Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001325', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '474', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'Aa31csc239G10' => 'aar', 'Aa31csc464G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1250' => 'aag', 'Ah.10g028160' => 'amhyb', 'AL3G44430' => 'aly', 'AL3G44440' => 'aly', 'Aqoxy12s029' => 'aox', 'Aqoxy12s039' => 'aox', 'Aqoxy4G02026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TB2XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2YD7KU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LX9HH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6K92H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALHF99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D81V2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGV151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5DDSF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5HWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IEGY60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN64LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX3NGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJZL7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8C5RR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7VYQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPY4ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XXM48B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY6KWR' => 'arhy', 'AT2G07675' => 'ath', 'AT2G07751' => 'ath', 'ATCG00905' => 'ath', 'ATCG01230' => 'ath', 'ATMG00980' => 'ath', 'ATMG00990' => 'ath', 'ATR1169G002' => 'atr', 'Atru.chr3.4001' => 'acertr', 'Atru.chr4.739' => 'acertr', 'Atru.chr6.700' => 'acertr', 'BcaC05g26888' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_234p00060' => 'bna', 'BolC2t10588H' => 'bol', 'BolSC28t60355H' => 'bol', 'BolSC28t60356H' => 'bol', 'BolSC29t60558H' => 'bol', 'BolSC29t60626H' => 'bol', 'BolSC35t60681H' => 'bol', 'BolSC35t60716H' => 'bol', 'BolSC37t60786H' => 'bol', 'BolSC45t60898H' => 'bol', 'BolSC45t60921H' => 'bol', 'BolSC47t61057H' => 'bol', 'BolSC47t61069H' => 'bol', 'BolSC49t61131H' => 'bol', 'BolSC49t61154H' => 'bol', 'BraSC103t45495Z' => 'bra', 'BraSC138t45523Z' => 'bra', 'BraSC143t45667Z' => 'bra', 'BraSC48t46255Z' => 'bra', 'BraSC48t46256Z' => 'bra', 'BraSC58t46451Z' => 'bra', 'BraSC59t46512Z' => 'bra', 'BraSC59t46559Z' => 'bra', 'BraSC77t46664Z' => 'bra', 'BraSC77t46665Z' => 'bra', 'C06p21310' => 'bna', 'C06p23120' => 'bna', 'C09p24710' => 'bna', 'CAN.G1741.3' => 'can', 'CAN.G266.7' => 'can', 'CAN.G351.18' => 'can', 'CAN.G889.5' => 'can', 'CANSAT25G2613' => 'cansat', 'CARHR282350' => 'chi', 'CARHR283240' => 'chi', 'CARHR283250' => 'chi', 'CARHR287250' => 'chi', 'CDE02G1246' => 'cde', 'CDE02G2710' => 'cde', 'CiPaw.08G042500' => 'cil', 'CiPaw.08G172200' => 'cil', 'CiPaw.08G173300' => 'cil', 'ClCG00G001510' => 'cla', 'COL.COLO4_01630' => 'col', 'COL.COLO4_02562' => 'col', 'COL.COLO4_03024' => 'col', 'COL.COLO4_03981' => 'col', 'COL.COLO4_04481' => 'col', 'Cpa.g.sc87.115' => 'cpa', 'Cre02.g144400' => 'cre', 'Cre08.g378900' => 'cre', 'CsaV3_1G007720' => 'csa', 'CsaV3_UNG208560' => 'csa', 'CsaV3_UNG210040' => 'csa', 'CSS0016656' => 'camsi', 'CSS0035753' => 'camsi', 'DCAR_016146' => 'dca', 'DCAR_032435' => 'dca', 'DCAR_032436' => 'dca', 'Duzib132G0580' => 'dzi', 'EL10Ac9g21012' => 'bvu', 'EL10As15g24102' => 'bvu', 'EL10As6g23662' => 'bvu', 'Eucgr.E00717' => 'egr', 'Eucgr.H01184' => 'egr', 'Eucgr.H03985' => 'egr', 'Eucgr.K01909' => 'egr', 'Eucgr.L01873' => 'egr', 'FAN03G1410' => 'fan', 'FAN06G1419' => 'fan', 'FAN06G2328' => 'fan', 'FAN08G2386' => 'fan', 'FAN10G4039' => 'fan', 'FAN13G1785' => 'fan', 'FAN18G4430' => 'fan', 'FAN21G0802' => 'fan', 'FvH4_5g00530' => 'fve', 'FvH4_7g21740' => 'fve', 'FvH4_c3g00110' => 'fve', 'Gohir.1Z050302' => 'ghi', 'Gohir.A01G071550' => 'ghi', 'Gohir.A01G143838' => 'ghi', 'Gohir.A02G100900' => 'ghi', 'Gohir.A03G020550' => 'ghi', 'Gohir.A03G089701' => 'ghi', 'Gohir.A03G116614' => 'ghi', 'Gohir.A04G039361' => 'ghi', 'Gohir.A04G061885' => 'ghi', 'Gohir.A04G062885' => 'ghi', 'Gohir.A05G323772' => 'ghi', 'Gohir.A08G093662' => 'ghi', 'Gohir.A08G123750' => 'ghi', 'Gohir.A09G045600' => 'ghi', 'Gohir.A09G045746' => 'ghi', 'Gohir.A09G103232' => 'ghi', 'Gohir.A09G107601' => 'ghi', 'Gohir.A11G179832' => 'ghi', 'Gohir.A11G179998' => 'ghi', 'Gohir.A11G295125' => 'ghi', 'Gohir.A13G086470' => 'ghi', 'Gohir.D01G137751' => 'ghi', 'Gohir.D02G090033' => 'ghi', 'Gohir.D02G117554' => 'ghi', 'Gohir.D04G096628' => 'ghi', 'Gohir.D08G108608' => 'ghi', 'Gohir.D10G177500' => 'ghi', 'Gohir.D10G181800' => 'ghi', 'Gohir.D10G245316' => 'ghi', 'Gohir.D12G017000' => 'ghi', 'Gorai.004G116100' => 'gra', 'Gorai.005G077900' => 'gra', 'Gorai.005G100800' => 'gra', 'Gorai.005G170800' => 'gra', 'Gorai.008G017300' => 'gra', 'Gorai.011G198300' => 'gra', 'Gorai.011G203400' => 'gra', 'Gorai.011G282800' => 'gra', 'Gorai.012G049000' => 'gra', 'GSVIVG01002752001' => 'vvi', 'HanXRQChr00c0055g0571461' => 'han', 'HanXRQChr01g0009331' => 'han', 'HanXRQChr01g0017121' => 'han', 'HanXRQChr01g0027141' => 'han', 'HanXRQChr08g0224261' => 'han', 'HanXRQChr08g0236211' => 'han', 'HanXRQChr10g0297181' => 'han', 'HanXRQChr10g0305211' => 'han', 'HanXRQChr12g0367961' => 'han', 'HanXRQChr12g0367971' => 'han', 'HanXRQChr12g0370991' => 'han', 'HanXRQChr15g0488691' => 'han', 'HanXRQChr16g0504411' => 'han', 'HanXRQCPg0580291' => 'han', 'HanXRQCPg0580431' => 'han', 'HanXRQMTg0579641' => 'han', 'Haze_27062' => 'cav', 'Hma1.2p1_1244F.1_g270080' => 'hma', 'Hund07989' => 'sun', 'Hund08791' => 'sun', 'Hund20482' => 'sun', 'Hund22781' => 'sun', 'Hund23966' => 'sun', 'Hund27587' => 'sun', 'Hund27634' => 'sun', 'Hund27666' => 'sun', 'Hund27817' => 'sun', 'Hund27899' => 'sun', 'Hund27922' => 'sun', 'Hund28083' => 'sun', 'Hund28867' => 'sun', 'Hund28882' => 'sun', 'Hund28936' => 'sun', 'Hund28943' => 'sun', 'Hund28948' => 'sun', 'Hund28957' => 'sun', 'Hund28958' => 'sun', 'Hund28972' => 'sun', 'Hund28982' => 'sun', 'Hund29029' => 'sun', 'Hund29085' => 'sun', 'Hund29092' => 'sun', 'Hund29106' => 'sun', 'Hund29117' => 'sun', 'Hund29471' => 'sun', 'Hund29893' => 'sun', 'Hund30457' => 'sun', 'Hund30653' => 'sun', 'Hund30764' => 'sun', 'Hund30783' => 'sun', 'Hund30784' => 'sun', 'Hund30785' => 'sun', 'Hund30802' => 'sun', 'Hund30819' => 'sun', 'Hund30820' => 'sun', 'Hund30821' => 'sun', 'Hund30822' => 'sun', 'Hund30823' => 'sun', 'Hund30824' => 'sun', 'Hund30825' => 'sun', 'Hund30826' => 'sun', 'Hund30827' => 'sun', 'Hund30828' => 'sun', 'Hund30829' => 'sun', 'Hund30830' => 'sun', 'Hund30831' => 'sun', 'Hund30832' => 'sun', 'Hund30833' => 'sun', 'Hund30837' => 'sun', 'Hund30843' => 'sun', 'Hund30846' => 'sun', 'Hund30919' => 'sun', 'Hund30957' => 'sun', 'Hund30987' => 'sun', 'Hund30988' => 'sun', 'Hund31006' => 'sun', 'Hund31036' => 'sun', 'Hund31039' => 'sun', 'Hund31051' => 'sun', 'Hund31105' => 'sun', 'Lalb_Chr00c24g0406961' => 'lal', 'Lalb_Chr00c24g0406971' => 'lal', 'Lalb_Chr03g0038861' => 'lal', 'Lalb_Chr03g0038871' => 'lal', 'Lalb_Chr17g0337391' => 'lal', 'Lalb_Chr17g0337401' => 'lal', 'Lj2A1221T109' => 'lonja', 'LjContig00315g0013534' => 'lja', 'LjContig00315g0018892' => 'lja', 'Lsat_1_v5_gn_1_24001' => 'lsa', 'Lsat_1_v5_gn_1_95121' => 'lsa', 'Lsat_1_v5_gn_2_20620' => 'lsa', 'Lsat_1_v5_gn_4_116900' => 'lsa', 'Lsat_1_v5_gn_5_16521' => 'lsa', 'Lsat_1_v5_gn_5_16541' => 'lsa', 'Lsat_1_v5_gn_6_106840' => 'lsa', 'Lsat_1_v5_gn_7_341' => 'lsa', 'Lsat_1_v5_gn_8_97380' => 'lsa', 'Manes.06G021801' => 'mes', 'Manes.08G083670' => 'mes', 'Manes.09G011803' => 'mes', 'Mapoly0163s0017' => 'mpo', 'MBI05_g23316_MAGBIO' => 'mbi', 'MBI07_g03189_MAGBIO' => 'mbi', 'MBI08_g48230_MAGBIO' => 'mbi', 'MBI10_g41320_MAGBIO' => 'mbi', 'MBI10_g41321_MAGBIO' => 'mbi', 'MD05G1172200' => 'mdo', 'MD16G1012400' => 'mdo', 'Medtr0002s0280' => 'mtr', 'Medtr0082s0040' => 'mtr', 'Medtr0625s0020' => 'mtr', 'Medtr2g040140' => 'mtr', 'Medtr7g055840' => 'mtr', 'Medtr7g055910' => 'mtr', 'MELO3C000106.2' => 'cme', 'MELO3C003986.2' => 'cme', 'Migut.F01472' => 'egut', 'MSTRG.3525' => 'ama', 'MSTRG.3526' => 'ama', 'Nitab4.5_0000172g0450' => 'nta', 'Nitab4.5_0000172g0980' => 'nta', 'Nitab4.5_0000172g1180' => 'nta', 'Nitab4.5_0000172g1710' => 'nta', 'Nitab4.5_0000349g0200' => 'nta', 'Nitab4.5_0000692g0250' => 'nta', 'Nitab4.5_0000844g0170' => 'nta', 'Nitab4.5_0000844g0210' => 'nta', 'Nitab4.5_0000844g0260' => 'nta', 'Nitab4.5_0001170g0090' => 'nta', 'Nitab4.5_0001170g0100' => 'nta', 'Nitab4.5_0001348g0140' => 'nta', 'Nitab4.5_0001770g0040' => 'nta', 'Nitab4.5_0001770g0050' => 'nta', 'Nitab4.5_0001770g0060' => 'nta', 'Nitab4.5_0001788g0290' => 'nta', 'Nitab4.5_0001788g0300' => 'nta', 'Nitab4.5_0001788g0340' => 'nta', 'Nitab4.5_0001796g0230' => 'nta', 'Nitab4.5_0001796g0270' => 'nta', 'Nitab4.5_0002347g0060' => 'nta', 'Nitab4.5_0002716g0110' => 'nta', 'Nitab4.5_0003382g0070' => 'nta', 'Nitab4.5_0003713g0020' => 'nta', 'Nitab4.5_0004137g0060' => 'nta', 'Nitab4.5_0004721g0050' => 'nta', 'Nitab4.5_0005853g0070' => 'nta', 'Nitab4.5_0005853g0080' => 'nta', 'Nitab4.5_0006683g0140' => 'nta', 'Nitab4.5_0008835g0060' => 'nta', 'Nitab4.5_0009421g0030' => 'nta', 'Nitab4.5_0012234g0060' => 'nta', 'Nitab4.5_0016174g0030' => 'nta', 'Oeu002614.1' => 'oeu', 'Oeu038563.1' => 'oeu', 'Oeu040255.1' => 'oeu', 'Os12g0423142' => 'osa', 'Peaxi162Scf00001g04024' => 'pax', 'Peaxi162Scf00002g00218' => 'pax', 'Peaxi162Scf00489g00021' => 'pax', 'Peaxi162Scf00588g00111' => 'pax', 'PGR028G0006' => 'pgr', 'PGR028G0020' => 'pgr', 'PGR031G1129' => 'pgr', 'PGSC0003DMG400004141' => 'stu', 'PGSC0003DMG400021744' => 'stu', 'PGSC0003DMG400029876' => 'stu', 'Phvul.009G090248' => 'pvu', 'Potri.007G062001' => 'ptr', 'Potri.008G208300' => 'ptr', 