Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc52G270 Aethionema arabicum HOM05D008427 ORTHO05D010551 1.9e-110 402.5 199 100.0
CARHR206740 Cardamine hirsuta HOM05D008427 ORTHO05D010551 1.1e-78 297.0 199 72.9
Aa31sc52G280 Aethionema arabicum HOM05D008427 ORTHO05D010551 2.1e-77 292.7 205 71.2
Carub.0006s0533 Capsella rubella HOM05D008427 ORTHO05D010551 6.0e-77 291.2 206 70.9
AT5G06450 Arabidopsis thaliana HOM05D008427 ORTHO05D010551 2.5e-75 285.8 205 68.8
Sp6g36410 Schrenkiella parvula HOM05D008427 ORTHO05D010551 4.3e-75 285.0 204 70.6
AL6G16540 Arabidopsis lyrata HOM05D008427 ORTHO05D010551 7.4e-75 284.3 205 69.8
BolC3t12861H Brassica oleracea HOM05D008427 ORTHO05D010551 7.4e-75 284.3 200 70.5
A03p02740 Brassica napus HOM05D008427 ORTHO05D010551 1.8e-73 279.6 200 69.0
BraA03t09637Z Brassica rapa HOM05D008427 ORTHO05D010551 1.8e-73 279.6 200 69.0
C03p03160 Brassica napus HOM05D008427 ORTHO05D010551 1.2e-72 276.9 200 68.5
BcaC05g29332 Brassica carinata HOM05D008427 ORTHO05D010551 7.9e-69 264.2 201 64.2
BraA05t22555Z Brassica rapa HOM05D008427 ORTHO05D010551 3.0e-68 262.3 201 63.7
BcaB06g25585 Brassica carinata HOM05D008427 ORTHO05D010551 5.1e-68 261.5 203 62.1
A05p37570 Brassica napus HOM05D008427 ORTHO05D010551 6.7e-68 261.2 201 63.2
THA.LOC104816634 Tarenaya hassleriana HOM05D008427 ORTHO05D010551 1.1e-67 260.4 204 63.7
C05p56140 Brassica napus HOM05D008427 ORTHO05D010551 2.5e-67 259.2 201 63.2
BolC5t34280H Brassica oleracea HOM05D008427 ORTHO05D010551 2.5e-67 259.2 201 63.2
Thhalv10021553m.g Eutrema salsugineum HOM05D008427 ORTHO05D010551 3.3e-67 258.8 201 63.7
BcaB01g05993 Brassica carinata HOM05D008427 ORTHO05D010551 4.3e-67 258.5 198 65.7
CARHR086320 Cardamine hirsuta HOM05D008427 ORTHO05D010551 5.7e-67 258.1 201 62.7
Carub.0003s1111 Capsella rubella HOM05D008427 ORTHO05D010551 9.7e-67 257.3 202 62.9
AT3G11770 Arabidopsis thaliana HOM05D008427 ORTHO05D010551 1.6e-66 256.5 201 62.7
THA.LOC104826796 Tarenaya hassleriana HOM05D008427 ORTHO05D010551 1.6e-66 256.5 208 59.6
Sp3g10000 Schrenkiella parvula HOM05D008427 ORTHO05D010551 2.8e-66 255.8 201 62.2
AL3G23340 Arabidopsis lyrata HOM05D008427 ORTHO05D010551 3.7e-66 255.4 201 62.2
Aa31LG3G5270 Aethionema arabicum HOM05D008427 ORTHO05D010551 6.3e-66 254.6 201 62.7
BcaC09g48194 Brassica carinata HOM05D008427 ORTHO05D010551 9.1e-65 250.8 201 61.7
BolC1t05289H Brassica oleracea HOM05D008427 ORTHO05D010551 7.7e-64 247.7 201 60.7
BraA01t04160Z Brassica rapa HOM05D008427 ORTHO05D010551 1.0e-63 247.3 201 60.7
BcaB04g21117 Brassica carinata HOM05D008427 ORTHO05D010551 3.8e-63 245.4 202 61.4
THA.LOC104816632 Tarenaya hassleriana HOM05D008427 ORTHO05D010551 7.9e-53 211.1 203 57.6
THA.LOC104816633 Tarenaya hassleriana HOM05D008427 ORTHO05D010551 1.2e-48 197.2 203 51.7
BcaB07g32741 Brassica carinata HOM05D008427 ORTHO05D010551 4.4e-35 152.1 109 67.0
Thhalv10015043m.g Eutrema salsugineum HOM05D008427 ORTHO05D010551 2.2e-31 139.8 198 43.9
BcaB03g16229 Brassica carinata HOM05D008427 ORTHO05D010551 2.7e-24 116.3 87 64.4
Thecc.05G267200 Theobroma cacao HOM05D008427 ORTHO05D010551 2.9e-18 96.3 200 32.5
Thecc.05G267100 Theobroma cacao HOM05D008427 ORTHO05D010551 2.0e-16 90.1 196 30.6
Sabra19G0033300 Salix brachista HOM05D008427 ORTHO05D010551 2.7e-16 89.7 229 30.1
Potri.019G021900 Populus trichocarpa HOM05D008427 ORTHO05D010551 2.3e-15 86.7 229 29.7
SHI23918 Sapria himalayana HOM05D008427 ORTHO05D000525 1.2e-13 80.9 240 27.9
