Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31csc464G70 Aethionema arabicum HOM05D001325 ORTHO05D001540 7.0e-40 166.8 81 100.0
AL3G44440 Arabidopsis lyrata HOM05D001325 ORTHO05D001540 1.2e-31 139.4 70 95.7
AT2G07675 Arabidopsis thaliana HOM05D001325 ORTHO05D001540 1.2e-31 139.4 70 95.7
ATMG00980 Arabidopsis thaliana HOM05D001325 ORTHO05D001540 1.2e-31 139.4 70 95.7
CARHR283240 Cardamine hirsuta HOM05D001325 ORTHO05D001540 1.6e-31 139.0 70 94.3
Sopen00g002640 Solanum pennellii HOM05D001325 ORTHO05D001540 3.5e-31 137.9 70 94.3
BNapus_Darmor_BZH_scaffold_234p00060 Brassica napus HOM05D001325 ORTHO05D001540 4.5e-31 137.5 70 94.3
BolSC28t60355H Brassica oleracea HOM05D001325 ORTHO05D001540 4.5e-31 137.5 70 94.3
BraSC48t46256Z Brassica rapa HOM05D001325 ORTHO05D001540 4.5e-31 137.5 70 94.3
BraSC77t46665Z Brassica rapa HOM05D001325 ORTHO05D001540 4.5e-31 137.5 70 94.3
SHI36383 Sapria himalayana HOM05D001325 ORTHO05D001540 7.8e-31 136.7 70 92.9
SHI39812 Sapria himalayana HOM05D001325 ORTHO05D001540 7.8e-31 136.7 70 92.9
SHI49994 Sapria himalayana HOM05D001325 ORTHO05D001540 7.8e-31 136.7 70 92.9
SHI50801 Sapria himalayana HOM05D001325 ORTHO05D001540 7.8e-31 136.7 70 92.9
SHI51700 Sapria himalayana HOM05D001325 ORTHO05D001540 7.8e-31 136.7 70 92.9
SHI53190 Sapria himalayana HOM05D001325 ORTHO05D001540 7.8e-31 136.7 70 92.9
SHI53369 Sapria himalayana HOM05D001325 ORTHO05D001540 7.8e-31 136.7 70 92.9
SHI53372 Sapria himalayana HOM05D001325 ORTHO05D001540 7.8e-31 136.7 70 92.9
SHI43533 Sapria himalayana HOM05D001325 ORTHO05D001540 2.3e-30 135.2 70 92.9
SHI36935 Sapria himalayana HOM05D001325 ORTHO05D001540 5.0e-30 134.0 70 90.0
SHI39777 Sapria himalayana HOM05D001325 ORTHO05D001540 5.0e-30 134.0 70 90.0
CAN.G889.5 Capsicum annuum HOM05D001325 ORTHO05D001540 8.6e-30 133.3 70 91.4
SHI36142 Sapria himalayana HOM05D001325 ORTHO05D001540 8.6e-30 133.3 70 90.0
SHI36771 Sapria himalayana HOM05D001325 ORTHO05D001540 8.6e-30 133.3 67 95.5
SHI36782 Sapria himalayana HOM05D001325 ORTHO05D001540 8.6e-30 133.3 67 95.5
SHI36581 Sapria himalayana HOM05D001325 ORTHO05D001540 1.5e-29 132.5 70 90.0
Nitab4.5_0001796g0270 Nicotiana tabacum HOM05D001325 ORTHO05D001540 2.5e-29 131.7 70 88.6
SHI52150 Sapria himalayana HOM05D001325 ORTHO05D001540 2.5e-29 131.7 70 90.0
SHI51612 Sapria himalayana HOM05D001325 ORTHO05D001540 3.3e-29 131.3 67 94.0
arahy.Tifrunner.gnm1.ann1.6A3TYM Arachis hypogaea HOM05D007194 ORTHO05D009182 4.3e-29 131.0 70 91.4
arahy.Tifrunner.gnm1.ann1.UX1VFS Arachis hypogaea HOM05D007194 ORTHO05D009182 4.3e-29 131.0 70 91.4
