Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 3.5e-58 228.0 112 100.0
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 3.5e-58 228.0 112 100.0
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 6.5e-44 180.6 146 67.1
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.6e-18 96.3 54 87.0
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 3.8e-12 75.1 43 81.4
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.5e-11 73.2 46 80.4
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 1.5e-11 73.2 53 66.0
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 1.5e-11 73.2 43 79.1
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.9e-11 72.8 43 79.1
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 1.9e-11 72.8 43 79.1
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 2.5e-11 72.4 54 63.0
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 7.2e-11 70.9 56 57.1
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 1.6e-10 69.7 53 64.2
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.7e-10 68.9 47 76.6
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 8.0e-10 67.4 40 80.0
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 3.0e-09 65.5 53 60.4
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 2.0e-08 62.8 43 67.4
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 2.0e-08 62.8 43 67.4
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 2.0e-08 62.8 43 67.4
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 2.0e-08 62.8 51 51.0
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 2.0e-08 62.8 45 53.3
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 5.7e-08 61.2 43 67.4
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 5.7e-08 61.2 50 54.0
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 7.5e-08 60.8 50 50.0
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 7.5e-08 60.8 54 50.0
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 9.8e-08 60.5 53 45.3
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 1.3e-07 60.1 50 50.0
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 1.3e-07 60.1 43 55.8
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 1.3e-07 60.1 47 53.2
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 1.3e-07 60.1 52 53.8
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 1.7e-07 59.7 45 51.1
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 1.7e-07 59.7 45 51.1
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 1.7e-07 59.7 55 52.7
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 2.2e-07 59.3 41 61.0
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 2.8e-07 58.9 44 52.3
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 3.7e-07 58.5 43 55.8
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 3.7e-07 58.5 50 46.0
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 3.7e-07 58.5 52 51.9
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 3.7e-07 58.5 46 52.2
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 4.8e-07 58.2 49 44.9
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 4.8e-07 58.2 40 60.0
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 4.8e-07 58.2 54 51.9
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 6.3e-07 57.8 42 57.1
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 6.3e-07 57.8 42 54.8
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 8.3e-07 57.4 41 58.5
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 8.3e-07 57.4 43 55.8
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 1.1e-06 57.0 48 54.2
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 1.1e-06 57.0 39 61.5
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 1.4e-06 56.6 51 43.1
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 1.4e-06 56.6 50 44.0
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 1.8e-06 56.2 41 61.0
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.8e-06 56.2 80 40.0
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.8e-06 56.2 80 40.0
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 1.8e-06 56.2 52 42.3
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 2.4e-06 55.8 50 44.0
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 2.4e-06 55.8 50 46.0
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 2.4e-06 55.8 41 51.2
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 2.4e-06 55.8 41 53.7
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 3.1e-06 55.5 42 54.8
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 3.1e-06 55.5 43 55.8
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 3.1e-06 55.5 43 55.8
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.1e-06 55.5 55 45.5
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 3.1e-06 55.5 41 56.1
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 4.1e-06 55.1 38 60.5
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 4.1e-06 55.1 46 47.8
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 4.1e-06 55.1 50 44.0
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 5.4e-06 54.7 42 50.0
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 7.0e-06 54.3 49 40.8
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 7.0e-06 54.3 40 55.0
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 7.0e-06 54.3 50 46.0
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 7.0e-06 54.3 51 41.2
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 9.1e-06 53.9 50 42.0
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 9.1e-06 53.9 53 45.3
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 9.1e-06 53.9 54 46.3
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 9.1e-06 53.9 49 44.9
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 9.1e-06 53.9 46 47.8


User provided reference genes

Program Settings