Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 9.8e-83 310.1 155 100.0
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 5.8e-75 284.3 155 91.6
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 4.9e-74 281.2 155 88.4
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 4.9e-74 281.2 155 90.3
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 8.3e-74 280.4 155 90.3
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 1.9e-73 279.3 155 87.7
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 2.4e-73 278.9 155 87.7
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 3.5e-72 275.0 155 86.5
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 7.8e-72 273.9 155 84.5
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 1.7e-71 272.7 154 85.7
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 8.6e-71 270.4 156 87.2
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 8.6e-71 270.4 156 87.2
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 1.5e-70 269.6 155 82.6
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.5e-70 268.9 155 85.8
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 3.3e-70 268.5 155 83.2
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 4.3e-70 268.1 155 83.9
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 5.6e-70 267.7 155 83.9
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 7.3e-70 267.3 155 82.6
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 1.2e-69 266.5 155 83.2
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 1.2e-69 266.5 155 85.2
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 1.2e-69 266.5 155 83.9
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 4.7e-69 264.6 155 84.5
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 4.7e-69 264.6 155 81.9
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 8.0e-69 263.8 155 83.9
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.1e-68 263.5 155 80.0
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 2.3e-68 262.3 155 82.6
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.9e-68 260.4 155 78.7
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.2e-67 260.0 155 81.9
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.2e-67 260.0 155 78.7
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 1.2e-67 260.0 155 78.7
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.5e-67 259.6 155 82.6
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.4e-67 258.5 155 78.1
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.4e-67 258.1 155 81.9
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 4.4e-67 258.1 155 82.6
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.7e-66 256.1 155 82.6
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 2.9e-66 255.4 155 80.0
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 1.9e-65 252.7 155 79.4
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.9e-65 252.7 155 78.1
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 5.4e-65 251.1 155 77.4
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.2e-64 250.0 155 74.8
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.6e-64 249.6 155 74.8
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 2.7e-64 248.8 155 76.8
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 2.7e-64 248.8 155 77.4
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 77.4
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 6.0e-64 247.7 155 77.4
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.3e-63 246.5 155 77.4
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 1.7e-63 246.1 155 75.5
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 2.3e-63 245.7 155 76.1
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 3.0e-63 245.4 155 76.8
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 8.6e-63 243.8 155 76.8
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 1.5e-62 243.0 155 76.8
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 1.5e-62 243.0 155 76.8
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 78.7
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 2.5e-62 242.3 155 75.5
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 3.3e-62 241.9 155 74.2
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.6e-62 241.1 155 74.8
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 7.3e-62 240.7 155 76.8
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.2e-61 240.0 155 74.2
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 1.6e-61 239.6 155 73.5
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 2.1e-61 239.2 155 75.5
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.8e-61 238.8 155 74.2
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.8e-61 238.8 155 74.8
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.8e-61 238.8 155 74.8
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 2.8e-61 238.8 155 74.2
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 72.9
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.1e-60 236.9 174 67.2
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 1.4e-60 236.5 152 73.7
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 74.2
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 72.9
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 2.3e-60 235.7 155 72.3
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 72.3
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 75.5
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 3.1e-60 235.3 153 75.2
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 74.2
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 4.0e-60 235.0 145 78.6
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 1.2e-59 233.4 155 72.9
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 72.3
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 72.3
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 1.7e-58 229.6 155 71.6
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 2.2e-58 229.2 155 71.6
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 3.7e-58 228.4 214 57.9
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 3.7e-58 228.4 155 73.5
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 1.1e-57 226.9 154 70.8
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 1.1e-57 226.9 152 73.0
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 1.1e-57 226.9 147 75.5
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 1.9e-57 226.1 156 72.4
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 2.4e-57 225.7 155 69.0
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 2.4e-57 225.7 150 72.0
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.1e-57 224.9 150 76.7
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 4.1e-57 224.9 155 71.6
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 9.2e-57 223.8 156 71.8
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 9.2e-57 223.8 152 73.0
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 2.1e-56 222.6 145 73.1
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 2.7e-56 222.2 136 81.6
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 3.5e-56 221.9 155 69.0
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.8e-56 220.7 150 76.0
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 3.0e-55 218.8 144 73.6
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 3.9e-55 218.4 156 69.2
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 5.1e-55 218.0 147 72.1
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 1.5e-54 216.5 156 69.9
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 3.3e-54 215.3 147 70.1
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 4.3e-54 214.9 156 67.9
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 2.1e-53 212.6 155 69.7
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 2.1e-53 212.6 153 66.0
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.1e-52 210.3 127 78.0
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 5.2e-52 208.0 131 76.3
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 1.2e-51 206.8 152 68.4
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 4.4e-51 204.9 188 57.4
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 2.2e-50 202.6 155 65.2
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.4e-49 199.9 156 63.5
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.9e-49 199.5 151 62.9
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 2.3e-47 192.6 154 59.1
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 2.3e-47 192.6 154 59.7
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 3.0e-47 192.2 154 59.7
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 3.0e-47 192.2 153 60.1
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 3.9e-47 191.8 154 59.1
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 4.3e-46 188.3 128 68.8
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.6e-45 186.4 163 58.9
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 4.8e-45 184.9 149 61.1
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 6.9e-44 181.0 114 78.9
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 3.8e-42 175.3 153 56.9
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 2.7e-40 169.1 146 58.9
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 2.7e-40 169.1 99 81.8
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 2.5e-38 162.5 109 68.8
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 2.5e-38 162.5 91 86.8
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 3.3e-38 162.2 109 69.7
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 4.3e-38 161.8 103 74.8
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 8.1e-37 157.5 104 72.1
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 1.5e-35 153.3 144 51.4
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 1.6e-32 143.3 83 81.9
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 1.8e-31 139.8 109 66.1
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 2.5e-30 136.0 147 51.7
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 2.1e-29 132.9 148 46.6
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 1.5e-27 126.7 152 46.1
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.9e-25 119.8 152 47.4
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.7e-21 105.5 61 83.6
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.7e-21 105.5 61 83.6
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 2.4e-20 102.8 130 45.4
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 4.0e-20 102.1 153 37.9
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 4.5e-19 98.6 68 72.1
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 3.5e-16 89.0 48 83.3
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.6e-16 88.6 68 63.2
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 1.4e-12 77.0 139 30.9
Hund09752 Selenicereus undatus HOM05D005446 ORTHO05D006597 9.7e-06 54.3 40 60.0


User provided reference genes

Program Settings