Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.7e-146 521.9 260 100.0
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.3e-87 327.0 258 65.9
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 2.9e-79 299.3 260 62.3
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 2.7e-77 292.7 250 63.2
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 2.0e-72 276.6 249 61.0
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 5.0e-71 271.9 248 60.9
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 1.5e-67 260.4 257 57.6
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 8.2e-66 254.6 259 56.4
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 8.2e-66 254.6 259 56.4
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 5.9e-64 248.4 260 55.4
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 6.3e-58 228.4 191 61.3
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.8e-57 226.9 263 52.5
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 5.9e-56 221.9 262 54.2
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 6.5e-55 218.4 176 65.9
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 6.5e-55 218.4 176 65.9
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 6.5e-55 218.4 176 65.9
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 1.1e-54 217.6 203 60.6
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 1.4e-54 217.2 197 59.4
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 7.2e-54 214.9 196 58.7
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 7.2e-54 214.9 188 60.1
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 9.4e-54 214.5 196 57.7
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 1.6e-53 213.8 204 58.3
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 1.6e-53 213.8 226 54.9
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 4.7e-53 212.2 197 58.4
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 1.8e-52 210.3 233 53.2
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 3.0e-52 209.5 196 58.7
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 6.3e-50 201.8 199 55.8
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 6.5e-47 191.8 199 53.8
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.2e-45 187.6 195 52.8
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 2.6e-43 179.9 190 52.6
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 2.2e-42 176.8 193 49.7
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 4.8e-42 175.6 193 49.7
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 4.8e-42 175.6 193 49.7
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 4.1e-41 172.6 193 48.7
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 9.1e-41 171.4 235 43.8
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 1.5e-38 164.1 191 47.6
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 9.4e-38 161.4 196 47.4
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 2.7e-37 159.8 243 40.7
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 4.7e-37 159.1 240 41.7
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.4e-36 157.5 249 40.2
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 5.2e-36 155.6 246 40.2
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 8.8e-36 154.8 201 43.3
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.0e-35 153.7 246 39.8
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.6e-35 153.3 246 39.8
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 3.4e-35 152.9 248 37.9
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 7.5e-35 151.8 267 36.7
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 9.8e-35 151.4 246 40.2
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 2.2e-34 150.2 251 38.2
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.8e-34 149.1 250 39.2
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 8.3e-34 148.3 247 38.9
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 3.1e-33 146.4 292 36.3
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 5.4e-33 145.6 235 38.7
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 5.9e-32 142.1 181 43.1
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 7.7e-32 141.7 194 42.3
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.3e-31 141.0 247 37.7
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 2.3e-31 140.2 234 37.2
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.9e-31 139.8 234 37.2
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 3.8e-31 139.4 252 38.9
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 5.0e-31 139.0 156 46.8
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 6.5e-31 138.7 235 39.6
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 6.5e-31 138.7 175 42.3
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.1e-30 137.9 234 37.2
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.5e-30 137.5 234 37.6
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 9.5e-30 134.8 263 36.1
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 9.5e-30 134.8 251 37.8
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 1.0e-28 131.3 170 46.5
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 1.4e-28 131.0 248 38.3
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 5.2e-28 129.0 238 39.1
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 6.8e-28 128.6 215 40.0
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 4.4e-27 125.9 264 36.7
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 7.5e-27 125.2 173 43.9
Haze_12048 Corylus avellana HOM05D004190 ORTHO05D004692 1.3e-26 124.4 321 32.4
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 4.9e-26 122.5 288 33.3
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 1.8e-25 120.6 242 33.5
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 9.2e-25 118.2 228 37.3
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 5.9e-24 115.5 294 32.0
A02p07130 Brassica napus HOM05D004190 ORTHO05D004692 1.0e-23 114.8 129 53.5
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 1.3e-23 114.4 330 27.9
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 6.6e-23 112.1 235 36.2
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 1.9e-22 110.5 166 38.6
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 2.5e-22 110.2 247 32.8
