Gene: COL.COLO4_02562
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_02562
- Transcript Identifier COL.rna1560
- Gene Type Coding gene
- Location AWUE01005595.1 : 113-1014 : positive
Gene Family Information
- ID HOM05D001325
- #Genes/#Species 474/79
- Phylogenetic origin
- ID ORTHO05D001540
- #Genes/#Species 392/70
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna1560
- GenBank OMP12931.1
- id gene2542
- gene_name COLO4_02562
- uniprot A0A1R3L0S9
Descriptions
- Description Ribosomal protein S5/S7
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | IEA | GOA Database | translation | |
| GO:0006412 | IEA | InterPro | translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0019843 | IEA | GOA Database | rRNA binding | |
| GO:0003735 | IEA | GOA Database | structural constituent of ribosome | |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | ATCG00905 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009536 | IEA | GOA Database | plastid | |
| GO:0005840 | IEA | GOA Database | ribosome | |
| GO:0005840 | IEA | InterPro | ribosome | |
| GO:0015935 | IEA | GOA Database | small ribosomal subunit | |
| GO:0015935 | IEA | InterPro | small ribosomal subunit | |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | ATCG00905 |
| GO:0009534 | ISO | PLAZA Integrative Orthology | chloroplast thylakoid | ATCG00905 |
| GO:0000312 | ISO | PLAZA Integrative Orthology | plastid small ribosomal subunit | ATCG00905 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036823 | Ribosomal protein S7 domain superfamily |
| IPR012340 | Nucleic acid-binding, OB-fold |
| IPR023798 | Ribosomal protein S7 domain |
| IPR000235 | Ribosomal protein S5/S7 |
| IPR006032 | Ribosomal protein S12/S23 |
| IPR005717 | Ribosomal protein S7, bacterial/organellar-type |
| IPR005679 | Ribosomal protein S12, bacterial-type |
| Mapman id | Description |
|---|---|
| 17.7.2.2.7 | Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psRPS7 |