Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc608G30 Aethionema arabicum HOM05D006401 ORTHO05D007864 2.0e-33 145.2 75 100.0
Aa31LG8G10590 Aethionema arabicum HOM05D006401 ORTHO05D007864 1.2e-25 119.4 75 84.0
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 1.3e-24 115.9 75 82.7
BcaB04g18045 Brassica carinata HOM05D006401 ORTHO05D007864 3.8e-24 114.4 75 81.3
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 5.0e-24 114.0 75 81.3
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 5.0e-24 114.0 75 80.0
Sp7g07040 Schrenkiella parvula HOM05D006401 ORTHO05D007864 5.0e-24 114.0 75 81.3
Thhalv10003453m.g Eutrema salsugineum HOM05D006401 ORTHO05D007864 6.5e-24 113.6 75 81.3
BcaC07g37665 Brassica carinata HOM05D006401 ORTHO05D007864 1.9e-23 112.1 75 80.0
A08p09710 Brassica napus HOM05D006401 ORTHO05D007864 1.9e-23 112.1 75 80.0
BolC8t48034H Brassica oleracea HOM05D006401 ORTHO05D007864 1.9e-23 112.1 75 80.0
BraA08t32967Z Brassica rapa HOM05D006401 ORTHO05D007864 1.9e-23 112.1 75 80.0
CARHR217420 Cardamine hirsuta HOM05D006401 ORTHO05D007864 1.9e-23 112.1 75 80.0
THA.LOC104826573 Tarenaya hassleriana HOM05D006401 ORTHO05D007864 7.2e-23 110.2 73 79.5
Lj9A5T15 Lonicera japonica HOM05D006401 ORTHO05D007864 2.1e-22 108.6 75 74.7
Lju50A23T26 Lonicera japonica HOM05D006401 ORTHO05D007864 2.1e-22 108.6 75 74.7
Dinv12612 Davidia involucrata HOM05D006401 ORTHO05D007864 1.0e-21 106.3 73 78.1
Lalb_Chr05g0223791 Lupinus albus HOM05D006401 ORTHO05D007864 1.4e-21 105.9 74 75.7
Actinidia02474 Actinidia chinensis HOM05D006401 ORTHO05D007864 1.8e-21 105.5 75 73.3
Lsat_1_v5_gn_5_80461 Lactuca sativa HOM05D006401 ORTHO05D007864 2.3e-21 105.1 73 74.0
Phvul.002G302500 Phaseolus vulgaris HOM05D006401 ORTHO05D007864 3.0e-21 104.8 73 75.3
VMungo0251G1477 Vigna mungo HOM05D006401 ORTHO05D007864 3.0e-21 104.8 73 75.3
Duzib170G0999 Durio zibethinus HOM05D006401 ORTHO05D007864 3.9e-21 104.4 75 76.0
GSVIVG01013042001 Vitis vinifera HOM05D006401 ORTHO05D007864 5.2e-21 104.0 75 72.0
Hma1.2p1_0314F.1_g122060 Hydrangea macrophylla HOM05D006401 ORTHO05D007864 6.7e-21 103.6 75 74.7
QL11p008681 Quercus lobata HOM05D006401 ORTHO05D007864 6.7e-21 103.6 73 74.0
Glyma.08G027300 Glycine max HOM05D006401 ORTHO05D007864 8.8e-21 103.2 73 74.0
Thecc.09G196700 Theobroma cacao HOM05D006401 ORTHO05D007864 8.8e-21 103.2 75 74.7
CANSAT80G2545 Cannabis sativa HOM05D006401 ORTHO05D007864 1.1e-20 102.8 74 70.3
Lj4g0001613 Lotus japonicus HOM05D006401 ORTHO05D007864 1.1e-20 102.8 73 72.6
Rhsim03G0113000 Rhododendron simsii HOM05D006401 ORTHO05D007864 1.5e-20 102.4 75 69.3
COL.COLO4_23416 Corchorus olitorius HOM05D006401 ORTHO05D007864 2.0e-20 102.1 73 75.3
Ciclev10008288m.g Citrus clementina HOM05D006401 ORTHO05D007864 2.6e-20 101.7 73 72.6