'Pp3c21_8460' => 'ppa', 'Prupe.6G146800' => 'ppe', 'Psat0s4951g0160' => 'psa', 'PSO017G6547' => 'pso', 'PSO170G5129' => 'pso', 'PSO357G0201' => 'pso', 'PSO384G1460' => 'pso', 'QL93p0823_0004' => 'qlo', 'RcHm_v2.0_Chr5g0080691' => 'rch', 'RcHm_v2.0_Chr7g0201871' => 'rch', 'RcHm_v2.0_MTg0498381' => 'rch', 'RcHm_v2.0_MTg0498391' => 'rch', 'RhsimPtG0002900' => 'rsi', 'SabraMtG0001800' => 'sbr', 'SalBow1G0875' => 'sbo', 'SalBow1G2962' => 'sbo', 'SalBow1G5537' => 'sbo', 'SalBow1G5748' => 'sbo', 'SalBow1G6489' => 'sbo', 'SalBow1G6915' => 'sbo', 'SalBow1G7521' => 'sbo', 'SalBow2G0293' => 'sbo', 'Sc03g0005010' => 'sci', 'Sc04g0005510' => 'sci', 'Sc04g0005520' => 'sci', 'Sc16g0005190' => 'sci', 'Sc25g0005880' => 'sci', 'Sed0003644' => 'sed', 'Sed0019436' => 'sed', 'Sed0022288' => 'sed', 'Sed0024579' => 'sed', 'SEGI_23966' => 'sgi', 'SGA_v2.0_scaffold140G35498' => 'sas', 'SGA_v2.0_scaffold255G45400' => 'sas', 'SGA_v2.0_scaffold255G45513' => 'sas', 'SGA_v2.0_scaffold893G53704' => 'sas', 'SHI00829' => 'shi', 'SHI15029' => 'shi', 'SHI26649' => 'shi', 'SHI27347' => 'shi', 'SHI27348' => 'shi', 'SHI33930' => 'shi', 'SHI34220' => 'shi', 'SHI34613' => 'shi', 'SHI34614' => 'shi', 'SHI34630' => 'shi', 'SHI35190' => 'shi', 'SHI35326' => 'shi', 'SHI35334' => 'shi', 'SHI35455' => 'shi', 'SHI35457' => 'shi', 'SHI35980' => 'shi', 'SHI36142' => 'shi', 'SHI36266' => 'shi', 'SHI36368' => 'shi', 'SHI36369' => 'shi', 'SHI36383' => 'shi', 'SHI36567' => 'shi', 'SHI36581' => 'shi', 'SHI36629' => 'shi', 'SHI36771' => 'shi', 'SHI36782' => 'shi', 'SHI36935' => 'shi', 'SHI36966' => 'shi', 'SHI37065' => 'shi', 'SHI37617' => 'shi', 'SHI38206' => 'shi', 'SHI38210' => 'shi', 'SHI38315' => 'shi', 'SHI38566' => 'shi', 'SHI39119' => 'shi', 'SHI39476' => 'shi', 'SHI39477' => 'shi', 'SHI39752' => 'shi', 'SHI39777' => 'shi', 'SHI39812' => 'shi', 'SHI40461' => 'shi', 'SHI40932' => 'shi', 'SHI41240' => 'shi', 'SHI41241' => 'shi', 'SHI42173' => 'shi', 'SHI42503' => 'shi', 'SHI43533' => 'shi', 'SHI43781' => 'shi', 'SHI43970' => 'shi', 'SHI44576' => 'shi', 'SHI44670' => 'shi', 'SHI44671' => 'shi', 'SHI45144' => 'shi', 'SHI45925' => 'shi', 'SHI46090' => 'shi', 'SHI46259' => 'shi', 'SHI46260' => 'shi', 'SHI46908' => 'shi', 'SHI47712' => 'shi', 'SHI48150' => 'shi', 'SHI48307' => 'shi', 'SHI48750' => 'shi', 'SHI48751' => 'shi', 'SHI48902' => 'shi', 'SHI48903' => 'shi', 'SHI49107' => 'shi', 'SHI49108' => 'shi', 'SHI49663' => 'shi', 'SHI49748' => 'shi', 'SHI49794' => 'shi', 'SHI49994' => 'shi', 'SHI50386' => 'shi', 'SHI50512' => 'shi', 'SHI50625' => 'shi', 'SHI50801' => 'shi', 'SHI51105' => 'shi', 'SHI51228' => 'shi', 'SHI51612' => 'shi', 'SHI51658' => 'shi', 'SHI51700' => 'shi', 'SHI52150' => 'shi', 'SHI53045' => 'shi', 'SHI53190' => 'shi', 'SHI53369' => 'shi', 'SHI53372' => 'shi', 'SHI53577' => 'shi', 'SHI53781' => 'shi', 'SHI54131' => 'shi', 'SHI54160' => 'shi', 'SHI54219' => 'shi', 'SHI54388' => 'shi', 'SMO116G0334' => 'smo', 'SMO310G0002' => 'smo', 'SMO364G0929' => 'smo', 'Solyc00g500115.1' => 'sly', 'Solyc00g500225.1' => 'sly', 'Solyc00g500261.1' => 'sly', 'Solyc00g500361.1' => 'sly', 'Sopen00g002640' => 'spe', 'TAR365G0238' => 'tar', 'TAR636G2145' => 'tar', 'TPR.G36985' => 'tpr', 'TPR.G37274' => 'tpr', 'TWI32G1151' => 'twi', 'unitig_87.g28032' => 'ugi', 'unitig_91.g26487' => 'ugi', 'unitig_91.g26518' => 'ugi', 'VMungo0464G0583' => 'vmu', 'VMungo0580G0002' => 'vmu', 'VMungo1309G2626' => 'vmu' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001325', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001325' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001325', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '474', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001325' ) ), 'genes' => array( 'Aa31csc239G10' => 'aar', 'Aa31csc464G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1250' => 'aag', 'Ah.10g028160' => 'amhyb', 'AL3G44430' => 'aly', 'AL3G44440' => 'aly', 'Aqoxy12s029' => 'aox', 'Aqoxy12s039' => 'aox', 'Aqoxy4G02026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TB2XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2YD7KU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LX9HH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6K92H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALHF99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D81V2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGV151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5DDSF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5HWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IEGY60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN64LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX3NGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJZL7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8C5RR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7VYQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPY4ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XXM48B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY6KWR' => 'arhy', 'AT2G07675' => 'ath', 'AT2G07751' => 'ath', 'ATCG00905' => 'ath', 'ATCG01230' => 'ath', 'ATMG00980' => 'ath', 'ATMG00990' => 'ath', 'ATR1169G002' => 'atr', 'Atru.chr3.4001' => 'acertr', 'Atru.chr4.739' => 'acertr', 'Atru.chr6.700' => 'acertr', 'BcaC05g26888' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_234p00060' => 'bna', 'BolC2t10588H' => 'bol', 'BolSC28t60355H' => 'bol', 'BolSC28t60356H' => 'bol', 'BolSC29t60558H' => 'bol', 'BolSC29t60626H' => 'bol', 'BolSC35t60681H' => 'bol', 'BolSC35t60716H' => 'bol', 'BolSC37t60786H' => 'bol', 'BolSC45t60898H' => 'bol', 'BolSC45t60921H' => 'bol', 'BolSC47t61057H' => 'bol', 'BolSC47t61069H' => 'bol', 'BolSC49t61131H' => 'bol', 'BolSC49t61154H' => 'bol', 'BraSC103t45495Z' => 'bra', 'BraSC138t45523Z' => 'bra', 'BraSC143t45667Z' => 'bra', 'BraSC48t46255Z' => 'bra', 'BraSC48t46256Z' => 'bra', 'BraSC58t46451Z' => 'bra', 'BraSC59t46512Z' => 'bra', 'BraSC59t46559Z' => 'bra', 'BraSC77t46664Z' => 'bra', 'BraSC77t46665Z' => 'bra', 'C06p21310' => 'bna', 'C06p23120' => 'bna', 'C09p24710' => 'bna', 'CAN.G1741.3' => 'can', 'CAN.G266.7' => 'can', 'CAN.G351.18' => 'can', 'CAN.G889.5' => 'can', 'CANSAT25G2613' => 'cansat', 'CARHR282350' => 'chi', 'CARHR283240' => 'chi', 'CARHR283250' => 'chi', 'CARHR287250' => 'chi', 'CDE02G1246' => 'cde', 'CDE02G2710' => 'cde', 'CiPaw.08G042500' => 'cil', 'CiPaw.08G172200' => 'cil', 'CiPaw.08G173300' => 'cil', 'ClCG00G001510' => 'cla', 'COL.COLO4_01630' => 'col', 'COL.COLO4_02562' => 'col', 'COL.COLO4_03024' => 'col', 'COL.COLO4_03981' => 'col', 'COL.COLO4_04481' => 'col', 'Cpa.g.sc87.115' => 'cpa', 'Cre02.g144400' => 'cre', 'Cre08.g378900' => 'cre', 'CsaV3_1G007720' => 'csa', 'CsaV3_UNG208560' => 'csa', 'CsaV3_UNG210040' => 'csa', 'CSS0016656' => 'camsi', 'CSS0035753' => 'camsi', 'DCAR_016146' => 'dca', 'DCAR_032435' => 'dca', 'DCAR_032436' => 'dca', 'Duzib132G0580' => 'dzi', 'EL10Ac9g21012' => 'bvu', 'EL10As15g24102' => 'bvu', 'EL10As6g23662' => 'bvu', 'Eucgr.E00717' => 'egr', 'Eucgr.H01184' => 'egr', 'Eucgr.H03985' => 'egr', 'Eucgr.K01909' => 'egr', 'Eucgr.L01873' => 'egr', 'FAN03G1410' => 'fan', 'FAN06G1419' => 'fan', 'FAN06G2328' => 'fan', 'FAN08G2386' => 'fan', 'FAN10G4039' => 'fan', 'FAN13G1785' => 'fan', 'FAN18G4430' => 'fan', 'FAN21G0802' => 'fan', 'FvH4_5g00530' => 'fve', 'FvH4_7g21740' => 'fve', 'FvH4_c3g00110' => 'fve', 'Gohir.1Z050302' => 'ghi', 'Gohir.A01G071550' => 'ghi', 'Gohir.A01G143838' => 'ghi', 'Gohir.A02G100900' => 'ghi', 'Gohir.A03G020550' => 'ghi', 'Gohir.A03G089701' => 'ghi', 'Gohir.A03G116614' => 'ghi', 'Gohir.A04G039361' => 'ghi', 'Gohir.A04G061885' => 'ghi', 'Gohir.A04G062885' => 'ghi', 'Gohir.A05G323772' => 'ghi', 'Gohir.A08G093662' => 'ghi', 'Gohir.A08G123750' => 'ghi', 'Gohir.A09G045600' => 'ghi', 'Gohir.A09G045746' => 'ghi', 'Gohir.A09G103232' => 'ghi', 'Gohir.A09G107601' => 'ghi', 'Gohir.A11G179832' => 'ghi', 'Gohir.A11G179998' => 'ghi', 'Gohir.A11G295125' => 'ghi', 'Gohir.A13G086470' => 'ghi', 'Gohir.D01G137751' => 'ghi', 'Gohir.D02G090033' => 'ghi', 'Gohir.D02G117554' => 'ghi', 'Gohir.D04G096628' => 'ghi', 'Gohir.D08G108608' => 'ghi', 'Gohir.D10G177500' => 'ghi', 'Gohir.D10G181800' => 'ghi', 'Gohir.D10G245316' => 'ghi', 'Gohir.D12G017000' => 'ghi', 'Gorai.004G116100' => 'gra', 'Gorai.005G077900' => 'gra', 'Gorai.005G100800' => 'gra', 'Gorai.005G170800' => 'gra', 'Gorai.008G017300' => 'gra', 'Gorai.011G198300' => 'gra', 'Gorai.011G203400' => 'gra', 'Gorai.011G282800' => 'gra', 'Gorai.012G049000' => 'gra', 'GSVIVG01002752001' => 'vvi', 'HanXRQChr00c0055g0571461' => 'han', 'HanXRQChr01g0009331' => 'han', 'HanXRQChr01g0017121' => 'han', 'HanXRQChr01g0027141' => 'han', 'HanXRQChr08g0224261' => 'han', 'HanXRQChr08g0236211' => 'han', 'HanXRQChr10g0297181' => 'han', 'HanXRQChr10g0305211' => 'han', 'HanXRQChr12g0367961' => 'han', 'HanXRQChr12g0367971' => 'han', 'HanXRQChr12g0370991' => 'han', 'HanXRQChr15g0488691' => 'han', 'HanXRQChr16g0504411' => 'han', 'HanXRQCPg0580291' => 'han', 'HanXRQCPg0580431' => 'han', 'HanXRQMTg0579641' => 'han', 'Haze_27062' => 'cav', 'Hma1.2p1_1244F.1_g270080' => 'hma', 'Hund07989' => 'sun', 'Hund08791' => 'sun', 'Hund20482' => 'sun', 'Hund22781' => 'sun', 'Hund23966' => 'sun', 'Hund27587' => 'sun', 'Hund27634' => 'sun', 'Hund27666' => 'sun', 'Hund27817' => 'sun', 'Hund27899' => 'sun', 'Hund27922' => 'sun', 'Hund28083' => 'sun', 'Hund28867' => 'sun', 'Hund28882' => 'sun', 'Hund28936' => 'sun', 'Hund28943' => 'sun', 'Hund28948' => 'sun', 'Hund28957' => 'sun', 'Hund28958' => 'sun', 'Hund28972' => 'sun', 'Hund28982' => 'sun', 'Hund29029' => 'sun', 'Hund29085' => 'sun', 'Hund29092' => 'sun', 'Hund29106' => 'sun', 'Hund29117' => 'sun', 'Hund29471' => 'sun', 'Hund29893' => 'sun', 