Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 4.9e-293 1010.4 501 100.0
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 4.8e-232 807.7 491 83.5
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.9e-228 795.8 529 80.2
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.2e-225 786.6 491 81.7
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 2.6e-225 785.4 491 81.1
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 7.5e-225 783.9 491 80.9
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 2.2e-224 782.3 491 80.7
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 6.3e-224 780.8 491 80.2
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 6.3e-224 780.8 491 80.2
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 2.4e-223 778.9 491 80.9
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 3.1e-223 778.5 491 80.0
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 9.1e-223 776.9 491 80.9
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 5.9e-222 774.2 492 80.1
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 1.0e-221 773.5 492 80.3
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 2.3e-221 772.3 491 80.2
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 4.2e-220 768.1 491 79.4
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 1.2e-219 766.5 500 79.4
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 2.0e-217 759.2 518 76.3
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 4.4e-217 758.1 491 78.6
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 2.1e-211 739.2 501 74.9
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 1.3e-197 693.3 501 70.5
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 4.4e-193 678.3 499 68.7
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 1.7e-192 676.4 496 68.8
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 2.2e-192 676.0 501 68.3
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 2.2e-192 676.0 502 68.3
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 1.1e-191 673.7 501 66.9
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 2.4e-191 672.5 501 67.3
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 3.2e-191 672.2 504 67.1
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 7.1e-191 671.0 493 68.0
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 2.1e-190 669.5 501 66.3
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 2.1e-190 669.5 503 67.6
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 3.9e-189 665.2 501 65.9
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 5.1e-189 664.8 504 66.7
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 1.6e-187 659.8 498 66.5
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 6.2e-187 657.9 501 66.3
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 1.4e-186 656.8 506 65.2
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 6.8e-186 654.4 510 65.3
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 1.2e-185 653.7 501 65.5
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 1.2e-185 653.7 498 66.3
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 2.6e-185 652.5 497 66.4
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.6e-185 652.5 512 64.3
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 7.6e-185 651.0 502 65.7
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 2.9e-184 649.0 492 66.7
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 4.9e-184 648.3 496 65.9
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 6.4e-184 647.9 499 65.9
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 6.4e-184 647.9 499 65.7
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 6.4e-184 647.9 495 67.3
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 1.1e-183 647.1 505 65.7
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 2.4e-183 646.0 499 65.5
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 3.2e-183 645.6 496 65.7
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 7.1e-183 644.4 503 65.6
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 9.2e-183 644.0 495 66.7
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 1.6e-182 643.3 500 65.0
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 6.0e-182 641.3 502 65.7
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 1.0e-181 640.6 507 64.7
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 2.3e-181 639.4 382 84.0
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 3.0e-181 639.0 521 63.1
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 8.7e-181 637.5 382 83.8
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 8.7e-181 637.5 498 65.5
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 2.5e-180 636.0 493 65.7
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 3.3e-180 635.6 504 65.1
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 3.3e-180 635.6 508 65.0
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 5.6e-180 634.8 498 65.1
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 9.6e-180 634.0 517 64.0
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.8e-179 632.5 507 64.9
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 2.8e-179 632.5 498 64.7
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 3.6e-179 632.1 526 63.5
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 6.2e-179 631.3 503 64.6
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.8e-178 629.8 515 63.9
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 1.8e-178 629.8 507 65.1
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 3.1e-178 629.0 507 64.9
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 6.9e-178 627.9 501 64.7
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 2.0e-177 626.3 504 65.1
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 2.6e-177 625.9 496 63.7
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 3.4e-177 625.5 508 64.6
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 4.4e-177 625.2 509 64.4
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 2.9e-176 622.5 499 63.9
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 1.4e-175 620.2 520 62.1
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.9e-175 619.8 512 62.9
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.9e-175 619.8 512 62.9
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 2.4e-175 619.4 511 61.8
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 2.4e-175 619.4 522 62.3
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 2.1e-174 616.3 493 64.9
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 1.7e-173 613.2 557 59.1
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 3.0e-173 612.5 498 64.5