Gorai.012G097600 Gossypium raimondii HOM05D006401 ORTHO05D007864 2.6e-20 101.7 73 74.0
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 2.6e-20 101.7 73 72.6
Potri.018G147400 Populus trichocarpa HOM05D006401 ORTHO05D007864 2.6e-20 101.7 73 71.2
Glyma.05G220800 Glycine max HOM05D006401 ORTHO05D007864 3.3e-20 101.3 73 72.6
Prupe.1G064000 Prunus persica HOM05D006401 ORTHO05D007864 3.3e-20 101.3 73 72.6
TAR626G0078 Trochodendron aralioides HOM05D006401 ORTHO05D007864 4.4e-20 100.9 73 71.2
CiPaw.16G104000 Carya illinoinensis HOM05D006401 ORTHO05D007864 5.7e-20 100.5 73 71.2
Gohir.A04G052200 Gossypium hirsutum HOM05D006401 ORTHO05D007864 7.4e-20 100.1 73 72.6
HanXRQChr10g0309551 Helianthus annuus HOM05D006401 ORTHO05D007864 7.4e-20 100.1 73 71.2
Cpa.g.sc115.22 Carica papaya HOM05D006401 ORTHO05D007864 9.7e-20 99.8 75 73.3
ECA236G1652 Erigeron canadensis HOM05D006401 ORTHO05D007864 1.3e-19 99.4 73 72.6
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 1.3e-19 99.4 73 71.2
Manes.02G221700 Manihot esculenta HOM05D006401 ORTHO05D007864 1.7e-19 99.0 73 69.9
arahy.Tifrunner.gnm1.ann1.IH6H8X Arachis hypogaea HOM05D006401 ORTHO05D007864 2.2e-19 98.6 67 77.6
arahy.Tifrunner.gnm1.ann1.Y2X24R Arachis hypogaea HOM05D006401 ORTHO05D007864 2.2e-19 98.6 67 77.6
PSO063G4133 Papaver somniferum HOM05D006401 ORTHO05D007864 2.2e-19 98.6 75 68.0
RcHm_v2.0_Chr4g0397611 Rosa chinensis HOM05D006401 ORTHO05D007864 2.2e-19 98.6 73 71.2
TPR.G25454 Trifolium pratense HOM05D006401 ORTHO05D007864 2.2e-19 98.6 67 76.1
Ca_17430_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 2.8e-19 98.2 73 69.9
Ca_17439_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 2.8e-19 98.2 73 69.9
MD13G1232500 Malus domestica HOM05D006401 ORTHO05D007864 2.8e-19 98.2 73 69.9
FAN22G1023 Fragaria x ananassa HOM05D006401 ORTHO05D007864 3.7e-19 97.8 73 69.9
Medtr8g101250 Medicago truncatula HOM05D006401 ORTHO05D007864 3.7e-19 97.8 73 69.9
FAN17G0150 Fragaria x ananassa HOM05D006401 ORTHO05D007864 4.8e-19 97.4 73 68.5
Cc00_g00110 Coffea canephora HOM05D006401 ORTHO05D007864 6.3e-19 97.1 75 65.3
FvH4_4g06050 Fragaria vesca HOM05D006401 ORTHO05D007864 6.3e-19 97.1 73 67.1
FAN12G0292 Fragaria x ananassa HOM05D006401 ORTHO05D007864 6.3e-19 97.1 73 67.1
PSO170G1271 Papaver somniferum HOM05D006401 ORTHO05D007864 6.3e-19 97.1 75 66.7
Sopen07g005990 Solanum pennellii HOM05D006401 ORTHO05D007864 1.1e-18 96.3 73 68.5
PGSC0003DMG402009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 1.1e-18 96.3 73 68.5
CsaV3_1G004580 Cucumis sativus L. HOM05D006401 ORTHO05D007864 1.4e-18 95.9 73 68.5
Migut.J00842 Erythranthe guttata HOM05D006401 ORTHO05D007864 1.4e-18 95.9 67 73.1
Aqoxy7G02629 Aquilegia oxysepala HOM05D006401 ORTHO05D007864 1.8e-18 95.5 73 68.5
