Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AagrBONN_evm.TU.Sc2ySwM_117.2303 Anthoceros agrestis HOM05D003481 ORTHO05D004001 1.2e-309 1065.8 588 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 1.1e-195 687.2 600 71.7
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 4.9e-135 485.7 674 50.9
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 3.8e-119 433.0 630 48.9
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 6.1e-117 425.6 561 51.2
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 1.9e-110 404.1 589 44.8
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.0e-108 398.3 600 44.0
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 6.7e-108 395.6 548 46.5
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 3.3e-107 393.3 585 44.8
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 9.7e-107 391.7 562 44.3
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 1.7e-106 391.0 559 43.8
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 2.2e-106 390.6 588 43.2
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 3.7e-106 389.8 575 43.0
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 1.1e-105 388.3 578 43.6
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 1.4e-105 387.9 575 43.1
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 2.4e-105 387.1 589 43.5
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 4.1e-105 386.3 610 42.5
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 7.0e-105 385.6 604 42.4
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 9.1e-105 385.2 566 45.1
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.2e-104 384.8 592 43.1
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.5e-104 384.4 602 42.7
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 2.0e-104 384.0 592 43.1
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 2.0e-104 384.0 592 43.1
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 2.6e-104 383.6 587 44.3
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 4.5e-104 382.9 601 42.9
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 5.9e-104 382.5 587 43.1
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 5.9e-104 382.5 608 41.6
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 7.7e-104 382.1 601 43.1
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 1.0e-103 381.7 605 42.8
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.0e-103 381.7 599 42.4
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 1.3e-103 381.3 586 42.7
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 1.3e-103 381.3 607 40.9
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 1.7e-103 380.9 599 42.2
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 1.7e-103 380.9 596 43.0
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 2.2e-103 380.6 594 44.4
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 2.9e-103 380.2 608 41.9
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 5.0e-103 379.4 597 41.7
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 6.5e-103 379.0 595 42.5
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 6.5e-103 379.0 590 42.2
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 8.5e-103 378.6 578 42.6
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 1.1e-102 378.3 603 42.8
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.9e-102 377.5 570 42.6
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 2.5e-102 377.1 571 42.4
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 2.5e-102 377.1 595 42.2
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 2.5e-102 377.1 607 41.7
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 2.5e-102 377.1 592 42.2
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 3.2e-102 376.7 624 41.5
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 3.2e-102 376.7 605 41.3
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 3.2e-102 376.7 647 40.6
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 4.2e-102 376.3 611 41.6
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 2.1e-101 374.0 580 42.9
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 4.7e-101 372.9 603 40.8
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 6.1e-101 372.5 605 41.3
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 8.0e-101 372.1 600 41.7
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 1.4e-100 371.3 561 43.5
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 2.3e-100 370.5 568 43.8
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 2.3e-100 370.5 588 41.2
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 3.0e-100 370.2 533 45.4
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 6.7e-100 369.0 618 40.9
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 8.8e-100 368.6 558 43.4
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 1.1e-99 368.2 606 40.9
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 3.3e-99 366.7 586 42.0
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 4.4e-99 366.3 611 41.1
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 7.4e-99 365.5 602 40.2
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 9.7e-99 365.2 595 40.5
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.3e-98 364.8 594 40.4
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 1.3e-98 364.8 599 41.7
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 1.3e-98 364.8 595 40.3
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 2.2e-98 364.0 605 41.3
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.7e-98 363.2 582 42.4
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 6.3e-98 362.5 574 42.0
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 8.2e-98 362.1 595 42.5
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 8.2e-98 362.1 602 40.7
