Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc124G50 Aethionema arabicum HOM05D002669 ORTHO05D059280 2.0e-32 141.7 67 100.0
CARHR102420 Cardamine hirsuta HOM05D002669 ORTHO05D003001 9.6e-11 69.7 38 81.6
A03p44370 Brassica napus HOM05D002669 ORTHO05D003001 4.8e-10 67.4 38 78.9
BraA03t13567Z Brassica rapa HOM05D002669 ORTHO05D003001 4.8e-10 67.4 38 78.9
AL3G42170 Arabidopsis lyrata HOM05D002669 ORTHO05D003001 6.2e-10 67.0 38 78.9
AT2G04530 Arabidopsis thaliana HOM05D002669 ORTHO05D003001 6.2e-10 67.0 38 78.9
Carub.0003s2616 Capsella rubella HOM05D002669 ORTHO05D003001 6.2e-10 67.0 38 78.9
Thhalv10002590m.g Eutrema salsugineum HOM05D002669 ORTHO05D003001 6.2e-10 67.0 38 78.9
Sp3g23310 Schrenkiella parvula HOM05D002669 ORTHO05D003001 6.2e-10 67.0 38 78.9
Aa31sc124G20 Aethionema arabicum HOM05D002669 ORTHO05D003001 8.2e-10 66.6 38 81.6
BcaB08g34479 Brassica carinata HOM05D002669 ORTHO05D003001 8.2e-10 66.6 38 78.9
BcaC01g03197 Brassica carinata HOM05D002669 ORTHO05D003001 8.2e-10 66.6 38 78.9
C03p54980 Brassica napus HOM05D002669 ORTHO05D003001 8.2e-10 66.6 38 78.9
BolC3t17773H Brassica oleracea HOM05D002669 ORTHO05D003001 8.2e-10 66.6 38 78.9
CDE04G1523 Ceratophyllum demersum HOM05D002669 ORTHO05D003001 1.2e-08 62.8 54 57.4
Peaxi162Scf00004g00117 Petunia axillaris HOM05D002669 ORTHO05D003001 1.5e-08 62.4 38 76.3
Cpa.g.sc132.51 Carica papaya HOM05D002669 ORTHO05D003001 3.4e-08 61.2 36 75.0
COL.COLO4_05387 Corchorus olitorius HOM05D002669 ORTHO05D003001 3.4e-08 61.2 38 73.7
Gohir.D07G090800 Gossypium hirsutum HOM05D002669 ORTHO05D003001 3.4e-08 61.2 38 73.7
Gorai.001G097300 Gossypium raimondii HOM05D002669 ORTHO05D003001 3.4e-08 61.2 38 73.7
CAN.G1550.11 Capsicum annuum HOM05D002669 ORTHO05D003001 5.8e-08 60.5 38 71.1
Duzib133G1044 Durio zibethinus HOM05D002669 ORTHO05D003001 5.8e-08 60.5 38 73.7
Duzib138G0682 Durio zibethinus HOM05D002669 ORTHO05D003001 5.8e-08 60.5 38 73.7
Nitab4.5_0001027g0070 Nicotiana tabacum HOM05D002669 ORTHO05D003001 5.8e-08 60.5 38 71.1
Solyc05g055350.3 Solanum lycopersicum HOM05D002669 ORTHO05D003001 5.8e-08 60.5 38 71.1
PGSC0003DMG400023384 Solanum tuberosum HOM05D002669 ORTHO05D003001 5.8e-08 60.5 38 71.1
Gohir.A07G085400 Gossypium hirsutum HOM05D002669 ORTHO05D003001 7.6e-08 60.1 38 71.1
MBI16_g42267_MAGBIO Magnolia biondii HOM05D002669 ORTHO05D003001 7.6e-08 60.1 54 55.6
Nitab4.5_0002662g0090 Nicotiana tabacum HOM05D002669 ORTHO05D003001 7.6e-08 60.1 38 68.4
Actinidia10791 Actinidia chinensis HOM05D002669 ORTHO05D003001 1.0e-07 59.7 56 55.4
Cfa014295 Carpinus fangiana HOM05D002669 ORTHO05D003001 1.0e-07 59.7 38 73.7
CiPaw.03G274300 Carya illinoinensis HOM05D002669 ORTHO05D003001 1.0e-07 59.7 38 71.1
Glyma.02G266200 Glycine max HOM05D002669 ORTHO05D003001 1.0e-07 59.7 38 71.1
Glyma.14G051300 Glycine max HOM05D002669 ORTHO05D003001 1.0e-07 59.7 38 71.1
Phvul.008G215900 Phaseolus vulgaris HOM05D002669 ORTHO05D003001 1.0e-07 59.7 38 71.1
QL08p029694 Quercus lobata HOM05D002669 ORTHO05D003001 1.0e-07 59.7 38 71.1
Thecc.01G187500 Theobroma cacao HOM05D002669 ORTHO05D003001 1.0e-07 59.7 38 71.1
TWI36G0008 Tripterygium wilfordii HOM05D002669 ORTHO05D003001 1.0e-07 59.7 38 68.4
