8
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 8.2e-40 168.3 163 55.8
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 8.2e-40 168.3 163 55.8
Gohir.D07G046000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.8e-39 167.2 167 57.5
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 2.4e-39 166.8 163 54.6
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 6.9e-39 165.2 176 50.0
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 1.2e-38 164.5 164 54.3
FAN06G0900 Fragaria x ananassa HOM05D002696 ORTHO05D003940 5.9e-38 162.2 147 59.2
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 1.4e-36 157.5 143 60.1
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 2.5e-36 156.8 164 52.4
FvH4_7g27350 Fragaria vesca HOM05D002696 ORTHO05D003940 3.2e-36 156.4 163 53.4
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 5.5e-36 155.6 163 49.7
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 5.5e-36 155.6 165 50.3
SHI28001 Sapria himalayana HOM05D002696 ORTHO05D000023 1.6e-35 154.1 149 55.7
FAN06G1881 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.6e-35 152.9 144 56.2
MBI01_g21231_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 7.9e-35 151.8 151 53.0
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 6.7e-34 148.7 165 51.5
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 2.2e-32 143.7 161 48.4
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 2.2e-32 143.7 161 48.4
FvH4_7g27644 Fragaria vesca HOM05D002696 ORTHO05D003940 3.7e-32 142.9 155 52.9
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 4.8e-32 142.5 161 46.6
SMO076G0001 Selaginella moellendorffii HOM05D002696 ORTHO05D003940 1.8e-31 140.6 162 46.9
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 4.5e-30 136.0 160 45.0
HPP92_013628 Vanilla planifolia HOM05D002696 ORTHO05D003940 2.9e-29 133.3 95 68.4
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.4e-28 131.0 131 55.7
AagrBONN_evm.TU.Sc2ySwM_344.3408 Anthoceros agrestis HOM05D002696 ORTHO05D003940 1.2e-27 127.9 160 44.4
FAN06G4966 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.6e-27 127.5 179 45.3
FAN06G1338 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.6e-27 126.3 162 48.1
Aqoxy1G02713 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 3.9e-26 122.9 128 53.1
arahy.Tifrunner.gnm1.ann1.ZQ9YZD Arachis hypogaea HOM05D002696 ORTHO05D003940 1.3e-24 117.9 152 48.0
Mapoly0005s0174 Marchantia polymorpha HOM05D002696 ORTHO05D003940 6.3e-24 115.5 165 38.8
Cfa024848 Carpinus fangiana HOM05D002696 ORTHO05D003940 9.1e-23 111.7 196 34.7
FAN06G2222 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.9e-20 104.0 96 59.4
MCO13G593 Micromonas commoda HOM05D002696 ORTHO05D003940 3.2e-20 103.2 159 39.0
MBI18_g37877_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 9.4e-20 101.7 70 68.6
Aqoxy5G01723 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 2.7e-19 100.1 66 72.7
FvH4_7g28371 Fragaria vesca HOM05D002696 ORTHO05D003940 1.8e-18 97.4 109 51.4
PRCOL_00001774 Prasinoderma coloniale HOM05D002696 ORTHO05D003940 8.8e-18 95.1 144 38.2
Cre02.g086650 Chlamydomonas reinhardtii HOM05D002696 ORTHO05D003940 1.8e-15 87.4 167 32.3
CBR_g40806 Chara braunii HOM05D002696 ORTHO05D003940 1.0e-13 81.6 136 37.5
HPP92_013637 Vanilla planifolia HOM05D002696 ORTHO05D003940 3.2e-12 76.6 140 37.1
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 5.5e-12 75.9 139 34.5
Actinidia21287 Actinidia chinensis HOM05D002696 ORTHO05D023279 3.6e-11 73.2 43 79.1
FvH4_7g28372 Fragaria vesca HOM05D002696 ORTHO05D023279 1.0e-10 71.6 48 70.8
MBI08_g12687_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 1.3e-08 64.7 120 35.0
MBI01_g14217_MAGBIO Magnolia biondii HOM05D000206 ORTHO05D000232 2.8e-08 63.5 48 58.3
Aqoxy5G03028 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 3.1e-07 60.1 35 80.0
CBR_g40808 Chara braunii HOM05D002696 ORTHO05D003940 4.1e-07 59.7 137 35.8
MBI14_g23360_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 1.6e-06 57.8 71 45.1
Cfa024809 Carpinus fangiana HOM05D004102 ORTHO05D005307 2.0e-06 57.4 106 32.1
THA.LOC104821415 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 3.5e-06 56.6 40 70.0
MBI11_g16498_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 4.5e-06 56.2 71 46.5
Solyc03g093260.3 Solanum lycopersicum HOM05D002696 ORTHO05D003940 4.5e-06 56.2 71 47.9
Atru.chr8.1045 Acer truncatum HOM05D002696 ORTHO05D003940 7.7e-06 55.5 60 53.3
MBI12_g17812_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 7.7e-06 55.5 71 45.1
MBI18_g00540_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 7.7e-06 55.5 71 46.5


User provided reference genes

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