'Hund30457' => 'sun', 'Hund30653' => 'sun', 'Hund30764' => 'sun', 'Hund30783' => 'sun', 'Hund30784' => 'sun', 'Hund30785' => 'sun', 'Hund30802' => 'sun', 'Hund30819' => 'sun', 'Hund30820' => 'sun', 'Hund30821' => 'sun', 'Hund30822' => 'sun', 'Hund30823' => 'sun', 'Hund30824' => 'sun', 'Hund30825' => 'sun', 'Hund30826' => 'sun', 'Hund30827' => 'sun', 'Hund30828' => 'sun', 'Hund30829' => 'sun', 'Hund30830' => 'sun', 'Hund30831' => 'sun', 'Hund30832' => 'sun', 'Hund30833' => 'sun', 'Hund30837' => 'sun', 'Hund30843' => 'sun', 'Hund30846' => 'sun', 'Hund30919' => 'sun', 'Hund30957' => 'sun', 'Hund30987' => 'sun', 'Hund30988' => 'sun', 'Hund31006' => 'sun', 'Hund31036' => 'sun', 'Hund31039' => 'sun', 'Hund31051' => 'sun', 'Hund31105' => 'sun', 'Lalb_Chr00c24g0406961' => 'lal', 'Lalb_Chr00c24g0406971' => 'lal', 'Lalb_Chr03g0038861' => 'lal', 'Lalb_Chr03g0038871' => 'lal', 'Lalb_Chr17g0337391' => 'lal', 'Lalb_Chr17g0337401' => 'lal', 'Lj2A1221T109' => 'lonja', 'LjContig00315g0013534' => 'lja', 'LjContig00315g0018892' => 'lja', 'Lsat_1_v5_gn_1_24001' => 'lsa', 'Lsat_1_v5_gn_1_95121' => 'lsa', 'Lsat_1_v5_gn_2_20620' => 'lsa', 'Lsat_1_v5_gn_4_116900' => 'lsa', 'Lsat_1_v5_gn_5_16521' => 'lsa', 'Lsat_1_v5_gn_5_16541' => 'lsa', 'Lsat_1_v5_gn_6_106840' => 'lsa', 'Lsat_1_v5_gn_7_341' => 'lsa', 'Lsat_1_v5_gn_8_97380' => 'lsa', 'Manes.06G021801' => 'mes', 'Manes.08G083670' => 'mes', 'Manes.09G011803' => 'mes', 'Mapoly0163s0017' => 'mpo', 'MBI05_g23316_MAGBIO' => 'mbi', 'MBI07_g03189_MAGBIO' => 'mbi', 'MBI08_g48230_MAGBIO' => 'mbi', 'MBI10_g41320_MAGBIO' => 'mbi', 'MBI10_g41321_MAGBIO' => 'mbi', 'MD05G1172200' => 'mdo', 'MD16G1012400' => 'mdo', 'Medtr0002s0280' => 'mtr', 'Medtr0082s0040' => 'mtr', 'Medtr0625s0020' => 'mtr', 'Medtr2g040140' => 'mtr', 'Medtr7g055840' => 'mtr', 'Medtr7g055910' => 'mtr', 'MELO3C000106.2' => 'cme', 'MELO3C003986.2' => 'cme', 'Migut.F01472' => 'egut', 'MSTRG.3525' => 'ama', 'MSTRG.3526' => 'ama', 'Nitab4.5_0000172g0450' => 'nta', 'Nitab4.5_0000172g0980' => 'nta', 'Nitab4.5_0000172g1180' => 'nta', 'Nitab4.5_0000172g1710' => 'nta', 'Nitab4.5_0000349g0200' => 'nta', 'Nitab4.5_0000692g0250' => 'nta', 'Nitab4.5_0000844g0170' => 'nta', 'Nitab4.5_0000844g0210' => 'nta', 'Nitab4.5_0000844g0260' => 'nta', 'Nitab4.5_0001170g0090' => 'nta', 'Nitab4.5_0001170g0100' => 'nta', 'Nitab4.5_0001348g0140' => 'nta', 'Nitab4.5_0001770g0040' => 'nta', 'Nitab4.5_0001770g0050' => 'nta', 'Nitab4.5_0001770g0060' => 'nta', 'Nitab4.5_0001788g0290' => 'nta', 'Nitab4.5_0001788g0300' => 'nta', 'Nitab4.5_0001788g0340' => 'nta', 'Nitab4.5_0001796g0230' => 'nta', 'Nitab4.5_0001796g0270' => 'nta', 'Nitab4.5_0002347g0060' => 'nta', 'Nitab4.5_0002716g0110' => 'nta', 'Nitab4.5_0003382g0070' => 'nta', 'Nitab4.5_0003713g0020' => 'nta', 'Nitab4.5_0004137g0060' => 'nta', 'Nitab4.5_0004721g0050' => 'nta', 'Nitab4.5_0005853g0070' => 'nta', 'Nitab4.5_0005853g0080' => 'nta', 'Nitab4.5_0006683g0140' => 'nta', 'Nitab4.5_0008835g0060' => 'nta', 'Nitab4.5_0009421g0030' => 'nta', 'Nitab4.5_0012234g0060' => 'nta', 'Nitab4.5_0016174g0030' => 'nta', 'Oeu002614.1' => 'oeu', 'Oeu038563.1' => 'oeu', 'Oeu040255.1' => 'oeu', 'Os12g0423142' => 'osa', 'Peaxi162Scf00001g04024' => 'pax', 'Peaxi162Scf00002g00218' => 'pax', 'Peaxi162Scf00489g00021' => 'pax', 'Peaxi162Scf00588g00111' => 'pax', 'PGR028G0006' => 'pgr', 'PGR028G0020' => 'pgr', 'PGR031G1129' => 'pgr', 'PGSC0003DMG400004141' => 'stu', 'PGSC0003DMG400021744' => 'stu', 'PGSC0003DMG400029876' => 'stu', 'Phvul.009G090248' => 'pvu', 'Potri.007G062001' => 'ptr', 'Potri.008G208300' => 'ptr', 'Pp3c21_8460' => 'ppa', 'Prupe.6G146800' => 'ppe', 'Psat0s4951g0160' => 'psa', 'PSO017G6547' => 'pso', 'PSO170G5129' => 'pso', 'PSO357G0201' => 'pso', 'PSO384G1460' => 'pso', 'QL93p0823_0004' => 'qlo', 'RcHm_v2.0_Chr5g0080691' => 'rch', 'RcHm_v2.0_Chr7g0201871' => 'rch', 'RcHm_v2.0_MTg0498381' => 'rch', 'RcHm_v2.0_MTg0498391' => 'rch', 'RhsimPtG0002900' => 'rsi', 'SabraMtG0001800' => 'sbr', 'SalBow1G0875' => 'sbo', 'SalBow1G2962' => 'sbo', 'SalBow1G5537' => 'sbo', 'SalBow1G5748' => 'sbo', 'SalBow1G6489' => 'sbo', 'SalBow1G6915' => 'sbo', 'SalBow1G7521' => 'sbo', 'SalBow2G0293' => 'sbo', 'Sc03g0005010' => 'sci', 'Sc04g0005510' => 'sci', 'Sc04g0005520' => 'sci', 'Sc16g0005190' => 'sci', 'Sc25g0005880' => 'sci', 'Sed0003644' => 'sed', 'Sed0019436' => 'sed', 'Sed0022288' => 'sed', 'Sed0024579' => 'sed', 'SEGI_23966' => 'sgi', 'SGA_v2.0_scaffold140G35498' => 'sas', 'SGA_v2.0_scaffold255G45400' => 'sas', 'SGA_v2.0_scaffold255G45513' => 'sas', 'SGA_v2.0_scaffold893G53704' => 'sas', 'SHI00829' => 'shi', 'SHI15029' => 'shi', 'SHI26649' => 'shi', 'SHI27347' => 'shi', 'SHI27348' => 'shi', 'SHI33930' => 'shi', 'SHI34220' => 'shi', 'SHI34613' => 'shi', 'SHI34614' => 'shi', 'SHI34630' => 'shi', 'SHI35190' => 'shi', 'SHI35326' => 'shi', 'SHI35334' => 'shi', 'SHI35455' => 'shi', 'SHI35457' => 'shi', 'SHI35980' => 'shi', 'SHI36142' => 'shi', 'SHI36266' => 'shi', 'SHI36368' => 'shi', 'SHI36369' => 'shi', 'SHI36383' => 'shi', 'SHI36567' => 'shi', 'SHI36581' => 'shi', 'SHI36629' => 'shi', 'SHI36771' => 'shi', 'SHI36782' => 'shi', 'SHI36935' => 'shi', 'SHI36966' => 'shi', 'SHI37065' => 'shi', 'SHI37617' => 'shi', 'SHI38206' => 'shi', 'SHI38210' => 'shi', 'SHI38315' => 'shi', 'SHI38566' => 'shi', 'SHI39119' => 'shi', 'SHI39476' => 'shi', 'SHI39477' => 'shi', 'SHI39752' => 'shi', 'SHI39777' => 'shi', 'SHI39812' => 'shi', 'SHI40461' => 'shi', 'SHI40932' => 'shi', 'SHI41240' => 'shi', 'SHI41241' => 'shi', 'SHI42173' => 'shi', 'SHI42503' => 'shi', 'SHI43533' => 'shi', 'SHI43781' => 'shi', 'SHI43970' => 'shi', 'SHI44576' => 'shi', 'SHI44670' => 'shi', 'SHI44671' => 'shi', 'SHI45144' => 'shi', 'SHI45925' => 'shi', 'SHI46090' => 'shi', 'SHI46259' => 'shi', 'SHI46260' => 'shi', 'SHI46908' => 'shi', 'SHI47712' => 'shi', 'SHI48150' => 'shi', 'SHI48307' => 'shi', 'SHI48750' => 'shi', 'SHI48751' => 'shi', 'SHI48902' => 'shi', 'SHI48903' => 'shi', 'SHI49107' => 'shi', 'SHI49108' => 'shi', 'SHI49663' => 'shi', 'SHI49748' => 'shi', 'SHI49794' => 'shi', 'SHI49994' => 'shi', 'SHI50386' => 'shi', 'SHI50512' => 'shi', 'SHI50625' => 'shi', 'SHI50801' => 'shi', 'SHI51105' => 'shi', 'SHI51228' => 'shi', 'SHI51612' => 'shi', 'SHI51658' => 'shi', 'SHI51700' => 'shi', 'SHI52150' => 'shi', 'SHI53045' => 'shi', 'SHI53190' => 'shi', 'SHI53369' => 'shi', 'SHI53372' => 'shi', 'SHI53577' => 'shi', 'SHI53781' => 'shi', 'SHI54131' => 'shi', 'SHI54160' => 'shi', 'SHI54219' => 'shi', 'SHI54388' => 'shi', 'SMO116G0334' => 'smo', 'SMO310G0002' => 'smo', 'SMO364G0929' => 'smo', 'Solyc00g500115.1' => 'sly', 'Solyc00g500225.1' => 'sly', 'Solyc00g500261.1' => 'sly', 'Solyc00g500361.1' => 'sly', 'Sopen00g002640' => 'spe', 'TAR365G0238' => 'tar', 'TAR636G2145' => 'tar', 'TPR.G36985' => 'tpr', 'TPR.G37274' => 'tpr', 'TWI32G1151' => 'twi', 'unitig_87.g28032' => 'ugi', 'unitig_91.g26487' => 'ugi', 'unitig_91.g26518' => 'ugi', 'VMungo0464G0583' => 'vmu', 'VMungo0580G0002' => 'vmu', 'VMungo1309G2626' => 'vmu' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001325' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001325' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001325' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001325' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001325', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '474', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'Aa31csc239G10' => 'aar', 'Aa31csc464G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1250' => 'aag', 'Ah.10g028160' => 'amhyb', 'AL3G44430' => 'aly', 'AL3G44440' => 'aly', 'Aqoxy12s029' => 'aox', 'Aqoxy12s039' => 'aox', 'Aqoxy4G02026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TB2XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2YD7KU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LX9HH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6K92H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALHF99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D81V2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGV151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5DDSF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5HWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IEGY60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN64LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX3NGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJZL7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8C5RR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7VYQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPY4ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XXM48B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY6KWR' => 'arhy', 'AT2G07675' => 'ath', 'AT2G07751' => 'ath', 'ATCG00905' => 'ath', 'ATCG01230' => 'ath', 'ATMG00980' => 'ath', 'ATMG00990' => 'ath', 'ATR1169G002' => 'atr', 'Atru.chr3.4001' => 'acertr', 'Atru.chr4.739' => 'acertr', 'Atru.chr6.700' => 'acertr', 'BcaC05g26888' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_234p00060' => 'bna', 'BolC2t10588H' => 'bol', 'BolSC28t60355H' => 'bol', 'BolSC28t60356H' => 'bol', 'BolSC29t60558H' => 'bol', 'BolSC29t60626H' => 'bol', 'BolSC35t60681H' => 'bol', 'BolSC35t60716H' => 'bol', 'BolSC37t60786H' => 'bol', 'BolSC45t60898H' => 'bol', 'BolSC45t60921H' => 'bol', 'BolSC47t61057H' => 'bol', 'BolSC47t61069H' => 'bol', 'BolSC49t61131H' => 'bol', 'BolSC49t61154H' => 'bol', 'BraSC103t45495Z' => 'bra', 'BraSC138t45523Z' => 'bra', 'BraSC143t45667Z' => 'bra', 'BraSC48t46255Z' => 'bra', 'BraSC48t46256Z' => 'bra', 'BraSC58t46451Z' => 'bra', 'BraSC59t46512Z' => 'bra', 'BraSC59t46559Z' => 'bra', 'BraSC77t46664Z' => 'bra', 'BraSC77t46665Z' => 'bra', 'C06p21310' => 'bna', 'C06p23120' => 'bna', 'C09p24710' => 