Eucgr.K00726 Eucalyptus grandis HOM05D002669 ORTHO05D003001 1.3e-07 59.3 38 71.1
PGR142G2998 Punica granatum HOM05D002669 ORTHO05D003001 1.3e-07 59.3 38 71.1
Rhsim04G0046500 Rhododendron simsii HOM05D002669 ORTHO05D003001 1.3e-07 59.3 38 71.1
VMungo0647G2289 Vigna mungo HOM05D002669 ORTHO05D003001 1.3e-07 59.3 38 68.4
Ciclev10015749m.g Citrus clementina HOM05D002669 ORTHO05D003001 1.7e-07 58.9 36 69.4
FvH4_6g41771 Fragaria vesca HOM05D002669 ORTHO05D003001 1.7e-07 58.9 36 72.2
FAN02G3344 Fragaria x ananassa HOM05D002669 ORTHO05D003001 1.7e-07 58.9 36 72.2
FAN05G2633 Fragaria x ananassa HOM05D002669 ORTHO05D003001 1.7e-07 58.9 36 72.2
FAN09G1069 Fragaria x ananassa HOM05D002669 ORTHO05D003001 1.7e-07 58.9 36 72.2
FAN14G3592 Fragaria x ananassa HOM05D003198 ORTHO05D003716 1.7e-07 58.9 36 72.2
RcHm_v2.0_Chr2g0157561 Rosa chinensis HOM05D002669 ORTHO05D003001 1.7e-07 58.9 36 72.2
GSVIVG01030538001 Vitis vinifera HOM05D002669 ORTHO05D003001 1.7e-07 58.9 54 51.9
MD09G1117300 Malus domestica HOM05D002669 ORTHO05D003001 2.2e-07 58.5 36 72.2
Os09g0482680 Oryza sativa ssp. japonica HOM05D002669 ORTHO05D003001 2.2e-07 58.5 54 57.4
Sopen05g033800 Solanum pennellii HOM05D002669 ORTHO05D003001 2.2e-07 58.5 38 68.4
CSS0006302 Camellia sinensis var. sinensis HOM05D002669 ORTHO05D003001 2.9e-07 58.2 38 65.8
CSS0020098 Camellia sinensis var. sinensis HOM05D002669 ORTHO05D003001 2.9e-07 58.2 38 65.8
Sabra14G0122300 Salix brachista HOM05D002669 ORTHO05D003001 2.9e-07 58.2 56 53.6
Sed0005623 Sechium edule HOM05D002669 ORTHO05D003001 2.9e-07 58.2 38 71.1
Atru.chr6.3281 Acer truncatum HOM05D002669 ORTHO05D003001 3.8e-07 57.8 36 69.4
Atru.chr6.3298 Acer truncatum HOM05D002669 ORTHO05D003001 3.8e-07 57.8 36 69.4
MSTRG.13671 Avicennia marina HOM05D002669 ORTHO05D003001 3.8e-07 57.8 56 53.6
CsaV3_6G037860 Cucumis sativus L. HOM05D002669 ORTHO05D003001 3.8e-07 57.8 38 68.4
Dinv05856 Davidia involucrata HOM05D002669 ORTHO05D003001 3.8e-07 57.8 54 53.7
SalBow2G1006 Salvia bowleyana HOM05D002669 ORTHO05D003001 3.8e-07 57.8 36 69.4
Aqoxy1G04107 Aquilegia oxysepala HOM05D002669 ORTHO05D003001 4.9e-07 57.4 38 60.5
arahy.Tifrunner.gnm1.ann1.J49D5C Arachis hypogaea HOM05D002669 ORTHO05D003001 4.9e-07 57.4 38 71.1
arahy.Tifrunner.gnm1.ann1.S96PJU Arachis hypogaea HOM05D002669 ORTHO05D003001 4.9e-07 57.4 38 71.1
LjContig00029g0025311 Lotus japonicus HOM05D002669 ORTHO05D003001 4.9e-07 57.4 38 71.1
Potri.014G160600 Populus trichocarpa HOM05D002669 ORTHO05D003001 4.9e-07 57.4 56 53.6
SGA_v2.0_scaffold65G22205 Striga asiatica HOM05D002669 ORTHO05D003001 4.9e-07 57.4 56 55.4
HanXRQChr16g0508311 Helianthus annuus HOM05D002669 ORTHO05D003001 6.5e-07 57.0 36 66.7
Prupe.3G206500 Prunus persica HOM05D002669 ORTHO05D003001 6.5e-07 57.0 36 69.4
Ca_06045_v3 Cicer arietinum L. HOM05D002669 ORTHO05D003001 8.4e-07 56.6 38 65.8
Haze_12743 Corylus avellana HOM05D002669 ORTHO05D003001 8.4e-07 56.6 38 68.4
vmacro09374 Vaccinium macrocarpon HOM05D002669 ORTHO05D003001 8.4e-07 56.6 38 65.8
Zm00001eb316420 Zea mays HOM05D002669 ORTHO05D003001 8.4e-07 56.6 54 53.7
Atru.chr11.1413 Acer truncatum HOM05D002669 ORTHO05D003001 1.1e-06 56.2 57 50.9
