Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 0.0e+00 1475.7 734 100.0
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 0.0e+00 1234.9 734 82.4
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 0.0e+00 1228.0 734 82.7
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 0.0e+00 1224.5 735 82.3
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 0.0e+00 1217.6 734 81.7
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 0.0e+00 1216.4 735 81.2
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 0.0e+00 1209.9 736 81.1
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 0.0e+00 1209.1 735 81.2
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1201.0 736 80.7
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1200.3 736 80.8
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 0.0e+00 1198.3 736 80.6
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 0.0e+00 1197.6 736 80.2
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 0.0e+00 1136.3 737 75.6
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 3.3e-298 1028.1 732 67.6
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 9.7e-298 1026.5 732 67.3
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 1.7e-294 1015.8 734 66.9
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 2.9e-294 1015.0 736 67.3
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 4.7e-292 1007.7 733 67.0
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 4.4e-290 1001.1 717 67.2
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 7.4e-290 1000.3 737 66.1
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 8.2e-289 996.9 720 67.6
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 1.1e-288 996.5 733 66.4
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 4.1e-288 994.6 733 66.3
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 2.9e-286 988.4 737 65.3
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 5.0e-286 987.6 732 66.3
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 1.6e-284 982.6 733 65.3
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 3.0e-283 978.4 735 65.2
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 3.0e-283 978.4 737 64.7
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 4.0e-283 978.0 733 64.5
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 1.2e-282 976.5 739 65.2
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 3.7e-281 971.5 733 65.5
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 4.8e-281 971.1 732 64.2
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 6.3e-281 970.7 732 64.2
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 1.8e-280 969.1 738 64.4
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 7.7e-279 963.8 733 65.1
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 4.7e-276 954.5 738 65.2
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 8.3e-273 943.7 743 62.2
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 1.6e-271 939.5 721 64.2
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 7.7e-271 937.2 734 62.8
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 1.1e-269 933.3 720 63.2
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 2.5e-269 932.2 719 63.1
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 1.6e-268 929.5 737 62.4
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 2.1e-268 929.1 723 64.5
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 2.1e-268 929.1 737 62.1
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 3.6e-268 928.3 741 62.2
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 6.1e-268 927.5 723 64.5
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 6.1e-268 927.5 729 63.0
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 4.0e-267 924.9 740 61.8
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 5.2e-267 924.5 736 62.1
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 6.8e-267 924.1 720 62.6
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 3.4e-266 921.8 738 62.1
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 3.4e-266 921.8 732 61.7
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 4.4e-266 921.4 739 61.7
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 7.5e-266 920.6 740 61.9
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 4.9e-265 917.9 732 62.0
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 2.4e-264 915.6 713 62.4
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 1.6e-263 912.9 735 62.0
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 5.9e-263 911.0 717 61.9
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 5.9e-263 911.0 732 61.3
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 1.7e-262 909.4 737 62.0
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 1.2e-260 903.3 735 61.2
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 2.8e-260 902.1 725 62.5
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 6.8e-259 897.5 734 61.9
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 1.2e-258 896.7 645 67.3
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 1.7e-257 892.9 732 60.8
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 2.9e-257 892.1 749 59.4
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 4.1e-256 888.3 743 61.1
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 7.8e-255 884.0 734 60.5
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 1.7e-254 882.9 676 63.5
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 7.3e-253 877.5 719 61.8
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 1.2e-252 876.7 711 60.8
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 1.4e-251 873.2 727 59.0
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 1.7e-249 866.3 664 64.0
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 4.1e-248 861.7 739 58.6
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 1.2e-247 860.1 744 58.6
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 7.8e-247 857.4 734 58.6
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 3.9e-246 855.1 721 59.2
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.0e-242 842.8 670 62.8
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 2.0e-242 842.8 642 64.8
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 1.7e-241 839.7 638 64.3
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 2.2e-241 839.3 735 57.7
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 9.2e-240 833.9 1000 47.1
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 1.6e-239 833.2 751 55.3
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 3.0e-238 828.9 656 61.4
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 1.9e-237 826.2 728 57.4
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 1.9e-237 826.2 723 57.0
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.2e-236 823.5 602 66.1
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 8.9e-235 817.4 719 58.4
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 2.7e-231 805.8 748 54.5
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 7.8e-231 804.3 554 69.3
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 5.4e-224 781.6 718 56.3
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 9.3e-224 780.8 601 63.1
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 3.4e-218 762.3 878 46.9
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 7.6e-218 761.1 581 63.2
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 1.1e-205 720.7 994 44.3
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 2.9e-201 706.1 734 52.9
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 1.3e-177 627.5 466 65.2
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 1.3e-172 610.9 381 77.4
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 2.5e-168 596.7 485 61.4
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 4.8e-164 582.4 743 43.3
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 2.5e-152 543.5 714 43.0
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 3.0e-137 493.4 651 41.6
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 3.9e-137 493.0 375 62.7
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.5e-128 464.5 438 52.7
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 6.2e-95 352.8 281 59.1
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 4.8e-87 326.6 267 62.9
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 1.2e-85 322.0 238 67.2
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 3.9e-81 307.0 262 59.2
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 5.9e-77 293.1 303 52.8
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 1.4e-62 245.4 292 48.3
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 2.6e-61 241.1 148 72.3
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.0e-57 227.3 166 68.7
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 5.0e-44 183.7 285 39.6
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 7.0e-38 163.3 286 37.4
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.3e-36 158.3 209 42.6
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 1.4e-33 149.1 167 49.1
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-32 144.4 169 42.6
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 4.6e-29 134.0 109 67.0
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.7e-28 132.1 132 54.5
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 8.6e-28 129.8 89 69.7
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 3.3e-27 127.9 155 45.8
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 7.3e-27 126.7 85 71.8
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 7.3e-27 126.7 85 71.8
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.6e-26 125.6 112 53.6
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 4.7e-26 124.0 109 64.2
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 1.4e-25 122.5 109 63.3
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 9.8e-24 116.3 107 54.2
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.7e-23 114.4 98 54.1
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 4.6e-21 107.5 74 71.6
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 5.0e-20 104.0 71 66.2
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 2.1e-18 98.6 57 84.2
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 2.1e-18 98.6 57 84.2
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 3.6e-18 97.8 57 84.2
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 6.2e-18 97.1 89 59.6
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 1.4e-17 95.9 107 47.7
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 1.2e-16 92.8 70 61.4
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 2.0e-16 92.0 75 61.3
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 2.6e-16 91.7 77 58.4
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 5.4e-14 84.0 51 72.5
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 2.1e-13 82.0 63 58.7
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 6.0e-13 80.5 64 62.5
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 1.0e-12 79.7 55 74.5
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 1.3e-12 79.3 643 21.0
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.3e-12 79.3 79 49.4
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 6.6e-12 77.0 53 64.2
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 1.5e-11 75.9 77 50.6
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 2.5e-11 75.1 53 71.7
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 7.3e-11 73.6 74 48.6
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 9.5e-11 73.2 267 27.0
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 1.6e-10 72.4 129 36.4
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 2.1e-10 72.0 168 28.0
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 6.2e-10 70.5 356 22.2
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 8.1e-10 70.1 51 70.6
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 1.4e-09 69.3 48 66.7
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 2.0e-08 65.5 74 51.4
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.3e-07 62.8 55 52.7
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 1.7e-07 62.4 51 60.8
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 4.9e-07 60.8 47 68.1


User provided reference genes

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