LjContig00315g0013534 Lotus japonicus HOM05D001325 ORTHO05D001540 4.3e-29 131.0 70 91.4
SHI44670 Sapria himalayana HOM05D001325 ORTHO05D001540 5.6e-29 130.6 70 90.0
SHI54160 Sapria himalayana HOM05D001325 ORTHO05D001540 5.6e-29 130.6 70 88.6
SHI46908 Sapria himalayana HOM05D001325 ORTHO05D001540 1.2e-28 129.4 70 90.0
SHI51228 Sapria himalayana HOM05D001325 ORTHO05D001540 1.2e-28 129.4 70 90.0
Aqoxy12s039 Aquilegia oxysepala HOM05D001325 ORTHO05D001540 1.6e-28 129.0 70 90.0
MSTRG.3525 Avicennia marina HOM05D001325 ORTHO05D001540 1.6e-28 129.0 70 88.6
DCAR_016146 Daucus carota HOM05D001325 ORTHO05D001540 1.6e-28 129.0 70 90.0
DCAR_032436 Daucus carota HOM05D001325 ORTHO05D001540 1.6e-28 129.0 70 90.0
HanXRQChr00c0055g0571461 Helianthus annuus HOM05D001325 ORTHO05D001540 1.6e-28 129.0 70 90.0
HanXRQChr16g0504411 Helianthus annuus HOM05D001325 ORTHO05D001540 1.6e-28 129.0 70 90.0
HanXRQMTg0579641 Helianthus annuus HOM05D001325 ORTHO05D001540 1.6e-28 129.0 70 90.0
Lsat_1_v5_gn_1_24001 Lactuca sativa HOM05D001325 ORTHO05D001540 1.6e-28 129.0 70 90.0
Lsat_1_v5_gn_5_16521 Lactuca sativa HOM05D001325 ORTHO05D001540 1.6e-28 129.0 70 90.0
Sed0022288 Sechium edule HOM05D001325 ORTHO05D001540 1.6e-28 129.0 70 90.0
Sed0024579 Sechium edule HOM05D001325 ORTHO05D001540 1.6e-28 129.0 70 90.0
SGA_v2.0_scaffold255G45513 Striga asiatica HOM05D001325 ORTHO05D001540 1.6e-28 129.0 70 87.1
unitig_87.g28032 Utricularia gibba HOM05D001325 ORTHO05D001540 1.6e-28 129.0 70 88.6
SHI38210 Sapria himalayana HOM05D001325 ORTHO05D001540 2.1e-28 128.6 69 89.9
PGR028G0006 Punica granatum HOM05D001325 ORTHO05D001540 3.6e-28 127.9 70 90.0
SHI49663 Sapria himalayana HOM05D001325 ORTHO05D001540 3.6e-28 127.9 70 88.6
SHI49794 Sapria himalayana HOM05D001325 ORTHO05D001540 3.6e-28 127.9 70 87.1
HanXRQChr01g0017121 Helianthus annuus HOM05D001325 ORTHO05D001540 4.7e-28 127.5 70 88.6
HanXRQChr10g0305211 Helianthus annuus HOM05D001325 ORTHO05D001540 4.7e-28 127.5 70 88.6
Nitab4.5_0001788g0300 Nicotiana tabacum HOM05D001325 ORTHO05D001540 4.7e-28 127.5 70 88.6
SHI35326 Sapria himalayana HOM05D001325 ORTHO05D001540 4.7e-28 127.5 70 88.6
Oeu040255.1 Olea europaea HOM05D001325 ORTHO05D001540 6.1e-28 127.1 70 85.7
Sc03g0005010 Simmondsia chinensis HOM05D001325 ORTHO05D001540 6.1e-28 127.1 70 90.0
Sc04g0005520 Simmondsia chinensis HOM05D001325 ORTHO05D001540 6.1e-28 127.1 70 90.0
RcHm_v2.0_MTg0498391 Rosa chinensis HOM05D001325 ORTHO05D001540 1.0e-27 126.3 70 87.1
SalBow1G5748 Salvia bowleyana HOM05D001325 ORTHO05D001540 1.4e-27 125.9 70 85.7
