Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 0.0e+00 1194.5 697 100.0
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 2.4e-285 985.3 658 84.2
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.6e-284 981.9 666 83.3
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 5.6e-279 964.1 676 83.4
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 5.6e-279 964.1 728 77.9
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 3.2e-274 948.3 676 77.5
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 7.4e-271 937.2 666 80.6
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 8.7e-264 913.7 664 79.5
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.0e-256 890.2 649 74.9
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 6.7e-256 887.5 649 74.0
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 4.3e-255 884.8 648 74.4
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 3.4e-252 875.2 637 74.6
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 6.5e-251 870.9 629 77.1
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.0e-248 863.6 647 73.1
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 1.5e-247 859.8 648 73.6
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 3.7e-246 855.1 609 75.7
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 5.9e-244 847.8 650 72.0
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 1.0e-243 847.0 675 69.6
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 2.2e-243 845.9 654 75.2
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 5.0e-243 844.7 654 70.5
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 7.2e-242 840.9 612 73.2
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 7.2e-242 840.9 654 74.0
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 1.6e-241 839.7 623 73.4
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.6e-241 838.2 633 71.2
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 7.9e-241 837.4 650 71.7
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 7.9e-241 837.4 633 71.2
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 3.9e-240 835.1 647 71.1
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 2.0e-239 832.8 646 68.9
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 2.6e-239 832.4 655 73.6
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 6.3e-238 827.8 652 70.9
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 1.1e-237 827.0 654 73.4
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 1.1e-237 827.0 655 73.6
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 1.2e-236 823.5 612 76.1
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 1.5e-236 823.2 654 73.2
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 7.7e-236 820.8 613 72.3
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.2e-235 819.3 613 72.3
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 5.0e-235 818.1 649 70.7
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 1.6e-233 813.1 653 71.4
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 3.6e-233 812.0 615 72.2
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 7.9e-233 810.8 652 71.6
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 1.0e-232 810.4 610 71.3
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 3.0e-232 808.9 651 72.5
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 5.2e-232 808.1 649 69.5
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 2.0e-231 806.2 654 71.6
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 3.3e-231 805.4 620 74.2
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 4.4e-231 805.1 603 71.0
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.7e-231 804.7 526 84.4
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 7.4e-231 804.3 654 71.4
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.7e-230 803.1 652 70.4
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 2.2e-230 802.7 647 67.4
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 2.8e-230 802.4 652 71.3
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 1.4e-229 800.0 657 67.1
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 5.3e-229 798.1 650 71.1
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 1.0e-227 793.9 649 70.9
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 2.9e-227 792.3 614 73.3
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 8.5e-227 790.8 692 68.4
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 4.2e-226 788.5 654 71.6
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 7.2e-226 787.7 640 68.4
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.7e-225 785.8 652 67.8
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 3.6e-225 785.4 614 69.2
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 4.7e-225 785.0 651 70.7
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 6.1e-225 784.6 651 67.6
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 1.0e-224 783.9 618 70.6
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.4e-224 783.5 641 70.7
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 3.0e-224 782.3 605 72.1
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 3.3e-223 778.9 651 67.3
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 3.3e-223 778.9 610 68.5
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 1.7e-222 776.5 655 66.3
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.8e-222 775.8 687 64.0
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 3.7e-222 775.4 644 67.2
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 6.3e-222 774.6 649 70.0
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 6.3e-222 774.6 649 70.0
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 6.3e-222 774.6 651 66.7
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 3.1e-221 772.3 652 69.5
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 7.7e-220 767.7 645 64.8
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 2.9e-219 765.8 646 68.6
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 3.8e-219 765.4 613 68.5
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 8.5e-219 764.2 650 68.8
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.5e-218 763.5 650 68.8
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.9e-218 763.1 665 67.4
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.9e-218 763.1 650 69.1
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.5e-218 762.7 627 68.1
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.2e-218 761.9 650 68.8
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.2e-217 760.4 646 65.0
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 2.1e-217 759.6 656 68.3
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 4.7e-217 758.4 620 66.8
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 6.8e-216 754.6 646 64.7
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 6.8e-216 754.6 646 64.7
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 6.8e-216 754.6 646 64.7
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 1.2e-215 753.8 665 64.4
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.4e-215 752.3 650 68.3
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 1.7e-214 750.0 649 64.4