'bna', 'CAN.G1741.3' => 'can', 'CAN.G266.7' => 'can', 'CAN.G351.18' => 'can', 'CAN.G889.5' => 'can', 'CANSAT25G2613' => 'cansat', 'CARHR282350' => 'chi', 'CARHR283240' => 'chi', 'CARHR283250' => 'chi', 'CARHR287250' => 'chi', 'CDE02G1246' => 'cde', 'CDE02G2710' => 'cde', 'CiPaw.08G042500' => 'cil', 'CiPaw.08G172200' => 'cil', 'CiPaw.08G173300' => 'cil', 'ClCG00G001510' => 'cla', 'COL.COLO4_01630' => 'col', 'COL.COLO4_02562' => 'col', 'COL.COLO4_03024' => 'col', 'COL.COLO4_03981' => 'col', 'COL.COLO4_04481' => 'col', 'Cpa.g.sc87.115' => 'cpa', 'Cre02.g144400' => 'cre', 'Cre08.g378900' => 'cre', 'CsaV3_1G007720' => 'csa', 'CsaV3_UNG208560' => 'csa', 'CsaV3_UNG210040' => 'csa', 'CSS0016656' => 'camsi', 'CSS0035753' => 'camsi', 'DCAR_016146' => 'dca', 'DCAR_032435' => 'dca', 'DCAR_032436' => 'dca', 'Duzib132G0580' => 'dzi', 'EL10Ac9g21012' => 'bvu', 'EL10As15g24102' => 'bvu', 'EL10As6g23662' => 'bvu', 'Eucgr.E00717' => 'egr', 'Eucgr.H01184' => 'egr', 'Eucgr.H03985' => 'egr', 'Eucgr.K01909' => 'egr', 'Eucgr.L01873' => 'egr', 'FAN03G1410' => 'fan', 'FAN06G1419' => 'fan', 'FAN06G2328' => 'fan', 'FAN08G2386' => 'fan', 'FAN10G4039' => 'fan', 'FAN13G1785' => 'fan', 'FAN18G4430' => 'fan', 'FAN21G0802' => 'fan', 'FvH4_5g00530' => 'fve', 'FvH4_7g21740' => 'fve', 'FvH4_c3g00110' => 'fve', 'Gohir.1Z050302' => 'ghi', 'Gohir.A01G071550' => 'ghi', 'Gohir.A01G143838' => 'ghi', 'Gohir.A02G100900' => 'ghi', 'Gohir.A03G020550' => 'ghi', 'Gohir.A03G089701' => 'ghi', 'Gohir.A03G116614' => 'ghi', 'Gohir.A04G039361' => 'ghi', 'Gohir.A04G061885' => 'ghi', 'Gohir.A04G062885' => 'ghi', 'Gohir.A05G323772' => 'ghi', 'Gohir.A08G093662' => 'ghi', 'Gohir.A08G123750' => 'ghi', 'Gohir.A09G045600' => 'ghi', 'Gohir.A09G045746' => 'ghi', 'Gohir.A09G103232' => 'ghi', 'Gohir.A09G107601' => 'ghi', 'Gohir.A11G179832' => 'ghi', 'Gohir.A11G179998' => 'ghi', 'Gohir.A11G295125' => 'ghi', 'Gohir.A13G086470' => 'ghi', 'Gohir.D01G137751' => 'ghi', 'Gohir.D02G090033' => 'ghi', 'Gohir.D02G117554' => 'ghi', 'Gohir.D04G096628' => 'ghi', 'Gohir.D08G108608' => 'ghi', 'Gohir.D10G177500' => 'ghi', 'Gohir.D10G181800' => 'ghi', 'Gohir.D10G245316' => 'ghi', 'Gohir.D12G017000' => 'ghi', 'Gorai.004G116100' => 'gra', 'Gorai.005G077900' => 'gra', 'Gorai.005G100800' => 'gra', 'Gorai.005G170800' => 'gra', 'Gorai.008G017300' => 'gra', 'Gorai.011G198300' => 'gra', 'Gorai.011G203400' => 'gra', 'Gorai.011G282800' => 'gra', 'Gorai.012G049000' => 'gra', 'GSVIVG01002752001' => 'vvi', 'HanXRQChr00c0055g0571461' => 'han', 'HanXRQChr01g0009331' => 'han', 'HanXRQChr01g0017121' => 'han', 'HanXRQChr01g0027141' => 'han', 'HanXRQChr08g0224261' => 'han', 'HanXRQChr08g0236211' => 'han', 'HanXRQChr10g0297181' => 'han', 'HanXRQChr10g0305211' => 'han', 'HanXRQChr12g0367961' => 'han', 'HanXRQChr12g0367971' => 'han', 'HanXRQChr12g0370991' => 'han', 'HanXRQChr15g0488691' => 'han', 'HanXRQChr16g0504411' => 'han', 'HanXRQCPg0580291' => 'han', 'HanXRQCPg0580431' => 'han', 'HanXRQMTg0579641' => 'han', 'Haze_27062' => 'cav', 'Hma1.2p1_1244F.1_g270080' => 'hma', 'Hund07989' => 'sun', 'Hund08791' => 'sun', 'Hund20482' => 'sun', 'Hund22781' => 'sun', 'Hund23966' => 'sun', 'Hund27587' => 'sun', 'Hund27634' => 'sun', 'Hund27666' => 'sun', 'Hund27817' => 'sun', 'Hund27899' => 'sun', 'Hund27922' => 'sun', 'Hund28083' => 'sun', 'Hund28867' => 'sun', 'Hund28882' => 'sun', 'Hund28936' => 'sun', 'Hund28943' => 'sun', 'Hund28948' => 'sun', 'Hund28957' => 'sun', 'Hund28958' => 'sun', 'Hund28972' => 'sun', 'Hund28982' => 'sun', 'Hund29029' => 'sun', 'Hund29085' => 'sun', 'Hund29092' => 'sun', 'Hund29106' => 'sun', 'Hund29117' => 'sun', 'Hund29471' => 'sun', 'Hund29893' => 'sun', 'Hund30457' => 'sun', 'Hund30653' => 'sun', 'Hund30764' => 'sun', 'Hund30783' => 'sun', 'Hund30784' => 'sun', 'Hund30785' => 'sun', 'Hund30802' => 'sun', 'Hund30819' => 'sun', 'Hund30820' => 'sun', 'Hund30821' => 'sun', 'Hund30822' => 'sun', 'Hund30823' => 'sun', 'Hund30824' => 'sun', 'Hund30825' => 'sun', 'Hund30826' => 'sun', 'Hund30827' => 'sun', 'Hund30828' => 'sun', 'Hund30829' => 'sun', 'Hund30830' => 'sun', 'Hund30831' => 'sun', 'Hund30832' => 'sun', 'Hund30833' => 'sun', 'Hund30837' => 'sun', 'Hund30843' => 'sun', 'Hund30846' => 'sun', 'Hund30919' => 'sun', 'Hund30957' => 'sun', 'Hund30987' => 'sun', 'Hund30988' => 'sun', 'Hund31006' => 'sun', 'Hund31036' => 'sun', 'Hund31039' => 'sun', 'Hund31051' => 'sun', 'Hund31105' => 'sun', 'Lalb_Chr00c24g0406961' => 'lal', 'Lalb_Chr00c24g0406971' => 'lal', 'Lalb_Chr03g0038861' => 'lal', 'Lalb_Chr03g0038871' => 'lal', 'Lalb_Chr17g0337391' => 'lal', 'Lalb_Chr17g0337401' => 'lal', 'Lj2A1221T109' => 'lonja', 'LjContig00315g0013534' => 'lja', 'LjContig00315g0018892' => 'lja', 'Lsat_1_v5_gn_1_24001' => 'lsa', 'Lsat_1_v5_gn_1_95121' => 'lsa', 'Lsat_1_v5_gn_2_20620' => 'lsa', 'Lsat_1_v5_gn_4_116900' => 'lsa', 'Lsat_1_v5_gn_5_16521' => 'lsa', 'Lsat_1_v5_gn_5_16541' => 'lsa', 'Lsat_1_v5_gn_6_106840' => 'lsa', 'Lsat_1_v5_gn_7_341' => 'lsa', 'Lsat_1_v5_gn_8_97380' => 'lsa', 'Manes.06G021801' => 'mes', 'Manes.08G083670' => 'mes', 'Manes.09G011803' => 'mes', 'Mapoly0163s0017' => 'mpo', 'MBI05_g23316_MAGBIO' => 'mbi', 'MBI07_g03189_MAGBIO' => 'mbi', 'MBI08_g48230_MAGBIO' => 'mbi', 'MBI10_g41320_MAGBIO' => 'mbi', 'MBI10_g41321_MAGBIO' => 'mbi', 'MD05G1172200' => 'mdo', 'MD16G1012400' => 'mdo', 'Medtr0002s0280' => 'mtr', 'Medtr0082s0040' => 'mtr', 'Medtr0625s0020' => 'mtr', 'Medtr2g040140' => 'mtr', 'Medtr7g055840' => 'mtr', 'Medtr7g055910' => 'mtr', 'MELO3C000106.2' => 'cme', 'MELO3C003986.2' => 'cme', 'Migut.F01472' => 'egut', 'MSTRG.3525' => 'ama', 'MSTRG.3526' => 'ama', 'Nitab4.5_0000172g0450' => 'nta', 'Nitab4.5_0000172g0980' => 'nta', 'Nitab4.5_0000172g1180' => 'nta', 'Nitab4.5_0000172g1710' => 'nta', 'Nitab4.5_0000349g0200' => 'nta', 'Nitab4.5_0000692g0250' => 'nta', 'Nitab4.5_0000844g0170' => 'nta', 'Nitab4.5_0000844g0210' => 'nta', 'Nitab4.5_0000844g0260' => 'nta', 'Nitab4.5_0001170g0090' => 'nta', 'Nitab4.5_0001170g0100' => 'nta', 'Nitab4.5_0001348g0140' => 'nta', 'Nitab4.5_0001770g0040' => 'nta', 'Nitab4.5_0001770g0050' => 'nta', 'Nitab4.5_0001770g0060' => 'nta', 'Nitab4.5_0001788g0290' => 'nta', 'Nitab4.5_0001788g0300' => 'nta', 'Nitab4.5_0001788g0340' => 'nta', 'Nitab4.5_0001796g0230' => 'nta', 'Nitab4.5_0001796g0270' => 'nta', 'Nitab4.5_0002347g0060' => 'nta', 'Nitab4.5_0002716g0110' => 'nta', 'Nitab4.5_0003382g0070' => 'nta', 'Nitab4.5_0003713g0020' => 'nta', 'Nitab4.5_0004137g0060' => 'nta', 'Nitab4.5_0004721g0050' => 'nta', 'Nitab4.5_0005853g0070' => 'nta', 'Nitab4.5_0005853g0080' => 'nta', 'Nitab4.5_0006683g0140' => 'nta', 'Nitab4.5_0008835g0060' => 'nta', 'Nitab4.5_0009421g0030' => 'nta', 'Nitab4.5_0012234g0060' => 'nta', 'Nitab4.5_0016174g0030' => 'nta', 'Oeu002614.1' => 'oeu', 'Oeu038563.1' => 'oeu', 'Oeu040255.1' => 'oeu', 'Os12g0423142' => 'osa', 'Peaxi162Scf00001g04024' => 'pax', 'Peaxi162Scf00002g00218' => 'pax', 'Peaxi162Scf00489g00021' => 'pax', 'Peaxi162Scf00588g00111' => 'pax', 'PGR028G0006' => 'pgr', 'PGR028G0020' => 'pgr', 'PGR031G1129' => 'pgr', 'PGSC0003DMG400004141' => 'stu', 'PGSC0003DMG400021744' => 'stu', 'PGSC0003DMG400029876' => 'stu', 'Phvul.009G090248' => 'pvu', 'Potri.007G062001' => 'ptr', 'Potri.008G208300' => 'ptr', 'Pp3c21_8460' => 'ppa', 'Prupe.6G146800' => 'ppe', 'Psat0s4951g0160' => 'psa', 'PSO017G6547' => 'pso', 'PSO170G5129' => 'pso', 'PSO357G0201' => 'pso', 'PSO384G1460' => 'pso', 'QL93p0823_0004' => 'qlo', 'RcHm_v2.0_Chr5g0080691' => 'rch', 'RcHm_v2.0_Chr7g0201871' => 'rch', 'RcHm_v2.0_MTg0498381' => 'rch', 'RcHm_v2.0_MTg0498391' => 'rch', 'RhsimPtG0002900' => 'rsi', 'SabraMtG0001800' => 'sbr', 'SalBow1G0875' => 'sbo', 'SalBow1G2962' => 'sbo', 'SalBow1G5537' => 'sbo', 'SalBow1G5748' => 'sbo', 'SalBow1G6489' => 'sbo', 'SalBow1G6915' => 'sbo', 'SalBow1G7521' => 'sbo', 'SalBow2G0293' => 'sbo', 'Sc03g0005010' => 'sci', 'Sc04g0005510' => 'sci', 'Sc04g0005520' => 'sci', 'Sc16g0005190' => 'sci', 'Sc25g0005880' => 'sci', 'Sed0003644' => 'sed', 'Sed0019436' => 'sed', 'Sed0022288' => 'sed', 'Sed0024579' => 'sed', 'SEGI_23966' => 'sgi', 'SGA_v2.0_scaffold140G35498' => 'sas', 'SGA_v2.0_scaffold255G45400' => 'sas', 'SGA_v2.0_scaffold255G45513' => 'sas', 'SGA_v2.0_scaffold893G53704' => 'sas', 'SHI00829' => 'shi', 'SHI15029' => 'shi', 'SHI26649' => 'shi', 'SHI27347' => 'shi', 'SHI27348' => 'shi', 'SHI33930' => 'shi', 'SHI34220' => 'shi', 'SHI34613' => 'shi', 'SHI34614' => 'shi', 'SHI34630' => 'shi', 'SHI35190' => 'shi', 'SHI35326' => 'shi', 'SHI35334' => 'shi', 'SHI35455' => 'shi', 'SHI35457' => 'shi', 'SHI35980' => 'shi', 'SHI36142' => 'shi', 'SHI36266' => 'shi', 'SHI36368' => 'shi', 'SHI36369' => 'shi', 'SHI36383' => 'shi', 'SHI36567' => 'shi', 'SHI36581' => 'shi', 'SHI36629' => 'shi', 'SHI36771' => 'shi', 'SHI36782' => 'shi', 'SHI36935' => 'shi', 'SHI36966' => 'shi', 'SHI37065' => 'shi', 'SHI37617' => 'shi', 'SHI38206' => 'shi', 'SHI38210' => 'shi', 'SHI38315' => 'shi', 'SHI38566' => 'shi', 'SHI39119' => 'shi', 'SHI39476' => 'shi', 'SHI39477' => 'shi', 'SHI39752' => 'shi', 'SHI39777' => 'shi', 'SHI39812' => 'shi', 'SHI40461' => 'shi', 'SHI40932' => 'shi', 'SHI41240' => 'shi', 'SHI41241' => 'shi', 'SHI42173' => 'shi', 'SHI42503' => 'shi', 'SHI43533' => 'shi', 'SHI43781' => 'shi', 'SHI43970' => 'shi', 'SHI44576' => 'shi', 'SHI44670' => 'shi', 'SHI44671' => 'shi', 'SHI45144' => 'shi', 'SHI45925' => 'shi', 'SHI46090' => 'shi', 'SHI46259' => 'shi', 'SHI46260' => 'shi', 'SHI46908' => 'shi', 'SHI47712' => 'shi', 'SHI48150' => 'shi', 'SHI48307' => 'shi', 'SHI48750' => 'shi', 'SHI48751' => 'shi', 'SHI48902' => 'shi', 'SHI48903' => 'shi', 'SHI49107' => 'shi', 'SHI49108' => 'shi', 'SHI49663' => 'shi', 'SHI49748' => 'shi', 'SHI49794' => 'shi', 'SHI49994' => 'shi', 'SHI50386' => 'shi', 