SHI42173 Sapria himalayana HOM05D001325 ORTHO05D001540 1.4e-27 125.9 70 85.7
Hund27587 Selenicereus undatus HOM05D001325 ORTHO05D001540 1.8e-27 125.6 70 88.6
Hund27666 Selenicereus undatus HOM05D001325 ORTHO05D001540 1.8e-27 125.6 70 88.6
Hund27817 Selenicereus undatus HOM05D001325 ORTHO05D001540 1.8e-27 125.6 70 88.6
Hund28083 Selenicereus undatus HOM05D001325 ORTHO05D001540 1.8e-27 125.6 70 88.6
Hund28867 Selenicereus undatus HOM05D001325 ORTHO05D001540 1.8e-27 125.6 70 88.6
Hund28882 Selenicereus undatus HOM05D001325 ORTHO05D001540 1.8e-27 125.6 70 88.6
Hund29085 Selenicereus undatus HOM05D001325 ORTHO05D001540 1.8e-27 125.6 70 88.6
Hund29471 Selenicereus undatus HOM05D001325 ORTHO05D001540 1.8e-27 125.6 70 88.6
Hund29893 Selenicereus undatus HOM05D001325 ORTHO05D001540 1.8e-27 125.6 70 88.6
Lalb_Chr17g0337391 Lupinus albus HOM05D001325 ORTHO05D001540 2.3e-27 125.2 70 87.1
SHI38206 Sapria himalayana HOM05D001325 ORTHO05D001540 2.3e-27 125.2 70 87.1
SHI43970 Sapria himalayana HOM05D001325 ORTHO05D001540 2.3e-27 125.2 70 84.3
SHI49107 Sapria himalayana HOM05D001325 ORTHO05D001540 2.3e-27 125.2 67 89.6
MBI10_g41321_MAGBIO Magnolia biondii HOM05D001325 ORTHO05D001540 3.0e-27 124.8 72 87.5
arahy.Tifrunner.gnm1.ann1.ALHF99 Arachis hypogaea HOM05D001325 ORTHO05D001540 4.0e-27 124.4 67 92.5
HanXRQChr10g0297181 Helianthus annuus HOM05D001325 ORTHO05D001540 4.0e-27 124.4 70 85.7
SHI35190 Sapria himalayana HOM05D001325 ORTHO05D001540 6.8e-27 123.6 70 84.3
COL.COLO4_04481 Corchorus olitorius HOM05D001325 ORTHO05D001540 8.9e-27 123.2 70 85.7
Medtr0082s0040 Medicago truncatula HOM05D001325 ORTHO05D001540 8.9e-27 123.2 70 87.1
SHI54388 Sapria himalayana HOM05D001325 ORTHO05D001540 8.9e-27 123.2 70 85.7
PGR031G1129 Punica granatum HOM05D001325 ORTHO05D001540 1.2e-26 122.9 70 84.3
SHI33930 Sapria himalayana HOM05D001325 ORTHO05D001540 1.2e-26 122.9 70 85.7
SHI54219 Sapria himalayana HOM05D001325 ORTHO05D001540 1.2e-26 122.9 70 85.7
SHI39476 Sapria himalayana HOM05D001325 ORTHO05D001540 2.6e-26 121.7 70 82.9
SHI53577 Sapria himalayana HOM05D001325 ORTHO05D001540 5.7e-26 120.6 63 90.5
VMungo1309G2626 Vigna mungo HOM05D001325 ORTHO05D001540 5.7e-26 120.6 67 91.0
SHI51658 Sapria himalayana HOM05D001325 ORTHO05D001540 7.5e-26 120.2 70 82.9
arahy.Tifrunner.gnm1.ann1.KX3NGM Arachis hypogaea HOM05D001325 ORTHO05D001540 9.8e-26 119.8 64 92.2
PGSC0003DMG400021744 Solanum tuberosum HOM05D001325 ORTHO05D001540 1.7e-25 119.0 62 91.9
SHI36567 Sapria himalayana HOM05D001325 ORTHO05D001540 2.2e-25 118.6 67 89.6