ClCG09G020840 Citrullus lanatus HOM05D002669 ORTHO05D003001 1.1e-06 56.2 38 68.4
DCAR_019735 Daucus carota HOM05D002669 ORTHO05D003001 1.1e-06 56.2 38 65.8
ECA236G1092 Erigeron canadensis HOM05D002669 ORTHO05D003001 1.1e-06 56.2 38 63.2
Migut.E00673 Erythranthe guttata HOM05D002669 ORTHO05D003001 1.1e-06 56.2 38 65.8
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.1e-06 56.2 38 63.2
Atru.chr5.2134 Acer truncatum HOM05D002669 ORTHO05D003001 1.4e-06 55.8 57 50.9
Manes.13G064700 Manihot esculenta HOM05D002669 ORTHO05D003001 1.4e-06 55.8 38 65.8
TAR629G1803 Trochodendron aralioides HOM05D002669 ORTHO05D003001 1.4e-06 55.8 38 63.2
unitig_699.g19639 Utricularia gibba HOM05D002669 ORTHO05D003001 1.4e-06 55.8 53 50.9
HPP92_019688 Vanilla planifolia HOM05D002669 ORTHO05D003001 1.4e-06 55.8 38 68.4
Medtr5g084700 Medicago truncatula HOM05D002669 ORTHO05D003001 1.9e-06 55.5 38 63.2
CANSAT64G1691 Cannabis sativa HOM05D002669 ORTHO05D003001 2.5e-06 55.1 38 63.2
AUR62015103 Chenopodium quinoa HOM05D002669 ORTHO05D003716 2.5e-06 55.1 56 50.0
AUR62017565 Chenopodium quinoa HOM05D002669 ORTHO05D003001 2.5e-06 55.1 56 50.0
Ca_26279_v3 Cicer arietinum L. HOM05D002669 ORTHO05D003001 2.5e-06 55.1 52 50.0
MELO3C014447.2 Cucumis melo HOM05D002669 ORTHO05D003001 2.5e-06 55.1 38 65.8
ATR1101G088 Amborella trichopoda HOM05D002669 ORTHO05D003001 3.2e-06 54.7 54 50.0
COL.COLO4_05457 Corchorus olitorius HOM05D002669 ORTHO05D003001 3.2e-06 54.7 56 44.6
Lalb_Chr17g0347111 Lupinus albus HOM05D002669 ORTHO05D003001 3.2e-06 54.7 36 66.7
PSO302G0113 Papaver somniferum HOM05D002669 ORTHO05D003001 3.2e-06 54.7 56 48.2
Hund08465 Selenicereus undatus HOM05D002669 ORTHO05D003001 3.2e-06 54.7 56 50.0
Cc07_g19400 Coffea canephora HOM05D002669 ORTHO05D003001 4.2e-06 54.3 37 62.2
Duzib205G0186 Durio zibethinus HOM05D002669 ORTHO05D003001 4.2e-06 54.3 56 46.4
Glyma.20G012000 Glycine max HOM05D002669 ORTHO05D003001 4.2e-06 54.3 52 50.0
Medtr1g033550 Medicago truncatula HOM05D002669 ORTHO05D003001 4.2e-06 54.3 52 50.0
Medtr5g093920 Medicago truncatula HOM05D002669 ORTHO05D003001 4.2e-06 54.3 52 50.0
Phvul.003G014100 Phaseolus vulgaris HOM05D002669 ORTHO05D003001 4.2e-06 54.3 52 50.0
Psat6g095480 Pisum sativum HOM05D002669 ORTHO05D003001 4.2e-06 54.3 52 50.0
VMungo1215G1730 Vigna mungo HOM05D002669 ORTHO05D003001 4.2e-06 54.3 52 50.0
Gohir.D03G091500 Gossypium hirsutum HOM05D002669 ORTHO05D003001 5.5e-06 53.9 56 46.4
Gorai.003G094900 Gossypium raimondii HOM05D002669 ORTHO05D003001 5.5e-06 53.9 56 46.4
Lj2g0008456 Lotus japonicus HOM05D002669 ORTHO05D003001 5.5e-06 53.9 52 48.1
Oeu054519.1 Olea europaea HOM05D002669 ORTHO05D003001 5.5e-06 53.9 56 50.0
Aqoxy3G03501 Aquilegia oxysepala HOM05D002669 ORTHO05D003001 7.1e-06 53.5 39 59.0
Thecc.07G054300 Theobroma cacao HOM05D002669 ORTHO05D003001 7.1e-06 53.5 56 44.6
AUR62008367 Chenopodium quinoa HOM05D002669 ORTHO05D003001 9.3e-06 53.1 52 46.2
DCAR_024740 Daucus carota HOM05D002669 ORTHO05D003001 9.3e-06 53.1 57 47.4
PSO210G2424 Papaver somniferum HOM05D002669 ORTHO05D003001 9.3e-06 53.1 38 57.9


User provided reference genes

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