'SHI50512' => 'shi', 'SHI50625' => 'shi', 'SHI50801' => 'shi', 'SHI51105' => 'shi', 'SHI51228' => 'shi', 'SHI51612' => 'shi', 'SHI51658' => 'shi', 'SHI51700' => 'shi', 'SHI52150' => 'shi', 'SHI53045' => 'shi', 'SHI53190' => 'shi', 'SHI53369' => 'shi', 'SHI53372' => 'shi', 'SHI53577' => 'shi', 'SHI53781' => 'shi', 'SHI54131' => 'shi', 'SHI54160' => 'shi', 'SHI54219' => 'shi', 'SHI54388' => 'shi', 'SMO116G0334' => 'smo', 'SMO310G0002' => 'smo', 'SMO364G0929' => 'smo', 'Solyc00g500115.1' => 'sly', 'Solyc00g500225.1' => 'sly', 'Solyc00g500261.1' => 'sly', 'Solyc00g500361.1' => 'sly', 'Sopen00g002640' => 'spe', 'TAR365G0238' => 'tar', 'TAR636G2145' => 'tar', 'TPR.G36985' => 'tpr', 'TPR.G37274' => 'tpr', 'TWI32G1151' => 'twi', 'unitig_87.g28032' => 'ugi', 'unitig_91.g26487' => 'ugi', 'unitig_91.g26518' => 'ugi', 'VMungo0464G0583' => 'vmu', 'VMungo0580G0002' => 'vmu', 'VMungo1309G2626' => 'vmu' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001325', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001325' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001325', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '474', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001325' ) ), 'genes' => array( 'Aa31csc239G10' => 'aar', 'Aa31csc464G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1250' => 'aag', 'Ah.10g028160' => 'amhyb', 'AL3G44430' => 'aly', 'AL3G44440' => 'aly', 'Aqoxy12s029' => 'aox', 'Aqoxy12s039' => 'aox', 'Aqoxy4G02026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TB2XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2YD7KU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LX9HH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6K92H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALHF99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D81V2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGV151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5DDSF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5HWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IEGY60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN64LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX3NGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJZL7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8C5RR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7VYQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPY4ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XXM48B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY6KWR' => 'arhy', 'AT2G07675' => 'ath', 'AT2G07751' => 'ath', 'ATCG00905' => 'ath', 'ATCG01230' => 'ath', 'ATMG00980' => 'ath', 'ATMG00990' => 'ath', 'ATR1169G002' => 'atr', 'Atru.chr3.4001' => 'acertr', 'Atru.chr4.739' => 'acertr', 'Atru.chr6.700' => 'acertr', 'BcaC05g26888' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_234p00060' => 'bna', 'BolC2t10588H' => 'bol', 'BolSC28t60355H' => 'bol', 'BolSC28t60356H' => 'bol', 'BolSC29t60558H' => 'bol', 'BolSC29t60626H' => 'bol', 'BolSC35t60681H' => 'bol', 'BolSC35t60716H' => 'bol', 'BolSC37t60786H' => 'bol', 'BolSC45t60898H' => 'bol', 'BolSC45t60921H' => 'bol', 'BolSC47t61057H' => 'bol', 'BolSC47t61069H' => 'bol', 'BolSC49t61131H' => 'bol', 'BolSC49t61154H' => 'bol', 'BraSC103t45495Z' => 'bra', 'BraSC138t45523Z' => 'bra', 'BraSC143t45667Z' => 'bra', 'BraSC48t46255Z' => 'bra', 'BraSC48t46256Z' => 'bra', 'BraSC58t46451Z' => 'bra', 'BraSC59t46512Z' => 'bra', 'BraSC59t46559Z' => 'bra', 'BraSC77t46664Z' => 'bra', 'BraSC77t46665Z' => 'bra', 'C06p21310' => 'bna', 'C06p23120' => 'bna', 'C09p24710' => 'bna', 'CAN.G1741.3' => 'can', 'CAN.G266.7' => 'can', 'CAN.G351.18' => 'can', 'CAN.G889.5' => 'can', 'CANSAT25G2613' => 'cansat', 'CARHR282350' => 'chi', 'CARHR283240' => 'chi', 'CARHR283250' => 'chi', 'CARHR287250' => 'chi', 'CDE02G1246' => 'cde', 'CDE02G2710' => 'cde', 'CiPaw.08G042500' => 'cil', 'CiPaw.08G172200' => 'cil', 'CiPaw.08G173300' => 'cil', 'ClCG00G001510' => 'cla', 'COL.COLO4_01630' => 'col', 'COL.COLO4_02562' => 'col', 'COL.COLO4_03024' => 'col', 'COL.COLO4_03981' => 'col', 'COL.COLO4_04481' => 'col', 'Cpa.g.sc87.115' => 'cpa', 'Cre02.g144400' => 'cre', 'Cre08.g378900' => 'cre', 'CsaV3_1G007720' => 'csa', 'CsaV3_UNG208560' => 'csa', 'CsaV3_UNG210040' => 'csa', 'CSS0016656' => 'camsi', 'CSS0035753' => 'camsi', 'DCAR_016146' => 'dca', 'DCAR_032435' => 'dca', 'DCAR_032436' => 'dca', 'Duzib132G0580' => 'dzi', 'EL10Ac9g21012' => 'bvu', 'EL10As15g24102' => 'bvu', 'EL10As6g23662' => 'bvu', 'Eucgr.E00717' => 'egr', 'Eucgr.H01184' => 'egr', 'Eucgr.H03985' => 'egr', 'Eucgr.K01909' => 'egr', 'Eucgr.L01873' => 'egr', 'FAN03G1410' => 'fan', 'FAN06G1419' => 'fan', 'FAN06G2328' => 'fan', 'FAN08G2386' => 'fan', 'FAN10G4039' => 'fan', 'FAN13G1785' => 'fan', 'FAN18G4430' => 'fan', 'FAN21G0802' => 'fan', 'FvH4_5g00530' => 'fve', 'FvH4_7g21740' => 'fve', 'FvH4_c3g00110' => 'fve', 'Gohir.1Z050302' => 'ghi', 'Gohir.A01G071550' => 'ghi', 'Gohir.A01G143838' => 'ghi', 'Gohir.A02G100900' => 'ghi', 'Gohir.A03G020550' => 'ghi', 'Gohir.A03G089701' => 'ghi', 'Gohir.A03G116614' => 'ghi', 'Gohir.A04G039361' => 'ghi', 'Gohir.A04G061885' => 'ghi', 'Gohir.A04G062885' => 'ghi', 'Gohir.A05G323772' => 'ghi', 'Gohir.A08G093662' => 'ghi', 'Gohir.A08G123750' => 'ghi', 'Gohir.A09G045600' => 'ghi', 'Gohir.A09G045746' => 'ghi', 'Gohir.A09G103232' => 'ghi', 'Gohir.A09G107601' => 'ghi', 'Gohir.A11G179832' => 'ghi', 'Gohir.A11G179998' => 'ghi', 'Gohir.A11G295125' => 'ghi', 'Gohir.A13G086470' => 'ghi', 'Gohir.D01G137751' => 'ghi', 'Gohir.D02G090033' => 'ghi', 'Gohir.D02G117554' => 'ghi', 'Gohir.D04G096628' => 'ghi', 'Gohir.D08G108608' => 'ghi', 'Gohir.D10G177500' => 'ghi', 'Gohir.D10G181800' => 'ghi', 'Gohir.D10G245316' => 'ghi', 'Gohir.D12G017000' => 'ghi', 'Gorai.004G116100' => 'gra', 'Gorai.005G077900' => 'gra', 'Gorai.005G100800' => 'gra', 'Gorai.005G170800' => 'gra', 'Gorai.008G017300' => 'gra', 'Gorai.011G198300' => 'gra', 'Gorai.011G203400' => 'gra', 'Gorai.011G282800' => 'gra', 'Gorai.012G049000' => 'gra', 'GSVIVG01002752001' => 'vvi', 'HanXRQChr00c0055g0571461' => 'han', 'HanXRQChr01g0009331' => 'han', 'HanXRQChr01g0017121' => 'han', 'HanXRQChr01g0027141' => 'han', 'HanXRQChr08g0224261' => 'han', 'HanXRQChr08g0236211' => 'han', 'HanXRQChr10g0297181' => 'han', 'HanXRQChr10g0305211' => 'han', 'HanXRQChr12g0367961' => 'han', 'HanXRQChr12g0367971' => 'han', 'HanXRQChr12g0370991' => 'han', 'HanXRQChr15g0488691' => 'han', 'HanXRQChr16g0504411' => 'han', 'HanXRQCPg0580291' => 'han', 'HanXRQCPg0580431' => 'han', 'HanXRQMTg0579641' => 'han', 'Haze_27062' => 'cav', 'Hma1.2p1_1244F.1_g270080' => 'hma', 'Hund07989' => 'sun', 'Hund08791' => 'sun', 'Hund20482' => 'sun', 'Hund22781' => 'sun', 'Hund23966' => 'sun', 'Hund27587' => 'sun', 'Hund27634' => 'sun', 'Hund27666' => 'sun', 'Hund27817' => 'sun', 'Hund27899' => 'sun', 'Hund27922' => 'sun', 'Hund28083' => 'sun', 'Hund28867' => 'sun', 'Hund28882' => 'sun', 'Hund28936' => 'sun', 'Hund28943' => 'sun', 'Hund28948' => 'sun', 'Hund28957' => 'sun', 'Hund28958' => 'sun', 'Hund28972' => 'sun', 'Hund28982' => 'sun', 'Hund29029' => 'sun', 'Hund29085' => 'sun', 'Hund29092' => 'sun', 'Hund29106' => 'sun', 'Hund29117' => 'sun', 'Hund29471' => 'sun', 'Hund29893' => 'sun', 'Hund30457' => 'sun', 'Hund30653' => 'sun', 'Hund30764' => 'sun', 'Hund30783' => 'sun', 'Hund30784' => 'sun', 'Hund30785' => 'sun', 'Hund30802' => 'sun', 'Hund30819' => 'sun', 'Hund30820' => 'sun', 'Hund30821' => 'sun', 'Hund30822' => 'sun', 'Hund30823' => 'sun', 'Hund30824' => 'sun', 'Hund30825' => 'sun', 'Hund30826' => 'sun', 'Hund30827' => 'sun', 'Hund30828' => 'sun', 'Hund30829' => 'sun', 'Hund30830' => 'sun', 'Hund30831' => 'sun', 'Hund30832' => 'sun', 'Hund30833' => 'sun', 'Hund30837' => 'sun', 'Hund30843' => 'sun', 'Hund30846' => 'sun', 'Hund30919' => 'sun', 'Hund30957' => 'sun', 'Hund30987' => 'sun', 'Hund30988' => 'sun', 'Hund31006' => 'sun', 'Hund31036' => 'sun', 'Hund31039' => 'sun', 'Hund31051' => 'sun', 'Hund31105' => 'sun', 'Lalb_Chr00c24g0406961' => 'lal', 'Lalb_Chr00c24g0406971' => 'lal', 'Lalb_Chr03g0038861' => 'lal', 'Lalb_Chr03g0038871' => 'lal', 'Lalb_Chr17g0337391' => 'lal', 'Lalb_Chr17g0337401' => 'lal', 'Lj2A1221T109' => 'lonja', 'LjContig00315g0013534' => 'lja', 'LjContig00315g0018892' => 'lja', 'Lsat_1_v5_gn_1_24001' => 'lsa', 'Lsat_1_v5_gn_1_95121' => 'lsa', 'Lsat_1_v5_gn_2_20620' => 'lsa', 'Lsat_1_v5_gn_4_116900' => 'lsa', 'Lsat_1_v5_gn_5_16521' => 'lsa', 'Lsat_1_v5_gn_5_16541' => 'lsa', 'Lsat_1_v5_gn_6_106840' => 'lsa', 'Lsat_1_v5_gn_7_341' => 'lsa', 'Lsat_1_v5_gn_8_97380' => 'lsa', 'Manes.06G021801' => 'mes', 'Manes.08G083670' => 'mes', 'Manes.09G011803' => 'mes', 'Mapoly0163s0017' => 'mpo', 'MBI05_g23316_MAGBIO' => 'mbi', 'MBI07_g03189_MAGBIO' => 'mbi', 'MBI08_g48230_MAGBIO' => 'mbi', 'MBI10_g41320_MAGBIO' => 'mbi', 'MBI10_g41321_MAGBIO' => 'mbi', 'MD05G1172200' => 'mdo', 'MD16G1012400' => 'mdo', 'Medtr0002s0280' => 'mtr', 'Medtr0082s0040' => 'mtr', 'Medtr0625s0020' => 'mtr', 'Medtr2g040140' => 'mtr', 'Medtr7g055840' => 'mtr', 'Medtr7g055910' => 'mtr', 'MELO3C000106.2' => 'cme', 'MELO3C003986.2' => 'cme', 'Migut.F01472' => 'egut', 'MSTRG.3525' => 'ama', 'MSTRG.3526' => 'ama', 'Nitab4.5_0000172g0450' => 'nta', 'Nitab4.5_0000172g0980' => 'nta', 'Nitab4.5_0000172g1180' => 'nta', 'Nitab4.5_0000172g1710' => 'nta', 'Nitab4.5_0000349g0200' => 'nta', 'Nitab4.5_0000692g0250' => 'nta', 'Nitab4.5_0000844g0170' => 'nta', 'Nitab4.5_0000844g0210' => 'nta', 'Nitab4.5_0000844g0260' => 'nta', 'Nitab4.5_0001170g0090' => 'nta', 'Nitab4.5_0001170g0100' => 'nta', 'Nitab4.5_0001348g0140' => 'nta', 'Nitab4.5_0001770g0040' => 'nta', 'Nitab4.5_0001770g0050' => 'nta', 'Nitab4.5_0001770g0060' => 'nta', 'Nitab4.5_0001788g0290' => 'nta', 'Nitab4.5_0001788g0300' => 