Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 7.1e-159 563.9 291 100.0
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 9.6e-140 500.4 295 88.5
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 2.1e-139 499.2 292 88.7
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 3.1e-138 495.4 292 87.7
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 4.5e-137 491.5 295 86.1
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 6.4e-136 487.6 297 86.2
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 1.6e-134 483.0 293 86.3
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 1.6e-134 483.0 293 86.3
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 8.7e-133 477.2 295 84.4
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 1.4e-130 469.9 297 82.5
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 6.4e-128 461.1 291 81.4
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 3.2e-127 458.8 295 79.7
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 6.0e-126 454.5 293 81.9
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 7.9e-126 454.1 293 81.9
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 3.9e-125 451.8 297 78.1
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 3.9e-125 451.8 297 78.8
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.9e-125 451.8 296 79.4
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 8.7e-125 450.7 297 78.1
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 2.5e-124 449.1 297 78.8
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 5.6e-124 448.0 297 77.4
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 9.6e-124 447.2 298 76.8
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 9.6e-124 447.2 295 77.6
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 1.3e-123 446.8 298 78.9
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.6e-123 446.4 295 77.3
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 4.8e-123 444.9 295 77.6
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.4e-122 442.6 297 76.4
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 2.4e-122 442.6 297 75.1
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 5.3e-122 441.4 297 75.4
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 9.0e-122 440.7 295 76.3
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 9.0e-122 440.7 297 76.4
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 9.0e-122 440.7 297 76.8
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.0e-121 439.5 297 76.4
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.6e-121 439.1 297 76.1
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 4.5e-121 438.3 295 76.6
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 5.8e-121 438.0 297 74.4
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.0e-120 437.2 295 74.9
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.0e-120 437.2 295 74.9
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 2.2e-120 436.0 297 75.4
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.8e-120 435.3 297 75.8
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 3.8e-120 435.3 297 75.4
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 4.9e-120 434.9 295 76.3
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 4.9e-120 434.9 297 75.8
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 6.5e-120 434.5 295 75.3
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.4e-119 433.3 297 74.7
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.9e-119 433.0 297 75.1
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 2.5e-119 432.6 297 75.1
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 5.5e-119 431.4 296 76.4
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 5.5e-119 431.4 326 69.9
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 7.1e-119 431.0 291 76.6
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 1.2e-118 430.3 296 75.3
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.2e-118 430.3 296 76.7
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.6e-118 429.9 295 75.6
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.6e-118 429.9 311 72.0
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 2.1e-118 429.5 296 75.7
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 2.7e-118 429.1 285 77.9
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 3.5e-118 428.7 297 75.8
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 6.0e-118 427.9 295 74.9
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 7.9e-118 427.6 296 75.7
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 7.9e-118 427.6 297 73.7
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 7.9e-118 427.6 331 68.3
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.8e-117 426.4 294 75.5
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 2.3e-117 426.0 291 74.9
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 2.3e-117 426.0 297 74.1
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 6.7e-117 424.5 296 75.3
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 1.5e-116 423.3 295 74.9
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 2.5e-116 422.5 291 73.5
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 7.4e-116 421.0 295 74.2
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 9.7e-116 420.6 297 73.7
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.3e-115 420.2 296 74.0
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 2.2e-115 419.5 297 73.7
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.8e-115 419.1 297 73.7
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 3.7e-115 418.7 301 72.4
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 6.3e-115 417.9 295 72.9
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 8.2e-115 417.5 278 77.3
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 8.2e-115 417.5 326 69.6
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 8.2e-115 417.5 298 73.5
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.5e-113 413.3 297 73.1
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 4.5e-113 411.8 297 72.4
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 7.7e-113 411.0 297 71.4
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 1.0e-112 410.6 293 72.4
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 8.5e-112 407.5 297 71.7
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.1e-111 407.1 295 69.8
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 2.5e-111 406.0 291 70.4
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 2.5e-111 406.0 291 70.4
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 3.2e-111 405.6 330 67.0
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.2e-111 405.2 297 71.7
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 4.2e-111 405.2 296 71.3
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 3.6e-110 402.1 291 70.4
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 1.0e-109 400.6 297 70.4
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.0e-109 399.1 317 68.1
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 3.0e-109 399.1 315 68.3
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 2.0e-108 396.4 261 80.8
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 2.5e-108 396.0 296 70.3
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 5.7e-108 394.8 296 67.6
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 3.7e-107 392.1 295 67.8
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 4.8e-107 391.7 297 71.4
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 8.2e-107 391.0 299 70.6
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 4.1e-106 388.7 273 72.5
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 6.9e-106 387.9 297 70.4
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 9.1e-106 387.5 291 70.1
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.2e-105 387.1 293 69.3
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 2.6e-105 386.0 294 68.0
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 2.2e-104 382.9 298 65.8
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 1.4e-103 380.2 235 80.4
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 2.5e-103 379.4 289 68.5
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 2.1e-102 376.3 294 68.4
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 6.1e-102 374.8 299 66.2
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 3.9e-101 372.1 389 56.3
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 2.6e-100 369.4 297 68.7
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 6.3e-99 364.8 291 67.4
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 6.3e-99 364.8 296 63.2
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 9.1e-98 360.9 229 76.9
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 4.5e-97 358.6 291 62.9
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 5.0e-96 355.1 297 63.6
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.2e-94 350.5 296 61.8
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 4.4e-92 342.0 223 74.9
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 4.4e-92 342.0 292 62.0
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.1e-90 337.4 191 85.3
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.4e-90 337.0 229 72.9
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.9e-88 329.3 295 61.4
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 1.1e-87 327.4 243 69.1
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 4.0e-85 318.9 297 60.9
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.7e-83 313.5 302 58.9
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 7.0e-82 308.1 285 58.9
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 2.0e-81 306.6 297 59.3
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.0e-80 304.3 291 55.7
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 3.2e-79 299.3 213 74.2
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 8.8e-77 291.2 295 51.5
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.0e-73 280.0 191 70.2
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.3e-72 277.3 295 50.8
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.9e-71 273.5 209 65.6
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 2.3e-69 266.5 293 51.5
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 8.9e-69 264.6 188 69.7
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 1.0e-61 241.1 294 52.4
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 1.0e-61 241.1 294 52.4
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 1.0e-61 241.1 294 52.4
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.4e-60 235.7 289 49.8
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.3e-51 207.6 262 48.5
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 5.6e-47 192.2 105 89.5
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 2.6e-44 183.3 108 82.4
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.0e-40 169.9 154 60.4
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 8.6e-40 168.3 154 59.7
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 8.6e-40 168.3 154 59.7
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.5e-39 167.5 227 45.4
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 2.5e-39 166.8 150 58.7
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 1.1e-34 151.4 85 87.1
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 2.4e-34 150.2 194 42.3
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 5.6e-31 139.0 73 93.2
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 5.6e-31 139.0 73 93.2
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 2.1e-30 137.1 72 93.1
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 1.5e-23 114.4 187 43.9
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.5e-23 114.4 68 82.4
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 2.1e-22 110.5 118 53.4
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.1e-21 108.2 109 54.1
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 1.5e-20 104.4 128 45.3
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.3e-19 101.3 110 51.8
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 4.9e-19 99.4 60 75.0
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 5.6e-15 85.9 59 67.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.1e-14 84.0 231 32.5
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.5e-12 77.8 86 52.3
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.2e-11 73.9 58 65.5


User provided reference genes

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