SabraMtG0001800 Salix brachista HOM05D001325 ORTHO05D001540 2.9e-25 118.2 77 80.5
SHI44576 Sapria himalayana HOM05D001325 ORTHO05D001540 1.4e-24 115.9 67 82.1
SHI27347 Sapria himalayana HOM05D001325 ORTHO05D001540 4.1e-24 114.4 67 85.1
SHI36629 Sapria himalayana HOM05D001325 ORTHO05D001540 2.7e-23 111.7 65 84.6
CARHR287250 Cardamine hirsuta HOM05D001325 ORTHO05D001540 3.5e-23 111.3 57 93.0
FvH4_5g00530 Fragaria vesca HOM05D001325 ORTHO05D001540 1.3e-22 109.4 69 76.8
FvH4_7g21740 Fragaria vesca HOM05D001325 ORTHO05D001540 1.3e-22 109.4 69 76.8
FAN03G1410 Fragaria x ananassa HOM05D001325 ORTHO05D001540 1.3e-22 109.4 69 76.8
FAN06G1419 Fragaria x ananassa HOM05D001325 ORTHO05D001540 1.3e-22 109.4 69 76.8
FAN06G2328 Fragaria x ananassa HOM05D001325 ORTHO05D001540 1.3e-22 109.4 69 76.8
FAN08G2386 Fragaria x ananassa HOM05D001325 ORTHO05D001540 1.3e-22 109.4 69 76.8
FAN10G4039 Fragaria x ananassa HOM05D001325 ORTHO05D001540 1.3e-22 109.4 69 76.8
FAN18G4430 Fragaria x ananassa HOM05D001325 ORTHO05D001540 1.3e-22 109.4 69 76.8
RcHm_v2.0_Chr5g0080691 Rosa chinensis HOM05D001325 ORTHO05D001540 1.3e-22 109.4 69 76.8
RcHm_v2.0_Chr7g0201871 Rosa chinensis HOM05D001325 ORTHO05D001540 1.3e-22 109.4 69 76.8
Nitab4.5_0002716g0110 Nicotiana tabacum HOM05D001325 ORTHO05D001540 1.7e-22 109.0 58 91.4
Peaxi162Scf00588g00111 Petunia axillaris HOM05D001325 ORTHO05D005438 2.3e-22 108.6 58 91.4
FAN13G1785 Fragaria x ananassa HOM05D001325 ORTHO05D001540 3.9e-22 107.8 69 75.4
arahy.Tifrunner.gnm1.ann1.2YD7KU Arachis hypogaea HOM05D001325 ORTHO05D001540 5.0e-22 107.5 58 91.4
arahy.Tifrunner.gnm1.ann1.TPY4ZQ Arachis hypogaea HOM05D001325 ORTHO05D001540 5.0e-22 107.5 58 91.4
arahy.Tifrunner.gnm1.ann1.XXM48B Arachis hypogaea HOM05D001325 ORTHO05D001540 5.0e-22 107.5 58 91.4
SHI34630 Sapria himalayana HOM05D001325 ORTHO05D001540 8.6e-22 106.7 54 94.4
PSO170G5129 Papaver somniferum HOM05D001325 ORTHO05D001540 1.5e-21 105.9 68 76.5
PSO357G0201 Papaver somniferum HOM05D001325 ORTHO05D001540 1.5e-21 105.9 68 76.5
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 1.9e-21 105.5 58 89.7
SHI40461 Sapria himalayana HOM05D001325 ORTHO05D001540 1.9e-21 105.5 68 77.9
SHI49748 Sapria himalayana HOM05D001325 ORTHO05D001540 4.3e-21 104.4 70 75.7
MBI05_g05342_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 9.5e-21 103.2 59 86.4
AagrBONN_evm.TU.Sc2ySwM_344.1250 Anthoceros agrestis HOM05D001325 ORTHO05D001540 1.2e-20 102.8 70 70.0
SHI48150 Sapria himalayana HOM05D001325 ORTHO05D001540 1.6e-20 102.4 65 78.5
CDE02G2710 Ceratophyllum demersum HOM05D001325 ORTHO05D001540 3.6e-20 101.3 58 86.2