'nta', 'Nitab4.5_0001788g0340' => 'nta', 'Nitab4.5_0001796g0230' => 'nta', 'Nitab4.5_0001796g0270' => 'nta', 'Nitab4.5_0002347g0060' => 'nta', 'Nitab4.5_0002716g0110' => 'nta', 'Nitab4.5_0003382g0070' => 'nta', 'Nitab4.5_0003713g0020' => 'nta', 'Nitab4.5_0004137g0060' => 'nta', 'Nitab4.5_0004721g0050' => 'nta', 'Nitab4.5_0005853g0070' => 'nta', 'Nitab4.5_0005853g0080' => 'nta', 'Nitab4.5_0006683g0140' => 'nta', 'Nitab4.5_0008835g0060' => 'nta', 'Nitab4.5_0009421g0030' => 'nta', 'Nitab4.5_0012234g0060' => 'nta', 'Nitab4.5_0016174g0030' => 'nta', 'Oeu002614.1' => 'oeu', 'Oeu038563.1' => 'oeu', 'Oeu040255.1' => 'oeu', 'Os12g0423142' => 'osa', 'Peaxi162Scf00001g04024' => 'pax', 'Peaxi162Scf00002g00218' => 'pax', 'Peaxi162Scf00489g00021' => 'pax', 'Peaxi162Scf00588g00111' => 'pax', 'PGR028G0006' => 'pgr', 'PGR028G0020' => 'pgr', 'PGR031G1129' => 'pgr', 'PGSC0003DMG400004141' => 'stu', 'PGSC0003DMG400021744' => 'stu', 'PGSC0003DMG400029876' => 'stu', 'Phvul.009G090248' => 'pvu', 'Potri.007G062001' => 'ptr', 'Potri.008G208300' => 'ptr', 'Pp3c21_8460' => 'ppa', 'Prupe.6G146800' => 'ppe', 'Psat0s4951g0160' => 'psa', 'PSO017G6547' => 'pso', 'PSO170G5129' => 'pso', 'PSO357G0201' => 'pso', 'PSO384G1460' => 'pso', 'QL93p0823_0004' => 'qlo', 'RcHm_v2.0_Chr5g0080691' => 'rch', 'RcHm_v2.0_Chr7g0201871' => 'rch', 'RcHm_v2.0_MTg0498381' => 'rch', 'RcHm_v2.0_MTg0498391' => 'rch', 'RhsimPtG0002900' => 'rsi', 'SabraMtG0001800' => 'sbr', 'SalBow1G0875' => 'sbo', 'SalBow1G2962' => 'sbo', 'SalBow1G5537' => 'sbo', 'SalBow1G5748' => 'sbo', 'SalBow1G6489' => 'sbo', 'SalBow1G6915' => 'sbo', 'SalBow1G7521' => 'sbo', 'SalBow2G0293' => 'sbo', 'Sc03g0005010' => 'sci', 'Sc04g0005510' => 'sci', 'Sc04g0005520' => 'sci', 'Sc16g0005190' => 'sci', 'Sc25g0005880' => 'sci', 'Sed0003644' => 'sed', 'Sed0019436' => 'sed', 'Sed0022288' => 'sed', 'Sed0024579' => 'sed', 'SEGI_23966' => 'sgi', 'SGA_v2.0_scaffold140G35498' => 'sas', 'SGA_v2.0_scaffold255G45400' => 'sas', 'SGA_v2.0_scaffold255G45513' => 'sas', 'SGA_v2.0_scaffold893G53704' => 'sas', 'SHI00829' => 'shi', 'SHI15029' => 'shi', 'SHI26649' => 'shi', 'SHI27347' => 'shi', 'SHI27348' => 'shi', 'SHI33930' => 'shi', 'SHI34220' => 'shi', 'SHI34613' => 'shi', 'SHI34614' => 'shi', 'SHI34630' => 'shi', 'SHI35190' => 'shi', 'SHI35326' => 'shi', 'SHI35334' => 'shi', 'SHI35455' => 'shi', 'SHI35457' => 'shi', 'SHI35980' => 'shi', 'SHI36142' => 'shi', 'SHI36266' => 'shi', 'SHI36368' => 'shi', 'SHI36369' => 'shi', 'SHI36383' => 'shi', 'SHI36567' => 'shi', 'SHI36581' => 'shi', 'SHI36629' => 'shi', 'SHI36771' => 'shi', 'SHI36782' => 'shi', 'SHI36935' => 'shi', 'SHI36966' => 'shi', 'SHI37065' => 'shi', 'SHI37617' => 'shi', 'SHI38206' => 'shi', 'SHI38210' => 'shi', 'SHI38315' => 'shi', 'SHI38566' => 'shi', 'SHI39119' => 'shi', 'SHI39476' => 'shi', 'SHI39477' => 'shi', 'SHI39752' => 'shi', 'SHI39777' => 'shi', 'SHI39812' => 'shi', 'SHI40461' => 'shi', 'SHI40932' => 'shi', 'SHI41240' => 'shi', 'SHI41241' => 'shi', 'SHI42173' => 'shi', 'SHI42503' => 'shi', 'SHI43533' => 'shi', 'SHI43781' => 'shi', 'SHI43970' => 'shi', 'SHI44576' => 'shi', 'SHI44670' => 'shi', 'SHI44671' => 'shi', 'SHI45144' => 'shi', 'SHI45925' => 'shi', 'SHI46090' => 'shi', 'SHI46259' => 'shi', 'SHI46260' => 'shi', 'SHI46908' => 'shi', 'SHI47712' => 'shi', 'SHI48150' => 'shi', 'SHI48307' => 'shi', 'SHI48750' => 'shi', 'SHI48751' => 'shi', 'SHI48902' => 'shi', 'SHI48903' => 'shi', 'SHI49107' => 'shi', 'SHI49108' => 'shi', 'SHI49663' => 'shi', 'SHI49748' => 'shi', 'SHI49794' => 'shi', 'SHI49994' => 'shi', 'SHI50386' => 'shi', 'SHI50512' => 'shi', 'SHI50625' => 'shi', 'SHI50801' => 'shi', 'SHI51105' => 'shi', 'SHI51228' => 'shi', 'SHI51612' => 'shi', 'SHI51658' => 'shi', 'SHI51700' => 'shi', 'SHI52150' => 'shi', 'SHI53045' => 'shi', 'SHI53190' => 'shi', 'SHI53369' => 'shi', 'SHI53372' => 'shi', 'SHI53577' => 'shi', 'SHI53781' => 'shi', 'SHI54131' => 'shi', 'SHI54160' => 'shi', 'SHI54219' => 'shi', 'SHI54388' => 'shi', 'SMO116G0334' => 'smo', 'SMO310G0002' => 'smo', 'SMO364G0929' => 'smo', 'Solyc00g500115.1' => 'sly', 'Solyc00g500225.1' => 'sly', 'Solyc00g500261.1' => 'sly', 'Solyc00g500361.1' => 'sly', 'Sopen00g002640' => 'spe', 'TAR365G0238' => 'tar', 'TAR636G2145' => 'tar', 'TPR.G36985' => 'tpr', 'TPR.G37274' => 'tpr', 'TWI32G1151' => 'twi', 'unitig_87.g28032' => 'ugi', 'unitig_91.g26487' => 'ugi', 'unitig_91.g26518' => 'ugi', 'VMungo0464G0583' => 'vmu', 'VMungo0580G0002' => 'vmu', 'VMungo1309G2626' => 'vmu' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001325' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001325' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001325' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001325' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001325', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '474', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'Aa31csc239G10' => 'aar', 'Aa31csc464G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1250' => 'aag', 'Ah.10g028160' => 'amhyb', 'AL3G44430' => 'aly', 'AL3G44440' => 'aly', 'Aqoxy12s029' => 'aox', 'Aqoxy12s039' => 'aox', 'Aqoxy4G02026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TB2XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2YD7KU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LX9HH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6K92H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALHF99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D81V2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGV151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5DDSF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5HWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IEGY60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN64LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX3NGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJZL7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8C5RR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7VYQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPY4ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XXM48B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY6KWR' => 'arhy', 'AT2G07675' => 'ath', 'AT2G07751' => 'ath', 'ATCG00905' => 'ath', 'ATCG01230' => 'ath', 'ATMG00980' => 'ath', 'ATMG00990' => 'ath', 'ATR1169G002' => 'atr', 'Atru.chr3.4001' => 'acertr', 'Atru.chr4.739' => 'acertr', 'Atru.chr6.700' => 'acertr', 'BcaC05g26888' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_234p00060' => 'bna', 'BolC2t10588H' => 'bol', 'BolSC28t60355H' => 'bol', 'BolSC28t60356H' => 'bol', 'BolSC29t60558H' => 'bol', 'BolSC29t60626H' => 'bol', 'BolSC35t60681H' => 'bol', 'BolSC35t60716H' => 'bol', 'BolSC37t60786H' => 'bol', 'BolSC45t60898H' => 'bol', 'BolSC45t60921H' => 'bol', 'BolSC47t61057H' => 'bol', 'BolSC47t61069H' => 'bol', 'BolSC49t61131H' => 'bol', 'BolSC49t61154H' => 'bol', 'BraSC103t45495Z' => 'bra', 'BraSC138t45523Z' => 'bra', 'BraSC143t45667Z' => 'bra', 'BraSC48t46255Z' => 'bra', 'BraSC48t46256Z' => 'bra', 'BraSC58t46451Z' => 'bra', 'BraSC59t46512Z' => 'bra', 'BraSC59t46559Z' => 'bra', 'BraSC77t46664Z' => 'bra', 'BraSC77t46665Z' => 'bra', 'C06p21310' => 'bna', 'C06p23120' => 'bna', 'C09p24710' => 'bna', 'CAN.G1741.3' => 'can', 'CAN.G266.7' => 'can', 'CAN.G351.18' => 'can', 'CAN.G889.5' => 'can', 'CANSAT25G2613' => 'cansat', 'CARHR282350' => 'chi', 'CARHR283240' => 'chi', 'CARHR283250' => 'chi', 'CARHR287250' => 'chi', 'CDE02G1246' => 'cde', 'CDE02G2710' => 'cde', 'CiPaw.08G042500' => 'cil', 'CiPaw.08G172200' => 'cil', 'CiPaw.08G173300' => 'cil', 'ClCG00G001510' => 'cla', 'COL.COLO4_01630' => 'col', 'COL.COLO4_02562' => 'col', 'COL.COLO4_03024' => 'col', 'COL.COLO4_03981' => 'col', 'COL.COLO4_04481' => 'col', 'Cpa.g.sc87.115' => 'cpa', 'Cre02.g144400' => 'cre', 'Cre08.g378900' => 'cre', 'CsaV3_1G007720' => 'csa', 'CsaV3_UNG208560' => 'csa', 'CsaV3_UNG210040' => 'csa', 'CSS0016656' => 'camsi', 'CSS0035753' => 'camsi', 'DCAR_016146' => 'dca', 'DCAR_032435' => 'dca', 'DCAR_032436' => 'dca', 'Duzib132G0580' => 'dzi', 'EL10Ac9g21012' => 'bvu', 'EL10As15g24102' => 'bvu', 'EL10As6g23662' => 'bvu', 'Eucgr.E00717' => 'egr', 'Eucgr.H01184' => 'egr', 'Eucgr.H03985' => 'egr', 'Eucgr.K01909' => 'egr', 'Eucgr.L01873' => 'egr', 'FAN03G1410' => 'fan', 'FAN06G1419' => 'fan', 'FAN06G2328' => 'fan', 'FAN08G2386' => 'fan', 'FAN10G4039' => 'fan', 'FAN13G1785' => 'fan', 'FAN18G4430' => 'fan', 'FAN21G0802' => 'fan', 'FvH4_5g00530' => 'fve', 'FvH4_7g21740' => 'fve', 'FvH4_c3g00110' => 'fve', 'Gohir.1Z050302' => 'ghi', 'Gohir.A01G071550' => 'ghi', 'Gohir.A01G143838' => 'ghi', 'Gohir.A02G100900' => 'ghi', 'Gohir.A03G020550' => 'ghi', 'Gohir.A03G089701' => 'ghi', 'Gohir.A03G116614' => 'ghi', 'Gohir.A04G039361' => 'ghi', 'Gohir.A04G061885' => 'ghi', 'Gohir.A04G062885' => 'ghi', 'Gohir.A05G323772' => 'ghi', 'Gohir.A08G093662' => 'ghi', 'Gohir.A08G123750' => 'ghi', 'Gohir.A09G045600' => 'ghi', 'Gohir.A09G045746' => 'ghi', 'Gohir.A09G103232' => 'ghi', 'Gohir.A09G107601' => 'ghi', 'Gohir.A11G179832' => 'ghi', 'Gohir.A11G179998' => 'ghi', 'Gohir.A11G295125' => 'ghi', 'Gohir.A13G086470' => 'ghi', 'Gohir.D01G137751' => 'ghi', 'Gohir.D02G090033' => 'ghi', 'Gohir.D02G117554' => 'ghi', 'Gohir.D04G096628' => 'ghi', 'Gohir.D08G108608' => 'ghi', 'Gohir.D10G177500' => 'ghi', 'Gohir.D10G181800' => 'ghi', 'Gohir.D10G245316' => 'ghi', 'Gohir.D12G017000' => 'ghi', 'Gorai.004G116100' => 'gra', 'Gorai.005G077900' => 'gra', 'Gorai.005G100800' => 'gra', 'Gorai.005G170800' => 'gra', 'Gorai.008G017300' => 'gra', 'Gorai.011G198300' => 'gra', 'Gorai.011G203400' => 'gra', 'Gorai.011G282800' => 'gra', 'Gorai.012G049000' => 'gra', 'GSVIVG01002752001' => 'vvi', 'HanXRQChr00c0055g0571461' => 'han', 'HanXRQChr01g0009331' => 