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.5e-22 110.2 153 40.5
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 2.5e-22 110.2 161 41.6
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 4.3e-22 109.4 239 33.9
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 1.2e-21 107.8 174 39.7
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 1.6e-21 107.5 159 39.6
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 6.1e-21 105.5 245 33.5
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.4e-20 104.4 151 39.7
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 2.3e-20 103.6 253 32.8
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 2.3e-20 103.6 239 33.9
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 4.0e-20 102.8 256 32.8
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 1.2e-19 101.3 146 42.5
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 2.0e-19 100.5 176 36.9
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 4.4e-19 99.4 240 33.3
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 7.5e-19 98.6 236 31.4
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 9.8e-19 98.2 234 32.1
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 1.7e-18 97.4 181 35.4
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 2.9e-18 96.7 167 39.5
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 3.7e-18 96.3 236 31.4
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 3.7e-18 96.3 237 31.2
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 3.7e-18 96.3 237 30.8
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 6.4e-18 95.5 231 33.3
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.4e-17 94.4 233 30.5
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 4.6e-16 89.4 264 29.2
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 6.0e-16 89.0 245 31.8
Aa31LG8G9210 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.3e-15 87.8 181 34.3
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 3.0e-15 86.7 107 43.0
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 3.9e-15 86.3 161 36.6
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 3.9e-15 86.3 108 42.6
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 3.9e-15 86.3 108 42.6
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 3.9e-15 86.3 147 40.8
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 5.0e-15 85.9 145 37.2
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 6.6e-15 85.5 241 29.5
Oeu002348.1 Olea europaea HOM05D004190 ORTHO05D004692 6.6e-15 85.5 162 35.2
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 8.6e-15 85.1 156 34.0
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 1.5e-14 84.3 245 29.4
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 7.3e-14 82.0 235 32.3
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 9.5e-14 81.6 229 31.0
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 1.2e-13 81.3 156 31.4
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 1.2e-13 81.3 210 31.4
BolC3t13826H Brassica oleracea HOM05D000021 ORTHO05D000010 2.1e-13 80.5 62 59.7
C03p13770 Brassica napus HOM05D000021 ORTHO05D000010 3.6e-13 79.7 62 59.7
AUR62009570 Chenopodium quinoa HOM05D004190 ORTHO05D004692 4.7e-13 79.3 241 29.0
A01p26200 Brassica napus HOM05D004190 ORTHO05D004692 8.0e-13 78.6 58 62.1
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 1.1e-12 78.2 189 29.6
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 1.2e-11 74.7 252 28.2
CARHR264240 Cardamine hirsuta HOM05D004190 ORTHO05D004692 2.0e-11 73.9 56 64.3
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 2.6e-11 73.6 207 30.9
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.6e-11 73.6 94 43.6
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 4.4e-11 72.8 180 29.4
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 7.5e-11 72.0 204 29.4
Gohir.D07G103000 Gossypium hirsutum HOM05D004190 ORTHO05D004692 7.5e-11 72.0 94 42.6
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 1.7e-10 70.9 204 30.9
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 2.4e-09 67.0 111 33.3
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 2.4e-09 67.0 144 36.1
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 9.2e-09 65.1 120 30.0
SEGI_38205 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 9.2e-09 65.1 144 30.6
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.2e-08 64.7 155 32.9
SEGI_27595 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 3.5e-08 63.2 144 29.9
SEGI_27640 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 7.8e-08 62.0 155 29.0
CARHR264250 Cardamine hirsuta HOM05D004190 ORTHO05D004692 1.0e-07 61.6 52 59.6
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.0e-07 61.6 145 33.8
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 1.3e-07 61.2 167 26.9
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 1.3e-07 61.2 179 31.8
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.3e-07 61.2 140 32.1
FvH4_6g13651 Fragaria vesca HOM05D022761 ORTHO05D022494 1.7e-07 60.8 168 26.2
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 3.0e-07 60.1 168 26.2
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 3.0e-07 60.1 168 26.2
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 3.0e-07 60.1 157 28.7
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 3.9e-07 59.7 133 31.6
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 8.6e-07 58.5 182 28.6
CAN.G745.25 Capsicum annuum HOM05D004190 ORTHO05D004692 1.9e-06 57.4 101 35.6
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 1.9e-06 57.4 179 30.7
Aqoxy4G00226 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 2.5e-06 57.0 159 30.2
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.5e-06 57.0 151 29.8
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.5e-06 57.0 174 28.7
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 3.3e-06 56.6 95 41.1
PGSC0003DMG400044882 Solanum tuberosum HOM05D004190 ORTHO05D004692 4.3e-06 56.2 50 42.0
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 5.6e-06 55.8 181 29.8
Sopen00g012630 Solanum pennellii HOM05D004190 ORTHO05D004692 9.5e-06 55.1 67 41.8
Sopen01g043570 Solanum pennellii HOM05D004190 ORTHO05D004692 9.5e-06 55.1 67 41.8


User provided reference genes

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