Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 0.0e+00 1188.3 614 100.0
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 2.6e-288 995.0 616 85.9
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.0e-276 956.4 602 83.2
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 1.4e-270 936.0 615 80.0
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 1.6e-261 906.0 608 79.8
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 2.6e-259 898.7 618 77.2
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 2.1e-253 879.0 618 76.2
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 1.8e-252 875.9 616 76.9
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.2e-252 874.4 619 74.2
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 1.8e-249 865.9 620 75.5
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 1.8e-249 865.9 629 72.8
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 7.7e-248 860.5 618 74.3
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.7e-247 859.4 618 74.3
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 2.5e-246 855.5 626 74.0
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 2.1e-245 852.4 628 73.9
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 3.6e-245 851.7 618 73.9
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 3.6e-245 851.7 618 73.6
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 1.2e-243 846.7 615 72.2
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 2.6e-243 845.5 619 74.5
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 1.7e-242 842.8 628 71.3
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 4.8e-242 841.3 628 72.9
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 3.1e-241 838.6 618 72.3
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 5.3e-241 837.8 615 72.7
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.6e-240 836.3 638 71.6
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 3.5e-240 835.1 616 72.2
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.7e-239 832.8 628 71.5
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.2e-239 832.4 617 74.6
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 3.2e-238 828.6 618 72.2
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 2.3e-236 822.4 620 71.8
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.8e-236 820.8 627 70.7
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 7.5e-235 817.4 624 71.3
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 2.2e-234 815.8 631 72.6
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 2.4e-233 812.4 619 70.6
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 3.1e-233 812.0 629 71.4
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 2.7e-232 808.9 618 70.4
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 1.3e-231 806.6 614 69.5
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 6.6e-231 804.3 618 71.0
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 8.6e-231 803.9 648 67.4
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 5.5e-230 801.2 614 70.7
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.5e-230 800.4 655 67.3
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 1.2e-229 800.0 628 70.4
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.6e-229 799.7 618 70.7
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.1e-229 799.3 617 70.2
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 2.3e-228 795.8 647 69.1
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 1.2e-227 793.5 617 70.0
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 2.6e-227 792.3 656 66.3
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 1.1e-225 786.9 616 68.7
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.4e-225 786.6 623 70.0
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 7.0e-225 784.3 619 68.3
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 8.6e-223 777.3 602 70.8
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 4.3e-222 775.0 618 69.1
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 9.5e-222 773.9 615 68.9
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 1.2e-221 773.5 600 70.0
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.0e-220 770.4 620 66.9
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 3.4e-219 765.4 628 66.2
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 9.8e-219 763.8 623 67.4
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.7e-218 763.1 618 68.1
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 9.2e-217 757.3 638 66.3
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 6.0e-216 754.6 640 65.8
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.7e-215 753.1 529 76.0
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 3.0e-215 752.3 618 65.7
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 2.5e-214 749.2 614 67.8
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 6.2e-213 744.6 616 66.4
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 2.3e-212 742.7 622 65.0
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 6.8e-212 741.1 619 66.7
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.2e-211 740.3 592 67.2
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-211 740.0 619 66.4
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 2.9e-210 735.7 617 65.6
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 2.9e-210 735.7 654 62.1
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 8.3e-210 734.2 619 66.1
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.9e-209 733.0 628 65.9
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 3.2e-209 732.3 615 64.7
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 4.1e-209 731.9 619 65.6
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 5.4e-209 731.5 569 69.9
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 9.2e-209 730.7 558 70.8
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 9.2e-209 730.7 618 65.5
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 4.6e-208 728.4 638 63.0
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 1.0e-207 727.2 634 64.7
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 1.3e-207 726.9 563 68.4
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.3e-207 726.1 614 64.5
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 3.9e-207 725.3 614 64.5
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 5.1e-207 724.9 615 65.4
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.5e-206 723.4 614 64.3
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.6e-205 719.9 618 64.4
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 3.6e-205 718.8 619 65.1
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 1.4e-204 716.8 613 63.9
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 8.9e-204 714.1 586 67.1
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 5.8e-203 711.4 610 65.1
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 7.5e-203 711.1 633 64.9
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.6e-200 703.4 627 63.3
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 2.1e-200 703.0 555 69.2
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 1.1e-198 697.2 623 62.4
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 4.9e-194 681.8 486 73.3