'han', 'HanXRQChr01g0017121' => 'han', 'HanXRQChr01g0027141' => 'han', 'HanXRQChr08g0224261' => 'han', 'HanXRQChr08g0236211' => 'han', 'HanXRQChr10g0297181' => 'han', 'HanXRQChr10g0305211' => 'han', 'HanXRQChr12g0367961' => 'han', 'HanXRQChr12g0367971' => 'han', 'HanXRQChr12g0370991' => 'han', 'HanXRQChr15g0488691' => 'han', 'HanXRQChr16g0504411' => 'han', 'HanXRQCPg0580291' => 'han', 'HanXRQCPg0580431' => 'han', 'HanXRQMTg0579641' => 'han', 'Haze_27062' => 'cav', 'Hma1.2p1_1244F.1_g270080' => 'hma', 'Hund07989' => 'sun', 'Hund08791' => 'sun', 'Hund20482' => 'sun', 'Hund22781' => 'sun', 'Hund23966' => 'sun', 'Hund27587' => 'sun', 'Hund27634' => 'sun', 'Hund27666' => 'sun', 'Hund27817' => 'sun', 'Hund27899' => 'sun', 'Hund27922' => 'sun', 'Hund28083' => 'sun', 'Hund28867' => 'sun', 'Hund28882' => 'sun', 'Hund28936' => 'sun', 'Hund28943' => 'sun', 'Hund28948' => 'sun', 'Hund28957' => 'sun', 'Hund28958' => 'sun', 'Hund28972' => 'sun', 'Hund28982' => 'sun', 'Hund29029' => 'sun', 'Hund29085' => 'sun', 'Hund29092' => 'sun', 'Hund29106' => 'sun', 'Hund29117' => 'sun', 'Hund29471' => 'sun', 'Hund29893' => 'sun', 'Hund30457' => 'sun', 'Hund30653' => 'sun', 'Hund30764' => 'sun', 'Hund30783' => 'sun', 'Hund30784' => 'sun', 'Hund30785' => 'sun', 'Hund30802' => 'sun', 'Hund30819' => 'sun', 'Hund30820' => 'sun', 'Hund30821' => 'sun', 'Hund30822' => 'sun', 'Hund30823' => 'sun', 'Hund30824' => 'sun', 'Hund30825' => 'sun', 'Hund30826' => 'sun', 'Hund30827' => 'sun', 'Hund30828' => 'sun', 'Hund30829' => 'sun', 'Hund30830' => 'sun', 'Hund30831' => 'sun', 'Hund30832' => 'sun', 'Hund30833' => 'sun', 'Hund30837' => 'sun', 'Hund30843' => 'sun', 'Hund30846' => 'sun', 'Hund30919' => 'sun', 'Hund30957' => 'sun', 'Hund30987' => 'sun', 'Hund30988' => 'sun', 'Hund31006' => 'sun', 'Hund31036' => 'sun', 'Hund31039' => 'sun', 'Hund31051' => 'sun', 'Hund31105' => 'sun', 'Lalb_Chr00c24g0406961' => 'lal', 'Lalb_Chr00c24g0406971' => 'lal', 'Lalb_Chr03g0038861' => 'lal', 'Lalb_Chr03g0038871' => 'lal', 'Lalb_Chr17g0337391' => 'lal', 'Lalb_Chr17g0337401' => 'lal', 'Lj2A1221T109' => 'lonja', 'LjContig00315g0013534' => 'lja', 'LjContig00315g0018892' => 'lja', 'Lsat_1_v5_gn_1_24001' => 'lsa', 'Lsat_1_v5_gn_1_95121' => 'lsa', 'Lsat_1_v5_gn_2_20620' => 'lsa', 'Lsat_1_v5_gn_4_116900' => 'lsa', 'Lsat_1_v5_gn_5_16521' => 'lsa', 'Lsat_1_v5_gn_5_16541' => 'lsa', 'Lsat_1_v5_gn_6_106840' => 'lsa', 'Lsat_1_v5_gn_7_341' => 'lsa', 'Lsat_1_v5_gn_8_97380' => 'lsa', 'Manes.06G021801' => 'mes', 'Manes.08G083670' => 'mes', 'Manes.09G011803' => 'mes', 'Mapoly0163s0017' => 'mpo', 'MBI05_g23316_MAGBIO' => 'mbi', 'MBI07_g03189_MAGBIO' => 'mbi', 'MBI08_g48230_MAGBIO' => 'mbi', 'MBI10_g41320_MAGBIO' => 'mbi', 'MBI10_g41321_MAGBIO' => 'mbi', 'MD05G1172200' => 'mdo', 'MD16G1012400' => 'mdo', 'Medtr0002s0280' => 'mtr', 'Medtr0082s0040' => 'mtr', 'Medtr0625s0020' => 'mtr', 'Medtr2g040140' => 'mtr', 'Medtr7g055840' => 'mtr', 'Medtr7g055910' => 'mtr', 'MELO3C000106.2' => 'cme', 'MELO3C003986.2' => 'cme', 'Migut.F01472' => 'egut', 'MSTRG.3525' => 'ama', 'MSTRG.3526' => 'ama', 'Nitab4.5_0000172g0450' => 'nta', 'Nitab4.5_0000172g0980' => 'nta', 'Nitab4.5_0000172g1180' => 'nta', 'Nitab4.5_0000172g1710' => 'nta', 'Nitab4.5_0000349g0200' => 'nta', 'Nitab4.5_0000692g0250' => 'nta', 'Nitab4.5_0000844g0170' => 'nta', 'Nitab4.5_0000844g0210' => 'nta', 'Nitab4.5_0000844g0260' => 'nta', 'Nitab4.5_0001170g0090' => 'nta', 'Nitab4.5_0001170g0100' => 'nta', 'Nitab4.5_0001348g0140' => 'nta', 'Nitab4.5_0001770g0040' => 'nta', 'Nitab4.5_0001770g0050' => 'nta', 'Nitab4.5_0001770g0060' => 'nta', 'Nitab4.5_0001788g0290' => 'nta', 'Nitab4.5_0001788g0300' => 'nta', 'Nitab4.5_0001788g0340' => 'nta', 'Nitab4.5_0001796g0230' => 'nta', 'Nitab4.5_0001796g0270' => 'nta', 'Nitab4.5_0002347g0060' => 'nta', 'Nitab4.5_0002716g0110' => 'nta', 'Nitab4.5_0003382g0070' => 'nta', 'Nitab4.5_0003713g0020' => 'nta', 'Nitab4.5_0004137g0060' => 'nta', 'Nitab4.5_0004721g0050' => 'nta', 'Nitab4.5_0005853g0070' => 'nta', 'Nitab4.5_0005853g0080' => 'nta', 'Nitab4.5_0006683g0140' => 'nta', 'Nitab4.5_0008835g0060' => 'nta', 'Nitab4.5_0009421g0030' => 'nta', 'Nitab4.5_0012234g0060' => 'nta', 'Nitab4.5_0016174g0030' => 'nta', 'Oeu002614.1' => 'oeu', 'Oeu038563.1' => 'oeu', 'Oeu040255.1' => 'oeu', 'Os12g0423142' => 'osa', 'Peaxi162Scf00001g04024' => 'pax', 'Peaxi162Scf00002g00218' => 'pax', 'Peaxi162Scf00489g00021' => 'pax', 'Peaxi162Scf00588g00111' => 'pax', 'PGR028G0006' => 'pgr', 'PGR028G0020' => 'pgr', 'PGR031G1129' => 'pgr', 'PGSC0003DMG400004141' => 'stu', 'PGSC0003DMG400021744' => 'stu', 'PGSC0003DMG400029876' => 'stu', 'Phvul.009G090248' => 'pvu', 'Potri.007G062001' => 'ptr', 'Potri.008G208300' => 'ptr', 'Pp3c21_8460' => 'ppa', 'Prupe.6G146800' => 'ppe', 'Psat0s4951g0160' => 'psa', 'PSO017G6547' => 'pso', 'PSO170G5129' => 'pso', 'PSO357G0201' => 'pso', 'PSO384G1460' => 'pso', 'QL93p0823_0004' => 'qlo', 'RcHm_v2.0_Chr5g0080691' => 'rch', 'RcHm_v2.0_Chr7g0201871' => 'rch', 'RcHm_v2.0_MTg0498381' => 'rch', 'RcHm_v2.0_MTg0498391' => 'rch', 'RhsimPtG0002900' => 'rsi', 'SabraMtG0001800' => 'sbr', 'SalBow1G0875' => 'sbo', 'SalBow1G2962' => 'sbo', 'SalBow1G5537' => 'sbo', 'SalBow1G5748' => 'sbo', 'SalBow1G6489' => 'sbo', 'SalBow1G6915' => 'sbo', 'SalBow1G7521' => 'sbo', 'SalBow2G0293' => 'sbo', 'Sc03g0005010' => 'sci', 'Sc04g0005510' => 'sci', 'Sc04g0005520' => 'sci', 'Sc16g0005190' => 'sci', 'Sc25g0005880' => 'sci', 'Sed0003644' => 'sed', 'Sed0019436' => 'sed', 'Sed0022288' => 'sed', 'Sed0024579' => 'sed', 'SEGI_23966' => 'sgi', 'SGA_v2.0_scaffold140G35498' => 'sas', 'SGA_v2.0_scaffold255G45400' => 'sas', 'SGA_v2.0_scaffold255G45513' => 'sas', 'SGA_v2.0_scaffold893G53704' => 'sas', 'SHI00829' => 'shi', 'SHI15029' => 'shi', 'SHI26649' => 'shi', 'SHI27347' => 'shi', 'SHI27348' => 'shi', 'SHI33930' => 'shi', 'SHI34220' => 'shi', 'SHI34613' => 'shi', 'SHI34614' => 'shi', 'SHI34630' => 'shi', 'SHI35190' => 'shi', 'SHI35326' => 'shi', 'SHI35334' => 'shi', 'SHI35455' => 'shi', 'SHI35457' => 'shi', 'SHI35980' => 'shi', 'SHI36142' => 'shi', 'SHI36266' => 'shi', 'SHI36368' => 'shi', 'SHI36369' => 'shi', 'SHI36383' => 'shi', 'SHI36567' => 'shi', 'SHI36581' => 'shi', 'SHI36629' => 'shi', 'SHI36771' => 'shi', 'SHI36782' => 'shi', 'SHI36935' => 'shi', 'SHI36966' => 'shi', 'SHI37065' => 'shi', 'SHI37617' => 'shi', 'SHI38206' => 'shi', 'SHI38210' => 'shi', 'SHI38315' => 'shi', 'SHI38566' => 'shi', 'SHI39119' => 'shi', 'SHI39476' => 'shi', 'SHI39477' => 'shi', 'SHI39752' => 'shi', 'SHI39777' => 'shi', 'SHI39812' => 'shi', 'SHI40461' => 'shi', 'SHI40932' => 'shi', 'SHI41240' => 'shi', 'SHI41241' => 'shi', 'SHI42173' => 'shi', 'SHI42503' => 'shi', 'SHI43533' => 'shi', 'SHI43781' => 'shi', 'SHI43970' => 'shi', 'SHI44576' => 'shi', 'SHI44670' => 'shi', 'SHI44671' => 'shi', 'SHI45144' => 'shi', 'SHI45925' => 'shi', 'SHI46090' => 'shi', 'SHI46259' => 'shi', 'SHI46260' => 'shi', 'SHI46908' => 'shi', 'SHI47712' => 'shi', 'SHI48150' => 'shi', 'SHI48307' => 'shi', 'SHI48750' => 'shi', 'SHI48751' => 'shi', 'SHI48902' => 'shi', 'SHI48903' => 'shi', 'SHI49107' => 'shi', 'SHI49108' => 'shi', 'SHI49663' => 'shi', 'SHI49748' => 'shi', 'SHI49794' => 'shi', 'SHI49994' => 'shi', 'SHI50386' => 'shi', 'SHI50512' => 'shi', 'SHI50625' => 'shi', 'SHI50801' => 'shi', 'SHI51105' => 'shi', 'SHI51228' => 'shi', 'SHI51612' => 'shi', 'SHI51658' => 'shi', 'SHI51700' => 'shi', 'SHI52150' => 'shi', 'SHI53045' => 'shi', 'SHI53190' => 'shi', 'SHI53369' => 'shi', 'SHI53372' => 'shi', 'SHI53577' => 'shi', 'SHI53781' => 'shi', 'SHI54131' => 'shi', 'SHI54160' => 'shi', 'SHI54219' => 'shi', 'SHI54388' => 'shi', 'SMO116G0334' => 'smo', 'SMO310G0002' => 'smo', 'SMO364G0929' => 'smo', 'Solyc00g500115.1' => 'sly', 'Solyc00g500225.1' => 'sly', 'Solyc00g500261.1' => 'sly', 'Solyc00g500361.1' => 'sly', 'Sopen00g002640' => 'spe', 'TAR365G0238' => 'tar', 'TAR636G2145' => 'tar', 'TPR.G36985' => 'tpr', 'TPR.G37274' => 'tpr', 'TWI32G1151' => 'twi', 'unitig_87.g28032' => 'ugi', 'unitig_91.g26487' => 'ugi', 'unitig_91.g26518' => 'ugi', 'VMungo0464G0583' => 'vmu', 'VMungo0580G0002' => 'vmu', 'VMungo1309G2626' => 'vmu' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001325', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001325' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001325', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '474', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001325' ) ), 'genes' => array( 'Aa31csc239G10' => 'aar', 'Aa31csc464G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1250' => 'aag', 'Ah.10g028160' => 'amhyb', 'AL3G44430' => 'aly', 'AL3G44440' => 'aly', 'Aqoxy12s029' => 'aox', 'Aqoxy12s039' => 'aox', 'Aqoxy4G02026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TB2XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2YD7KU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LX9HH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6K92H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALHF99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D81V2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGV151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5DDSF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5HWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IEGY60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN64LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX3NGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJZL7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8C5RR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7VYQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPY4ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XXM48B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY6KWR' => 'arhy', 