SHI38315 Sapria himalayana HOM05D001325 ORTHO05D001540 4.7e-20 100.9 65 75.4
SHI46090 Sapria himalayana HOM05D001325 ORTHO05D001540 6.2e-20 100.5 54 88.9
SHI38566 Sapria himalayana HOM05D001325 ORTHO05D001540 1.4e-19 99.4 54 87.0
Aa31csc239G10 Aethionema arabicum HOM05D001325 ORTHO05D001540 4.0e-19 97.8 46 100.0
SHI50625 Sapria himalayana HOM05D001325 ORTHO05D001540 5.2e-19 97.4 54 88.9
SHI35980 Sapria himalayana HOM05D001325 ORTHO05D001540 1.5e-18 95.9 59 81.4
SHI35334 Sapria himalayana HOM05D001325 ORTHO05D001540 9.8e-18 93.2 55 85.5
COL.COLO4_03981 Corchorus olitorius HOM05D001325 ORTHO05D001540 1.3e-17 92.8 65 72.3
Nitab4.5_0000172g1180 Nicotiana tabacum HOM05D001325 ORTHO05D001540 1.7e-17 92.4 51 88.2
HanXRQChr12g0367971 Helianthus annuus HOM05D001325 ORTHO05D001540 2.2e-17 92.0 66 71.2
Lalb_Chr03g0038861 Lupinus albus HOM05D001325 ORTHO05D001540 8.3e-17 90.1 50 88.0
SMO116G0334 Selaginella moellendorffii HOM05D001325 ORTHO05D001540 7.0e-16 87.0 69 62.3
SHI39119 Sapria himalayana HOM05D001325 ORTHO05D001540 7.8e-15 83.6 54 75.9
HanXRQChr08g0236211 Helianthus annuus HOM05D001325 ORTHO05D001540 1.7e-14 82.4 48 81.2
Lalb_Chr00c24g0406961 Lupinus albus HOM05D001325 ORTHO05D001540 2.3e-14 82.0 70 62.9
COL.COLO4_02562 Corchorus olitorius HOM05D001325 ORTHO05D001540 2.1e-12 75.5 70 52.9
SHI00829 Sapria himalayana HOM05D001325 ORTHO05D001540 2.3e-11 72.0 38 92.1
Haze_27062 Corylus avellana HOM05D001325 ORTHO05D001540 4.0e-11 71.2 70 54.3
TPR.G36985 Trifolium pratense HOM05D001325 ORTHO05D001540 4.0e-11 71.2 46 80.4
PSO384G1460 Papaver somniferum HOM05D001325 ORTHO05D001540 6.8e-11 70.5 68 52.9
SHI48751 Sapria himalayana HOM05D001325 ORTHO05D001540 2.6e-10 68.6 67 58.2
SMO364G0929 Selaginella moellendorffii HOM05D001325 ORTHO05D001540 2.6e-10 68.6 51 66.7
Medtr1g084830 Medicago truncatula HOM05D008018 ORTHO05D001531 3.7e-09 64.7 39 82.1
Lsat_1_v5_gn_9_49240 Lactuca sativa HOM05D000533 ORTHO05D001069 1.1e-08 63.2 32 90.6
SHI41240 Sapria himalayana HOM05D001325 ORTHO05D001540 9.2e-08 60.1 31 90.3
SHI46260 Sapria himalayana HOM05D001325 ORTHO05D001540 9.2e-08 60.1 31 90.3
SHI48903 Sapria himalayana HOM05D001325 ORTHO05D001540 9.2e-08 60.1 31 90.3
Cre02.g144400 Chlamydomonas reinhardtii HOM05D001325 ORTHO05D001540 1.2e-07 59.7 71 50.7
SHI53781 Sapria himalayana HOM05D001325 ORTHO05D001540 6.0e-07 57.4 31 87.1
SHI42503 Sapria himalayana HOM05D001325 ORTHO05D001540 3.0e-06 55.1 31 80.6


User provided reference genes

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