COL.COLO4_15529 Corchorus olitorius HOM05D008427 ORTHO05D010551 6.8e-12 75.1 205 28.3
TPR.G38682 Trifolium pratense HOM05D000886 ORTHO05D000525 1.2e-11 74.3 123 38.2
Prupe.4G202600 Prunus persica HOM05D008427 ORTHO05D010551 1.5e-11 73.9 192 29.7
FvH4_3g21850 Fragaria vesca HOM05D000886 ORTHO05D010551 2.6e-11 73.2 194 27.8
FAN11G0335 Fragaria x ananassa HOM05D000886 ORTHO05D010551 2.6e-11 73.2 194 27.8
RcHm_v2.0_Chr5g0037631 Rosa chinensis HOM05D008427 ORTHO05D010551 7.5e-11 71.6 193 29.5
Atru.chr2.1085 Acer truncatum HOM05D008427 ORTHO05D010551 3.7e-10 69.3 114 33.3
Atru.chr2.1095 Acer truncatum HOM05D008427 ORTHO05D010551 3.7e-10 69.3 161 26.1
Atru.chr2.1081 Acer truncatum HOM05D008427 ORTHO05D010551 4.9e-10 68.9 195 27.2
Atru.chr2.1074 Acer truncatum HOM05D008427 ORTHO05D010551 3.2e-09 66.2 147 29.3
FvH4_3g40510 Fragaria vesca HOM05D000886 ORTHO05D000525 5.4e-09 65.5 159 27.7
Potri.013G049000 Populus trichocarpa HOM05D000886 ORTHO05D010551 1.6e-08 63.9 156 30.8
FAN16G2738 Fragaria x ananassa HOM05D000886 ORTHO05D000525 2.0e-08 63.5 159 27.0
Gohir.A11G245100 Gossypium hirsutum HOM05D000886 ORTHO05D000525 2.0e-08 63.5 195 29.7
BcaB06g26930 Brassica carinata HOM05D008427 ORTHO05D010551 3.5e-08 62.8 45 68.9
Dinv09707 Davidia involucrata HOM05D000886 ORTHO05D000525 3.5e-08 62.8 163 28.2
FAN11G3456 Fragaria x ananassa HOM05D000886 ORTHO05D000525 3.5e-08 62.8 159 27.0
FAN25G0223 Fragaria x ananassa HOM05D000886 ORTHO05D000525 4.6e-08 62.4 159 26.4
Ca_10270_v3 Cicer arietinum L. HOM05D000886 ORTHO05D000525 6.0e-08 62.0 175 31.4
Sabra13G0045300 Salix brachista HOM05D000886 ORTHO05D000525 1.0e-07 61.2 142 33.8
Dinv03445 Davidia involucrata HOM05D000886 ORTHO05D000525 1.7e-07 60.5 150 30.7
Manes.08G161900 Manihot esculenta HOM05D000886 ORTHO05D000525 3.0e-07 59.7 126 32.5
Nitab4.5_0000699g0130 Nicotiana tabacum HOM05D000886 ORTHO05D000525 3.0e-07 59.7 182 26.9
TPR.G31753 Trifolium pratense HOM05D000886 ORTHO05D000525 5.0e-07 58.9 159 29.6
COL.COLO4_15532 Corchorus olitorius HOM05D001309 ORTHO05D000385 8.6e-07 58.2 184 27.7
Nitab4.5_0003544g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 8.6e-07 58.2 182 26.9
Lsat_1_v5_gn_9_55780 Lactuca sativa HOM05D000886 ORTHO05D000525 1.1e-06 57.8 110 34.5
Manes.08G161704 Manihot esculenta HOM05D000886 ORTHO05D000525 1.1e-06 57.8 154 29.2
Os01g0737600 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 1.5e-06 57.4 148 27.7
Sabra16G0032800 Salix brachista HOM05D018708 ORTHO05D030502 1.5e-06 57.4 91 37.4
Duzib128G1006 Durio zibethinus HOM05D000886 ORTHO05D000525 1.9e-06 57.0 109 33.0
Phvul.007G212800 Phaseolus vulgaris HOM05D000886 ORTHO05D000525 2.5e-06 56.6 193 28.5
RcHm_v2.0_Chr5g0073181 Rosa chinensis HOM05D000886 ORTHO05D000525 3.3e-06 56.2 149 28.9
Dinv17692 Davidia involucrata HOM05D000886 ORTHO05D000525 4.3e-06 55.8 165 27.3
Eucgr.G02149 Eucalyptus grandis HOM05D000886 ORTHO05D000525 4.3e-06 55.8 171 31.6
Atru.chr1.1145 Acer truncatum HOM05D000886 ORTHO05D000525 5.6e-06 55.5 158 27.2
Actinidia38124 Actinidia chinensis HOM05D000886 ORTHO05D000525 5.6e-06 55.5 143 26.6
Lsat_1_v5_gn_5_111280 Lactuca sativa HOM05D000886 ORTHO05D000525 5.6e-06 55.5 108 34.3
Lsat_1_v5_gn_5_111240 Lactuca sativa HOM05D000886 ORTHO05D000525 7.3e-06 55.1 109 33.0
Eucgr.D02522 Eucalyptus grandis HOM05D000886 ORTHO05D000525 9.5e-06 54.7 164 23.8
Potri.016G028700 Populus trichocarpa HOM05D000886 ORTHO05D000525 9.5e-06 54.7 163 25.8


User provided reference genes

Program Settings