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 8.4e-194 681.0 620 61.0
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 9.2e-193 677.6 626 62.0
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 1.6e-192 676.8 619 61.1
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 5.1e-191 671.8 562 64.4
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 5.8e-187 658.3 624 61.1
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 5.6e-182 641.7 528 65.7
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 4.2e-177 625.5 620 58.1
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 4.2e-177 625.5 561 62.4
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 6.7e-175 618.2 621 57.0
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.3e-173 614.0 398 81.2
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 3.4e-171 605.9 596 60.7
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 2.5e-158 563.1 516 60.3
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.4e-153 547.4 622 54.7
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 5.5e-153 545.4 339 82.6
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 6.1e-152 542.0 319 86.5
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 7.9e-152 541.6 339 80.8
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 7.2e-145 518.5 610 51.3
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.8e-140 503.8 507 57.0
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 9.1e-140 501.5 436 63.3
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 1.5e-137 494.2 554 52.9
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 2.7e-136 490.0 337 74.5
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 3.6e-136 489.6 518 54.6
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.0e-134 483.8 400 67.5
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 8.9e-111 405.2 402 59.0
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 1.1e-108 398.3 655 40.2
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 3.7e-93 346.7 374 55.6
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.0e-91 339.3 308 64.9
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 2.1e-88 330.9 196 87.2
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 3.6e-88 330.1 278 65.5
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 6.8e-87 325.9 537 40.0
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 9.9e-86 322.0 323 57.6
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 1.1e-84 318.5 274 64.2
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-84 318.5 365 51.2
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 3.4e-78 297.0 231 69.3
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 4.4e-78 296.6 670 35.5
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 4.6e-75 286.6 275 60.7
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.4e-69 266.2 241 60.2
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.4e-68 264.2 282 56.7
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 3.0e-66 257.3 226 58.4
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 5.3e-63 246.5 274 54.4
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 1.2e-62 245.4 280 53.9
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 3.4e-62 243.8 274 52.6
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 5.8e-62 243.0 272 54.8
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 8.4e-61 239.2 254 55.1
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 2.4e-55 221.1 273 50.2
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 4.9e-53 213.4 731 28.2
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.5e-52 211.1 141 79.4
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.8e-50 204.9 263 48.3
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.1e-47 195.7 106 91.5
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.4e-47 195.3 149 71.1
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-47 194.5 119 80.7
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.9e-45 187.6 151 69.5
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 8.7e-42 176.0 385 35.1
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.7e-40 170.6 165 59.4
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 8.2e-40 169.5 320 37.2
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.4e-39 168.7 210 54.8
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.4e-39 168.7 110 77.3
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 2.2e-37 161.4 255 38.8
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.9e-37 161.0 202 48.5
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 1.8e-34 151.8 171 52.0
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 7.4e-33 146.4 75 98.7
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.7e-32 145.2 239 39.7
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 1.7e-32 145.2 75 98.7
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 2.2e-32 144.8 81 92.6
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 2.2e-29 134.8 126 61.9
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.2e-29 134.8 159 52.2
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 5.5e-28 130.2 139 54.7
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.0e-26 125.9 174 43.7
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 4.4e-25 120.6 289 37.0
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 7.0e-23 113.2 113 56.6
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 2.9e-21 107.8 124 43.5
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 6.5e-21 106.7 122 54.1
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.2e-19 102.4 252 31.3
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 5.7e-17 93.6 141 44.7
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 1.7e-13 82.0 77 57.1
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 1.1e-12 79.3 107 47.7
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 8.8e-10 69.7 139 42.4
MBI07_g38547_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.4e-09 67.8 74 48.6
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 5.7e-09 67.0 59 57.6
MBI01_g03586_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 5.7e-09 67.0 72 50.0
MBI13_g41189_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 5.7e-09 67.0 72 50.0
MBI16_g19191_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.2e-08 65.1 72 48.6
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 2.8e-08 64.7 39 74.4
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 1.1e-07 62.8 47 63.8
PSO561G0043 Papaver somniferum HOM05D003724 ORTHO05D004367 1.8e-07 62.0 93 47.3
Ca_24313_v3 Cicer arietinum L. HOM05D000703 ORTHO05D004367 2.4e-07 61.6 60 60.0
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 4.1e-07 60.8 38 89.5
Sopen05g010660 Solanum pennellii HOM05D003724 ORTHO05D004367 4.1e-07 60.8 54 61.1
MBI13_g14579_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 7.0e-07 60.1 62 53.2
Ah.02g111740 Amaranthus hybridus HOM05D003315 ORTHO05D003407 1.2e-06 59.3 55 58.2
Ah.16g100850 Amaranthus hybridus HOM05D003315 ORTHO05D003407 1.2e-06 59.3 55 58.2
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 1.2e-06 59.3 38 86.8
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 5.9e-06 57.0 73 45.2


User provided reference genes

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