Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 0.0e+00 1219.1 640 100.0
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 8.3e-229 797.3 645 69.3
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.2e-222 776.9 643 67.2
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 3.4e-214 748.8 579 69.9
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 1.3e-210 736.9 577 65.9
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 1.6e-179 633.6 622 58.4
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 3.6e-179 632.5 553 59.0
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.0e-170 604.4 598 57.4
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 2.3e-170 603.2 545 57.1
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 6.5e-165 585.1 545 59.4
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 5.5e-164 582.0 535 58.1
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 5.5e-164 582.0 536 56.5
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 7.2e-164 581.6 545 57.8
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 8.8e-162 574.7 530 57.7
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 1.7e-160 570.5 514 54.5
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 2.8e-160 569.7 548 56.8
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 2.8e-160 569.7 544 58.5
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 8.2e-160 568.2 538 55.2
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 1.1e-159 567.8 548 56.8
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 5.3e-159 565.5 541 53.6
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 1.7e-157 560.5 533 54.2
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.1e-156 557.8 584 53.1
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.5e-156 557.4 531 57.1
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 7.2e-156 555.1 543 53.0
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 1.6e-155 553.9 548 55.8
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.3e-152 544.3 570 53.2
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 5.4e-151 538.9 570 53.9
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 1.6e-150 537.3 528 55.9
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.7e-150 536.6 534 51.3
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 2.7e-150 536.6 608 46.9
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 1.0e-149 534.6 579 52.7
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 5.0e-149 532.3 535 55.5
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 6.1e-147 525.4 602 52.2
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 8.0e-147 525.0 553 52.8
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.6e-145 520.0 537 53.6
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 3.1e-143 513.1 583 50.4
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 9.1e-143 511.5 520 50.4
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 7.7e-142 508.4 536 50.4
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.7e-141 507.3 607 49.6
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 1.1e-140 504.6 465 57.6
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 9.5e-140 501.5 566 47.2
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 3.6e-139 499.6 564 47.5
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 4.7e-139 499.2 525 47.8
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.7e-139 499.2 564 47.5
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 4.7e-139 499.2 620 45.3
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.0e-138 498.0 564 47.3
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 8.9e-138 495.0 554 51.3
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 2.9e-136 490.0 542 50.9
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 5.4e-135 485.7 641 47.9
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 5.4e-135 485.7 562 49.1
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 3.5e-134 483.0 577 49.2
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 3.5e-134 483.0 528 50.8
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 1.3e-133 481.1 551 49.7
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.7e-133 480.7 564 48.6
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 2.3e-133 480.3 549 50.6
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 5.0e-133 479.2 591 48.6
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 5.0e-133 479.2 522 52.1
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.1e-132 478.0 578 45.5
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.6e-131 474.2 546 50.7
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 8.0e-131 471.9 575 49.2
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.2e-129 468.0 589 47.7
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 1.2e-129 468.0 563 48.1
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 9.8e-129 464.9 549 45.4
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.4e-127 461.1 551 48.3
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 3.2e-127 459.9 558 48.0
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 3.0e-125 453.4 582 44.3
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 3.9e-125 453.0 516 49.2
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 8.6e-125 451.8 558 47.7
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 5.6e-124 449.1 516 49.0
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 1.2e-123 448.0 547 47.0
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 6.8e-122 442.2 553 48.1
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.8e-122 442.2 542 45.4
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 6.4e-120 435.6 394 58.1
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 1.1e-119 434.9 618 40.9
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 7.1e-119 432.2 547 43.9
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.6e-118 431.0 499 46.9
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.1e-118 430.6 586 45.4
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 1.1e-116 424.9 562 46.4
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 9.5e-116 421.8 578 47.2
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 2.1e-115 420.6 496 47.2
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.8e-114 417.5 396 60.4
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.2e-113 414.8 369 57.7
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 2.6e-113 413.7 401 53.9
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 2.9e-112 410.2 491 46.2
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 1.3e-104 384.8 462 48.9
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 4.9e-104 382.9 586 43.7
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.2e-103 380.2 527 40.4
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 9.3e-103 378.6 566 40.1
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.6e-102 377.9 467 48.0
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 1.5e-100 371.3 473 48.8
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 2.5e-100 370.5 372 57.8
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.6e-99 367.9 340 53.5
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 1.5e-92 344.7 519 38.9
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 3.6e-91 340.1 539 37.1
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 3.1e-90 337.0 245 65.7
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 3.2e-87 327.0 520 35.2
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 2.3e-85 320.9 518 37.6
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 3.9e-77 293.5 423 41.1
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 3.1e-74 283.9 310 49.4
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 5.9e-73 279.6 618 32.0
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.8e-69 268.1 309 46.9
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 7.4e-68 262.7 257 51.8
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 2.4e-66 257.7 359 41.5
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 5.5e-63 246.5 768 28.1
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 2.9e-48 197.6 152 63.2
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 5.3e-42 176.8 340 41.5
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 8.8e-37 159.5 731 24.9
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 8.8e-37 159.5 108 66.7
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 3.4e-36 157.5 117 59.8
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 8.3e-35 152.9 132 53.8
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.1e-34 152.5 160 60.0
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 3.1e-34 151.0 192 50.0
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.5e-33 147.1 117 58.1
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.0e-32 146.0 107 57.9
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.9e-32 144.4 101 60.4
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 6.5e-32 143.3 152 49.3
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 1.2e-30 139.0 155 47.1
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 1.2e-30 139.0 107 55.1
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 6.1e-30 136.7 109 55.0
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 2.3e-29 134.8 145 48.3
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 5.7e-28 130.2 114 53.5
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 2.7e-25 121.3 100 52.0
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 1.7e-24 118.6 488 26.0
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 2.8e-22 111.3 90 53.3
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 1.4e-21 109.0 90 57.8
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 5.2e-21 107.1 140 42.9
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.2e-20 105.9 104 46.2
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 7.5e-20 103.2 69 50.7
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 7.5e-20 103.2 86 58.1
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.7e-19 100.9 110 40.0
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 5.4e-18 97.1 110 38.2
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 7.0e-18 96.7 95 49.5
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 3.3e-15 87.8 65 56.9
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 2.8e-14 84.7 99 40.4
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 2.3e-13 81.6 80 45.0
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 3.1e-13 81.3 239 30.1
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 8.9e-13 79.7 86 44.2
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.6e-12 78.2 64 50.0
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.8e-12 76.3 75 44.0
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.3e-11 75.9 70 47.1
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 4.9e-11 73.9 64 46.9
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.4e-10 70.5 104 32.7
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.4e-10 70.5 104 32.7
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 2.7e-09 68.2 44 70.5
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.0e-08 66.2 53 49.1
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 1.3e-08 65.9 53 58.5
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.3e-08 65.9 106 32.1
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.7e-08 65.5 204 26.0
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.5e-07 62.4 47 59.6
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 4.3e-07 60.8 57 47.4
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 7.3e-07 60.1 42 59.5
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 6.2e-06 57.0 63 49.2


User provided reference genes

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