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 8.7e-173 610.9 484 65.9
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 1.1e-172 610.5 454 68.1
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 2.1e-171 606.3 526 61.0
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.1e-170 604.0 525 61.0
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 5.8e-169 598.2 454 67.6
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 7.6e-169 597.8 551 59.2
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 1.7e-168 596.7 511 61.3
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 3.2e-167 592.4 501 62.5
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.5e-166 589.0 513 60.6
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 6.7e-165 584.7 512 60.0
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 9.6e-164 580.9 507 60.9
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.4e-159 567.0 517 58.2
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 3.2e-159 565.8 509 58.3
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 5.5e-159 565.1 517 57.8
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 3.5e-158 562.4 499 57.9
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 4.6e-158 562.0 491 59.3
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 6.0e-158 561.6 505 60.4
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 1.0e-157 560.8 509 58.7
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 8.7e-157 557.8 606 53.0
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 7.4e-156 554.7 499 59.3
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 8.2e-155 551.2 393 68.4
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.4e-154 550.4 515 57.9
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 9.0e-154 547.7 523 55.1
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 9.0e-154 547.7 378 71.7
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 9.0e-154 547.7 518 56.6
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 1.1e-151 540.8 527 57.1
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 1.6e-150 537.0 505 59.0
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 3.0e-149 532.7 484 58.3
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 3.0e-149 532.7 520 54.8
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 3.9e-149 532.3 740 43.9
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 5.7e-148 528.5 516 54.3
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 1.1e-143 514.2 406 63.5
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 3.2e-143 512.7 515 54.2
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 3.2e-135 486.1 348 68.4
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.4e-130 469.9 512 50.2
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 4.1e-130 469.2 324 71.9
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.6e-116 423.3 504 49.8
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.2e-115 420.2 366 59.8
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 2.4e-106 390.2 557 42.7
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 7.0e-106 388.7 489 44.4
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 7.7e-105 385.2 364 56.6
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.8e-104 382.9 546 44.3
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 8.9e-101 371.7 500 44.8
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 1.2e-100 371.3 498 46.0
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 1.6e-94 350.9 529 41.8
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 1.4e-90 337.8 275 62.2
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.9e-90 337.4 474 42.6
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 3.2e-90 336.7 245 69.4
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 1.4e-77 294.7 485 43.1
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 1.2e-73 281.6 236 60.6
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 1.9e-71 274.2 185 75.7
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 1.3e-67 261.5 328 48.5
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 8.4e-67 258.8 268 56.7
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 1.7e-64 251.1 175 74.3
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 2.8e-62 243.8 431 36.7
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 3.3e-55 220.3 188 66.5
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 2.8e-54 217.2 227 47.6
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 1.5e-52 211.5 178 59.6
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 1.6e-49 201.4 299 44.1
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.2e-46 189.5 489 32.1
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.8e-43 180.3 272 40.4
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.5e-43 179.5 192 50.5
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.9e-42 177.9 126 73.0
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 6.0e-41 172.9 301 36.2
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 1.9e-39 167.9 139 66.9
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 2.1e-38 164.5 313 34.8
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 1.1e-37 162.2 466 28.3
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.5e-35 152.9 177 53.1
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 1.6e-30 138.3 146 57.5
BcaC09g51897 Brassica carinata HOM05D003985 ORTHO05D023785 1.2e-25 122.1 88 71.6
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 3.9e-24 117.1 97 61.9
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 4.5e-20 103.6 110 49.1
arahy.Tifrunner.gnm1.ann1.AXX9EX Arachis hypogaea HOM05D003985 ORTHO05D023785 7.7e-20 102.8 80 56.2
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 7.7e-20 102.8 65 70.8
BolC1t00770H Brassica oleracea HOM05D003985 ORTHO05D023785 2.9e-19 100.9 79 68.4
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 1.0e-16 92.4 142 38.0
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 1.4e-16 92.0 128 44.5
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 2.6e-15 87.8 126 42.1
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 4.8e-14 83.6 112 47.3
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 6.3e-14 83.2 50 76.0
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 5.3e-13 80.1 45 82.2
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.2e-12 79.0 50 74.0
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 8.5e-11 72.8 62 62.9
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 3.0e-08 64.3 92 41.3
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 8.8e-08 62.8 41 65.9


User provided reference genes

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