Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 6.5e-282 973.4 493 100.0
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 5.8e-222 774.2 494 81.0
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 3.8e-221 771.5 496 80.4
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 9.3e-220 766.9 496 80.4
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 3.0e-218 761.9 477 82.2
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 3.9e-218 761.5 496 80.2
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 8.7e-218 760.4 496 79.8
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 3.3e-217 758.4 496 80.2
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 6.2e-216 754.2 496 79.4
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.3e-210 736.5 431 87.7
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 6.7e-210 734.2 503 76.9
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 7.6e-206 720.7 433 84.5
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 1.1e-201 706.8 496 75.4
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 1.5e-201 706.4 496 75.6
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 4.5e-190 668.3 507 70.2
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 1.9e-188 662.9 466 74.2
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 2.7e-187 659.1 509 68.2
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 4.4e-185 651.7 491 69.5
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 5.7e-185 651.4 500 69.6
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 2.4e-183 646.0 519 68.6
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 5.9e-182 641.3 518 67.2
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 7.7e-182 641.0 503 68.6
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 1.0e-181 640.6 500 68.0
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 1.0e-181 640.6 514 67.7
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 6.5e-181 637.9 514 67.3
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 3.2e-180 635.6 507 66.5
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 4.7e-179 631.7 501 67.9
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 6.1e-179 631.3 479 68.9
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 1.8e-178 629.8 492 68.3
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 2.3e-178 629.4 507 66.1
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 1.5e-177 626.7 505 67.9
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 1.5e-177 626.7 517 66.3
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 4.4e-177 625.2 511 65.6
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 5.7e-177 624.8 503 67.2
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 7.5e-177 624.4 499 65.3
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 9.7e-177 624.0 507 66.1
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.7e-176 623.2 509 66.2
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 1.4e-175 620.2 460 70.4
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 2.4e-175 619.4 498 66.3
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 3.1e-175 619.0 477 69.2
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 2.0e-174 616.3 498 65.7
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 1.0e-173 614.0 505 64.2
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 2.2e-173 612.8 554 60.8
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 2.2e-173 612.8 489 67.7
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 1.9e-172 609.8 505 64.0
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 2.5e-172 609.4 496 65.3
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 3.6e-171 605.5 505 63.2
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 6.1e-171 604.7 500 65.8
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 6.1e-171 604.7 504 64.3
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.0e-170 604.0 471 68.4
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 6.8e-170 601.3 501 63.3
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 3.4e-169 599.0 507 64.5
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 4.4e-169 598.6 518 63.9
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 4.4e-169 598.6 499 62.9
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 9.8e-169 597.4 497 64.8
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 1.3e-168 597.0 491 64.8
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 2.8e-168 595.9 503 63.8
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 6.3e-168 594.7 460 66.1
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 8.3e-168 594.3 499 63.3
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 1.4e-167 593.6 491 64.4
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 2.4e-167 592.8 502 63.1
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 2.4e-167 592.8 467 65.3
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 3.1e-167 592.4 492 65.7
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 3.1e-167 592.4 523 62.1
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.1e-164 583.9 482 66.0
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 1.1e-164 583.9 515 60.8
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 1.1e-164 583.9 462 66.5
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 1.9e-164 583.2 441 66.9
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.5e-164 581.6 481 65.5
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 5.5e-164 581.6 435 69.4
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 4.0e-162 575.5 481 64.7
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 6.8e-162 574.7 516 60.3
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 1.5e-161 573.5 450 67.3
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.0e-161 573.2 481 64.4
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 2.0e-161 573.2 445 67.2
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 3.4e-161 572.4 397 74.6
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 4.9e-160 568.5 481 64.2
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 6.3e-160 568.2 478 65.5
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 7.0e-159 564.7 410 70.2
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 5.6e-156 555.1 447 66.2
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.2e-155 553.9 503 60.4
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 3.0e-154 549.3 406 70.4
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 1.5e-153 547.0 505 58.8
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 3.4e-153 545.8 465 61.5
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 4.4e-153 545.4 488 59.6
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 1.7e-152 543.5 437 64.5
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.6e-150 537.0 556 54.5
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 1.3e-149 533.9 453 61.8
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 1.1e-146 524.2 500 60.0
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 6.8e-146 521.5 368 70.9
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 1.5e-145 520.4 400 69.0
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 2.0e-145 520.0 435 62.5
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.7e-141 506.9 408 64.5
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 1.8e-138 496.9 371 71.2
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 8.6e-133 478.0 386 63.7
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 2.1e-131 473.4 334 72.5
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 4.7e-131 472.2 467 58.0
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 2.4e-130 469.9 397 62.0
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 6.4e-128 461.8 466 54.9
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 2.4e-127 459.9 373 65.1
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 1.2e-123 447.6 437 56.3
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 3.3e-116 422.9 353 63.2
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 4.3e-116 422.5 306 68.3
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 1.2e-110 404.4 444 51.4
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 1.6e-107 394.0 400 53.8
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 3.7e-107 392.9 362 57.2
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.6e-105 386.7 388 54.4
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 2.2e-104 383.6 536 44.8
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 1.8e-101 374.0 272 70.6
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 8.7e-101 371.7 452 49.1
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 2.1e-94 350.5 361 56.5
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 3.5e-94 349.7 395 48.4
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 4.6e-94 349.4 282 66.3
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.6e-86 324.3 246 66.3
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 8.5e-80 302.0 355 48.2
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 3.0e-77 293.5 331 50.5
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 1.3e-64 251.5 471 35.9
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 7.7e-57 225.7 435 34.5
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 7.7e-57 225.7 284 47.9
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 8.3e-35 152.5 118 66.9
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.7e-33 147.5 139 59.7
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 4.3e-31 140.2 187 47.6
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 1.5e-28 131.7 128 57.0
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 5.4e-26 123.2 216 36.6
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 4.4e-20 103.6 100 52.0
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.4e-18 98.6 200 34.0
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 4.1e-18 97.1 133 51.1
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.3e-16 91.3 91 52.7
BcaB03g15197 Brassica carinata HOM05D063035 ORTHO05D093409 8.6e-16 89.4 112 52.7
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 3.3e-15 87.4 166 41.0
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 5.6e-15 86.7 68 58.8
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 3.1e-13 80.9 95 46.3
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 1.7e-11 75.1 263 28.1
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 6.4e-11 73.2 53 66.0
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 6.0e-09 66.6 164 32.9
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 1.9e-07 61.6 65 53.8


User provided reference genes

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