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 5.4e-213 745.0 658 63.7
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 9.1e-213 744.2 610 71.3
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 2.0e-212 743.0 645 63.6
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 5.9e-212 741.5 659 63.3
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 5.0e-211 738.4 640 63.8
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 5.0e-211 738.4 621 64.7
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 9.5e-210 734.2 685 65.1
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 4.7e-209 731.9 574 71.4
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 1.2e-207 727.2 648 62.8
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.7e-206 723.4 627 65.4
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 8.3e-206 721.1 653 65.1
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 9.5e-202 707.6 645 64.7
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 6.6e-195 684.9 544 67.6
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.5e-194 683.7 657 59.7
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 1.9e-194 683.3 556 73.2
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 4.4e-191 672.2 557 67.9
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 8.3e-190 667.9 648 59.0
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 1.2e-188 664.1 523 74.4
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 1.6e-188 663.7 511 75.0
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.5e-186 657.1 653 58.7
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 2.0e-183 646.7 646 57.1
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 2.9e-182 642.9 649 58.7
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.0e-179 634.4 457 73.3
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 3.1e-168 596.3 448 75.4
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.4e-165 586.6 629 54.8
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 6.0e-164 582.0 546 61.5
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 3.0e-155 553.1 462 72.7
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 4.0e-152 542.7 455 72.7
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 2.6e-151 540.0 649 50.7
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 6.2e-145 518.8 638 47.0
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 3.8e-142 509.6 662 50.0
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 8.4e-142 508.4 557 53.1
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 1.9e-138 497.3 492 58.5
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 3.2e-133 479.9 434 60.6
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 5.5e-133 479.2 661 43.1
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 1.4e-117 427.9 337 73.9
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 5.2e-115 419.5 369 62.1
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 1.3e-113 414.8 589 43.1
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 4.2e-109 399.8 655 41.2
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.3e-106 390.2 337 68.0
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 2.9e-102 377.1 644 41.8
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.3e-86 325.1 344 60.8
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.3e-86 324.3 212 88.2
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.1e-75 288.9 222 67.1
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 3.5e-71 273.9 325 53.2
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 3.0e-70 270.8 242 64.5
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 4.0e-67 260.4 642 32.9
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 7.1e-64 249.6 190 65.8
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.3e-62 244.6 168 75.0
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 1.8e-59 235.0 753 30.7
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 1.5e-58 231.9 176 76.7
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.4e-56 225.3 164 75.0
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.6e-55 221.9 161 70.8
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.3e-54 218.0 148 77.7
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.3e-53 214.2 169 68.6
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 1.6e-52 211.8 161 67.7
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 8.4e-49 199.5 151 69.5
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 2.4e-48 198.0 151 69.5
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 2.7e-47 194.5 677 29.5
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.5e-45 188.0 128 78.1
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 3.1e-43 181.0 117 81.2
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 9.3e-40 169.5 148 65.5
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 1.0e-38 166.0 149 63.1
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 6.2e-36 156.8 136 66.2
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 9.3e-32 142.9 92 80.4
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 9.3e-32 142.9 92 80.4
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 9.3e-32 142.9 92 80.4
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 4.3e-29 134.0 92 76.1
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 7.4e-29 133.3 156 55.8
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 2.1e-28 131.7 183 45.4
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.4e-27 129.0 101 66.3
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 5.8e-26 123.6 92 67.4
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.5e-23 114.4 94 67.0
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.5e-21 109.0 94 57.4
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 5.7e-21 107.1 119 55.5
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 7.4e-21 106.7 112 66.1
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 9.7e-21 106.3 97 54.6
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 6.3e-20 103.6 94 55.3
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 9.0e-19 99.8 107 57.0
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.7e-17 95.5 58 84.5
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 5.5e-16 90.5 73 57.5
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 7.2e-16 90.1 75 66.7
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.0e-14 84.7 52 73.1
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 4.3e-13 80.9 82 52.4
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 5.7e-13 80.5 79 48.1
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 1.4e-08 65.9 47 66.0
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 3.2e-08 64.7 48 72.9
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 4.2e-08 64.3 49 59.2
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 9.4e-08 63.2 624 21.8
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 1.6e-07 62.4 47 70.2
MBI11_g46771_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D012379 7.9e-07 60.1 50 58.0
Sopen01g018800 Solanum pennellii HOM05D003777 ORTHO05D393350 1.4e-06 59.3 142 35.2


User provided reference genes

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