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 8.2e-98 362.1 596 41.1
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 3.1e-97 360.1 590 40.3
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 5.3e-97 359.4 654 39.0
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 5.3e-97 359.4 598 41.8
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 5.3e-97 359.4 570 42.5
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 2.0e-96 357.5 592 40.2
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 3.5e-96 356.7 584 40.8
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 5.9e-96 355.9 578 40.3
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 3.2e-94 350.1 590 39.2
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 3.2e-94 350.1 593 38.8
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 1.2e-93 348.2 674 37.1
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 2.7e-93 347.1 596 39.1
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.6e-93 346.7 583 41.0
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 4.7e-93 346.3 583 40.8
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 6.1e-93 345.9 598 38.8
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 8.0e-93 345.5 578 41.0
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 1.0e-92 345.1 604 39.7
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 1.4e-92 344.7 599 38.9
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 1.4e-92 344.7 599 38.9
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 1.8e-92 344.4 598 38.8
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 1.8e-92 344.4 591 39.1
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 4.0e-92 343.2 593 39.6
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 4.0e-92 343.2 593 39.5
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 8.8e-92 342.0 601 38.8
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 1.2e-91 341.7 599 38.4
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 1.2e-91 341.7 604 39.2
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 1.5e-91 341.3 605 38.0
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 3.4e-91 340.1 600 38.5
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 1.3e-90 338.2 599 38.2
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 1.7e-90 337.8 600 38.3
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 1.7e-90 337.8 679 36.7
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 2.2e-90 337.4 591 38.7
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 2.8e-90 337.0 583 39.3
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 5.4e-89 332.8 613 38.5
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 5.4e-89 332.8 604 39.1
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 1.0e-87 328.6 621 37.2
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 1.3e-87 328.2 611 38.5
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 1.7e-87 327.8 629 36.4
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 2.2e-87 327.4 623 38.4
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 2.9e-87 327.0 697 35.7
SEGI_29135 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 3.8e-87 326.6 441 49.4
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 3.8e-87 326.6 577 39.7
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 2.6e-83 313.9 568 38.7
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 5.0e-79 299.7 426 44.4
Haze_05982 Corylus avellana HOM05D003481 ORTHO05D004001 3.9e-71 273.5 468 39.7
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 3.4e-59 233.8 602 31.6
CBR_g66144 Chara braunii HOM05D003481 ORTHO05D004001 2.5e-54 217.6 281 55.9
CBR_g45268 Chara braunii HOM05D003481 ORTHO05D004001 5.8e-51 206.5 174 63.8
MBI19_g43313_MAGBIO Magnolia biondii HOM05D003481 ORTHO05D004001 8.6e-47 192.6 292 46.2
Nitab4.5_0001298g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.2e-35 155.6 141 58.2
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 2.0e-35 154.8 563 30.2
Sabra16G0299600 Salix brachista HOM05D003481 ORTHO05D004001 3.8e-34 150.6 267 37.5
CSS0035493 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 6.4e-34 149.8 222 45.0
SHI31589 Sapria himalayana HOM05D003481 ORTHO05D004001 3.2e-33 147.5 116 62.9
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 3.0e-31 141.0 291 33.7
Actinidia29308 Actinidia chinensis HOM05D003481 ORTHO05D004001 3.0e-23 114.4 159 45.9
MCO09G025 Micromonas commoda HOM05D003481 ORTHO05D004001 4.8e-21 107.1 328 29.0
SEGI_21626 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 6.2e-21 106.7 105 56.2
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 6.9e-20 103.2 602 23.3
CSS0048234 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 4.9e-18 97.1 123 43.1
Aqoxy3G00998 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 3.0e-15 87.8 112 48.2
SHI31588 Sapria himalayana HOM05D003481 ORTHO05D004001 3.0e-15 87.8 68 63.2
arahy.Tifrunner.gnm1.ann1.16LSI5 Arachis hypogaea HOM05D003481 ORTHO05D004001 6.7e-15 86.7 223 32.7
RcHm_v2.0_Chr7g0240301 Rosa chinensis HOM05D003481 ORTHO05D004001 2.5e-14 84.7 327 27.2
Nitab4.5_0025882g0010 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.3e-13 82.4 111 46.8
SHI31590 Sapria himalayana HOM05D003481 ORTHO05D004001 2.4e-12 78.2 111 42.3
Actinidia33646 Actinidia chinensis HOM05D003481 ORTHO05D004001 4.1e-12 77.4 93 50.5
Cfa023843 Carpinus fangiana HOM05D003481 ORTHO05D004001 9.0e-12 76.3 357 23.2
Nitab4.5_0001298g0060 Nicotiana tabacum HOM05D003481 ORTHO05D004001 5.0e-10 70.5 148 35.1
Lsat_1_v5_gn_3_92020 Lactuca sativa HOM05D002302 ORTHO05D002728 3.2e-09 67.8 50 68.0
arahy.Tifrunner.gnm1.ann1.SFPI36 Arachis hypogaea HOM05D003481 ORTHO05D004001 4.3e-06 57.4 79 49.4
Lsat_1_v5_gn_0_25080 Lactuca sativa HOM05D003481 ORTHO05D004001 9.7e-06 56.2 138 31.9


User provided reference genes

Program Settings