AUR62020726 Chenopodium quinoa HOM05D006401 ORTHO05D007864 1.8e-18 95.5 73 67.1
Sabra18G0121600 Salix brachista HOM05D006401 ORTHO05D007864 1.8e-18 95.5 73 68.5
Sabra18G0128800 Salix brachista HOM05D006401 ORTHO05D007864 1.8e-18 95.5 73 68.5
Ah.11g043600 Amaranthus hybridus HOM05D006401 ORTHO05D007864 2.4e-18 95.1 75 65.3
Hund19359 Selenicereus undatus HOM05D006401 ORTHO05D007864 2.4e-18 95.1 73 67.1
PGR044G1973 Punica granatum HOM05D006401 ORTHO05D007864 3.1e-18 94.7 73 67.1
Sed0005150 Sechium edule HOM05D006401 ORTHO05D007864 3.1e-18 94.7 67 74.6
CDE05G1304 Ceratophyllum demersum HOM05D006401 ORTHO05D007864 4.1e-18 94.4 73 68.5
Nitab4.5_0000899g0070 Nicotiana tabacum HOM05D006401 ORTHO05D007864 4.1e-18 94.4 73 64.4
ATR0626G158 Amborella trichopoda HOM05D006401 ORTHO05D007864 5.3e-18 94.0 75 68.0
Sc23g0004370 Simmondsia chinensis HOM05D006401 ORTHO05D007864 7.0e-18 93.6 73 67.1
MSTRG.5961 Avicennia marina HOM05D006401 ORTHO05D007864 1.6e-17 92.4 73 65.8
EL10Ac2g03627 Beta vulgaris HOM05D006401 ORTHO05D007864 2.0e-17 92.0 75 65.3
Nitab4.5_0008632g0020 Nicotiana tabacum HOM05D006401 ORTHO05D007864 4.5e-17 90.9 73 63.0
FAN07G0669 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.3e-16 89.4 67 68.7
Zm00001eb274430 Zea mays HOM05D006401 ORTHO05D007864 1.7e-16 89.0 73 68.5
MBI13_g31574_MAGBIO Magnolia biondii HOM05D006401 ORTHO05D007864 2.2e-16 88.6 73 64.4
SEGI_34102 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 5.0e-16 87.4 75 64.0
SHI03133 Sapria himalayana HOM05D006401 ORTHO05D007864 2.5e-15 85.1 78 64.1
AUR62027987 Chenopodium quinoa HOM05D006401 ORTHO05D007864 1.6e-14 82.4 62 69.4
MELO3C017384.2 Cucumis melo HOM05D006401 ORTHO05D007864 2.7e-14 81.6 62 72.6
SalBow6G4903 Salvia bowleyana HOM05D006401 ORTHO05D007864 1.0e-13 79.7 63 65.1
CSS0033991 Camellia sinensis var. sinensis HOM05D006401 ORTHO05D007864 3.0e-13 78.2 63 63.5
SEGI_04184 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 6.8e-13 77.0 75 57.3
SEGI_02756 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 4.4e-12 74.3 61 65.6
SEGI_28851 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 4.4e-12 74.3 61 65.6
SMO232G0120 Selaginella moellendorffii HOM05D006401 ORTHO05D007864 1.8e-10 68.9 63 61.9
CDE05G1402 Ceratophyllum demersum HOM05D000163 ORTHO05D007864 2.7e-09 65.1 49 69.4
MCO14G313 Micromonas commoda HOM05D006401 ORTHO05D007864 4.5e-09 64.3 63 58.7
CBR_g44387 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-08 62.0 62 61.3
Oeu036951.3 Olea europaea HOM05D006401 ORTHO05D007864 1.5e-07 59.3 92 45.7
SEGI_09852 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 9.4e-07 56.6 48 64.6


User provided reference genes

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