'AT2G07675' => 'ath', 'AT2G07751' => 'ath', 'ATCG00905' => 'ath', 'ATCG01230' => 'ath', 'ATMG00980' => 'ath', 'ATMG00990' => 'ath', 'ATR1169G002' => 'atr', 'Atru.chr3.4001' => 'acertr', 'Atru.chr4.739' => 'acertr', 'Atru.chr6.700' => 'acertr', 'BcaC05g26888' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_234p00060' => 'bna', 'BolC2t10588H' => 'bol', 'BolSC28t60355H' => 'bol', 'BolSC28t60356H' => 'bol', 'BolSC29t60558H' => 'bol', 'BolSC29t60626H' => 'bol', 'BolSC35t60681H' => 'bol', 'BolSC35t60716H' => 'bol', 'BolSC37t60786H' => 'bol', 'BolSC45t60898H' => 'bol', 'BolSC45t60921H' => 'bol', 'BolSC47t61057H' => 'bol', 'BolSC47t61069H' => 'bol', 'BolSC49t61131H' => 'bol', 'BolSC49t61154H' => 'bol', 'BraSC103t45495Z' => 'bra', 'BraSC138t45523Z' => 'bra', 'BraSC143t45667Z' => 'bra', 'BraSC48t46255Z' => 'bra', 'BraSC48t46256Z' => 'bra', 'BraSC58t46451Z' => 'bra', 'BraSC59t46512Z' => 'bra', 'BraSC59t46559Z' => 'bra', 'BraSC77t46664Z' => 'bra', 'BraSC77t46665Z' => 'bra', 'C06p21310' => 'bna', 'C06p23120' => 'bna', 'C09p24710' => 'bna', 'CAN.G1741.3' => 'can', 'CAN.G266.7' => 'can', 'CAN.G351.18' => 'can', 'CAN.G889.5' => 'can', 'CANSAT25G2613' => 'cansat', 'CARHR282350' => 'chi', 'CARHR283240' => 'chi', 'CARHR283250' => 'chi', 'CARHR287250' => 'chi', 'CDE02G1246' => 'cde', 'CDE02G2710' => 'cde', 'CiPaw.08G042500' => 'cil', 'CiPaw.08G172200' => 'cil', 'CiPaw.08G173300' => 'cil', 'ClCG00G001510' => 'cla', 'COL.COLO4_01630' => 'col', 'COL.COLO4_02562' => 'col', 'COL.COLO4_03024' => 'col', 'COL.COLO4_03981' => 'col', 'COL.COLO4_04481' => 'col', 'Cpa.g.sc87.115' => 'cpa', 'Cre02.g144400' => 'cre', 'Cre08.g378900' => 'cre', 'CsaV3_1G007720' => 'csa', 'CsaV3_UNG208560' => 'csa', 'CsaV3_UNG210040' => 'csa', 'CSS0016656' => 'camsi', 'CSS0035753' => 'camsi', 'DCAR_016146' => 'dca', 'DCAR_032435' => 'dca', 'DCAR_032436' => 'dca', 'Duzib132G0580' => 'dzi', 'EL10Ac9g21012' => 'bvu', 'EL10As15g24102' => 'bvu', 'EL10As6g23662' => 'bvu', 'Eucgr.E00717' => 'egr', 'Eucgr.H01184' => 'egr', 'Eucgr.H03985' => 'egr', 'Eucgr.K01909' => 'egr', 'Eucgr.L01873' => 'egr', 'FAN03G1410' => 'fan', 'FAN06G1419' => 'fan', 'FAN06G2328' => 'fan', 'FAN08G2386' => 'fan', 'FAN10G4039' => 'fan', 'FAN13G1785' => 'fan', 'FAN18G4430' => 'fan', 'FAN21G0802' => 'fan', 'FvH4_5g00530' => 'fve', 'FvH4_7g21740' => 'fve', 'FvH4_c3g00110' => 'fve', 'Gohir.1Z050302' => 'ghi', 'Gohir.A01G071550' => 'ghi', 'Gohir.A01G143838' => 'ghi', 'Gohir.A02G100900' => 'ghi', 'Gohir.A03G020550' => 'ghi', 'Gohir.A03G089701' => 'ghi', 'Gohir.A03G116614' => 'ghi', 'Gohir.A04G039361' => 'ghi', 'Gohir.A04G061885' => 'ghi', 'Gohir.A04G062885' => 'ghi', 'Gohir.A05G323772' => 'ghi', 'Gohir.A08G093662' => 'ghi', 'Gohir.A08G123750' => 'ghi', 'Gohir.A09G045600' => 'ghi', 'Gohir.A09G045746' => 'ghi', 'Gohir.A09G103232' => 'ghi', 'Gohir.A09G107601' => 'ghi', 'Gohir.A11G179832' => 'ghi', 'Gohir.A11G179998' => 'ghi', 'Gohir.A11G295125' => 'ghi', 'Gohir.A13G086470' => 'ghi', 'Gohir.D01G137751' => 'ghi', 'Gohir.D02G090033' => 'ghi', 'Gohir.D02G117554' => 'ghi', 'Gohir.D04G096628' => 'ghi', 'Gohir.D08G108608' => 'ghi', 'Gohir.D10G177500' => 'ghi', 'Gohir.D10G181800' => 'ghi', 'Gohir.D10G245316' => 'ghi', 'Gohir.D12G017000' => 'ghi', 'Gorai.004G116100' => 'gra', 'Gorai.005G077900' => 'gra', 'Gorai.005G100800' => 'gra', 'Gorai.005G170800' => 'gra', 'Gorai.008G017300' => 'gra', 'Gorai.011G198300' => 'gra', 'Gorai.011G203400' => 'gra', 'Gorai.011G282800' => 'gra', 'Gorai.012G049000' => 'gra', 'GSVIVG01002752001' => 'vvi', 'HanXRQChr00c0055g0571461' => 'han', 'HanXRQChr01g0009331' => 'han', 'HanXRQChr01g0017121' => 'han', 'HanXRQChr01g0027141' => 'han', 'HanXRQChr08g0224261' => 'han', 'HanXRQChr08g0236211' => 'han', 'HanXRQChr10g0297181' => 'han', 'HanXRQChr10g0305211' => 'han', 'HanXRQChr12g0367961' => 'han', 'HanXRQChr12g0367971' => 'han', 'HanXRQChr12g0370991' => 'han', 'HanXRQChr15g0488691' => 'han', 'HanXRQChr16g0504411' => 'han', 'HanXRQCPg0580291' => 'han', 'HanXRQCPg0580431' => 'han', 'HanXRQMTg0579641' => 'han', 'Haze_27062' => 'cav', 'Hma1.2p1_1244F.1_g270080' => 'hma', 'Hund07989' => 'sun', 'Hund08791' => 'sun', 'Hund20482' => 'sun', 'Hund22781' => 'sun', 'Hund23966' => 'sun', 'Hund27587' => 'sun', 'Hund27634' => 'sun', 'Hund27666' => 'sun', 'Hund27817' => 'sun', 'Hund27899' => 'sun', 'Hund27922' => 'sun', 'Hund28083' => 'sun', 'Hund28867' => 'sun', 'Hund28882' => 'sun', 'Hund28936' => 'sun', 'Hund28943' => 'sun', 'Hund28948' => 'sun', 'Hund28957' => 'sun', 'Hund28958' => 'sun', 'Hund28972' => 'sun', 'Hund28982' => 'sun', 'Hund29029' => 'sun', 'Hund29085' => 'sun', 'Hund29092' => 'sun', 'Hund29106' => 'sun', 'Hund29117' => 'sun', 'Hund29471' => 'sun', 'Hund29893' => 'sun', 'Hund30457' => 'sun', 'Hund30653' => 'sun', 'Hund30764' => 'sun', 'Hund30783' => 'sun', 'Hund30784' => 'sun', 'Hund30785' => 'sun', 'Hund30802' => 'sun', 'Hund30819' => 'sun', 'Hund30820' => 'sun', 'Hund30821' => 'sun', 'Hund30822' => 'sun', 'Hund30823' => 'sun', 'Hund30824' => 'sun', 'Hund30825' => 'sun', 'Hund30826' => 'sun', 'Hund30827' => 'sun', 'Hund30828' => 'sun', 'Hund30829' => 'sun', 'Hund30830' => 'sun', 'Hund30831' => 'sun', 'Hund30832' => 'sun', 'Hund30833' => 'sun', 'Hund30837' => 'sun', 'Hund30843' => 'sun', 'Hund30846' => 'sun', 'Hund30919' => 'sun', 'Hund30957' => 'sun', 'Hund30987' => 'sun', 'Hund30988' => 'sun', 'Hund31006' => 'sun', 'Hund31036' => 'sun', 'Hund31039' => 'sun', 'Hund31051' => 'sun', 'Hund31105' => 'sun', 'Lalb_Chr00c24g0406961' => 'lal', 'Lalb_Chr00c24g0406971' => 'lal', 'Lalb_Chr03g0038861' => 'lal', 'Lalb_Chr03g0038871' => 'lal', 'Lalb_Chr17g0337391' => 'lal', 'Lalb_Chr17g0337401' => 'lal', 'Lj2A1221T109' => 'lonja', 'LjContig00315g0013534' => 'lja', 'LjContig00315g0018892' => 'lja', 'Lsat_1_v5_gn_1_24001' => 'lsa', 'Lsat_1_v5_gn_1_95121' => 'lsa', 'Lsat_1_v5_gn_2_20620' => 'lsa', 'Lsat_1_v5_gn_4_116900' => 'lsa', 'Lsat_1_v5_gn_5_16521' => 'lsa', 'Lsat_1_v5_gn_5_16541' => 'lsa', 'Lsat_1_v5_gn_6_106840' => 'lsa', 'Lsat_1_v5_gn_7_341' => 'lsa', 'Lsat_1_v5_gn_8_97380' => 'lsa', 'Manes.06G021801' => 'mes', 'Manes.08G083670' => 'mes', 'Manes.09G011803' => 'mes', 'Mapoly0163s0017' => 'mpo', 'MBI05_g23316_MAGBIO' => 'mbi', 'MBI07_g03189_MAGBIO' => 'mbi', 'MBI08_g48230_MAGBIO' => 'mbi', 'MBI10_g41320_MAGBIO' => 'mbi', 'MBI10_g41321_MAGBIO' => 'mbi', 'MD05G1172200' => 'mdo', 'MD16G1012400' => 'mdo', 'Medtr0002s0280' => 'mtr', 'Medtr0082s0040' => 'mtr', 'Medtr0625s0020' => 'mtr', 'Medtr2g040140' => 'mtr', 'Medtr7g055840' => 'mtr', 'Medtr7g055910' => 'mtr', 'MELO3C000106.2' => 'cme', 'MELO3C003986.2' => 'cme', 'Migut.F01472' => 'egut', 'MSTRG.3525' => 'ama', 'MSTRG.3526' => 'ama', 'Nitab4.5_0000172g0450' => 'nta', 'Nitab4.5_0000172g0980' => 'nta', 'Nitab4.5_0000172g1180' => 'nta', 'Nitab4.5_0000172g1710' => 'nta', 'Nitab4.5_0000349g0200' => 'nta', 'Nitab4.5_0000692g0250' => 'nta', 'Nitab4.5_0000844g0170' => 'nta', 'Nitab4.5_0000844g0210' => 'nta', 'Nitab4.5_0000844g0260' => 'nta', 'Nitab4.5_0001170g0090' => 'nta', 'Nitab4.5_0001170g0100' => 'nta', 'Nitab4.5_0001348g0140' => 'nta', 'Nitab4.5_0001770g0040' => 'nta', 'Nitab4.5_0001770g0050' => 'nta', 'Nitab4.5_0001770g0060' => 'nta', 'Nitab4.5_0001788g0290' => 'nta', 'Nitab4.5_0001788g0300' => 'nta', 'Nitab4.5_0001788g0340' => 'nta', 'Nitab4.5_0001796g0230' => 'nta', 'Nitab4.5_0001796g0270' => 'nta', 'Nitab4.5_0002347g0060' => 'nta', 'Nitab4.5_0002716g0110' => 'nta', 'Nitab4.5_0003382g0070' => 'nta', 'Nitab4.5_0003713g0020' => 'nta', 'Nitab4.5_0004137g0060' => 'nta', 'Nitab4.5_0004721g0050' => 'nta', 'Nitab4.5_0005853g0070' => 'nta', 'Nitab4.5_0005853g0080' => 'nta', 'Nitab4.5_0006683g0140' => 'nta', 'Nitab4.5_0008835g0060' => 'nta', 'Nitab4.5_0009421g0030' => 'nta', 'Nitab4.5_0012234g0060' => 'nta', 'Nitab4.5_0016174g0030' => 'nta', 'Oeu002614.1' => 'oeu', 'Oeu038563.1' => 'oeu', 'Oeu040255.1' => 'oeu', 'Os12g0423142' => 'osa', 'Peaxi162Scf00001g04024' => 'pax', 'Peaxi162Scf00002g00218' => 'pax', 'Peaxi162Scf00489g00021' => 'pax', 'Peaxi162Scf00588g00111' => 'pax', 'PGR028G0006' => 'pgr', 'PGR028G0020' => 'pgr', 'PGR031G1129' => 'pgr', 'PGSC0003DMG400004141' => 'stu', 'PGSC0003DMG400021744' => 'stu', 'PGSC0003DMG400029876' => 'stu', 'Phvul.009G090248' => 'pvu', 'Potri.007G062001' => 'ptr', 'Potri.008G208300' => 'ptr', 'Pp3c21_8460' => 'ppa', 'Prupe.6G146800' => 'ppe', 'Psat0s4951g0160' => 'psa', 'PSO017G6547' => 'pso', 'PSO170G5129' => 'pso', 'PSO357G0201' => 'pso', 'PSO384G1460' => 'pso', 'QL93p0823_0004' => 'qlo', 'RcHm_v2.0_Chr5g0080691' => 'rch', 'RcHm_v2.0_Chr7g0201871' => 'rch', 'RcHm_v2.0_MTg0498381' => 'rch', 'RcHm_v2.0_MTg0498391' => 'rch', 'RhsimPtG0002900' => 'rsi', 'SabraMtG0001800' => 'sbr', 'SalBow1G0875' => 'sbo', 'SalBow1G2962' => 'sbo', 'SalBow1G5537' => 'sbo', 'SalBow1G5748' => 'sbo', 'SalBow1G6489' => 'sbo', 'SalBow1G6915' => 'sbo', 'SalBow1G7521' => 'sbo', 'SalBow2G0293' => 'sbo', 'Sc03g0005010' => 'sci', 'Sc04g0005510' => 'sci', 'Sc04g0005520' => 'sci', 'Sc16g0005190' => 'sci', 'Sc25g0005880' => 'sci', 'Sed0003644' => 'sed', 'Sed0019436' => 'sed', 'Sed0022288' => 'sed', 'Sed0024579' => 'sed', 'SEGI_23966' => 'sgi', 'SGA_v2.0_scaffold140G35498' => 'sas', 'SGA_v2.0_scaffold255G45400' => 'sas', 'SGA_v2.0_scaffold255G45513' => 'sas', 'SGA_v2.0_scaffold893G53704' => 'sas', 'SHI00829' => 'shi', 'SHI15029' => 'shi', 'SHI26649' => 'shi', 'SHI27347' => 'shi', 'SHI27348' => 'shi', 'SHI33930' => 'shi', 'SHI34220' => 'shi', 'SHI34613' => 'shi', 'SHI34614' => 'shi', 'SHI34630' => 'shi', 'SHI35190' => 'shi', 'SHI35326' => 'shi', 'SHI35334' => 'shi', 'SHI35455' => 'shi', 'SHI35457' => 'shi', 'SHI35980' => 'shi', 'SHI36142' => 'shi', 'SHI36266' => 'shi', 'SHI36368' => 'shi', 'SHI36369' => 'shi', 'SHI36383' => 'shi', 'SHI36567' => 'shi', 'SHI36581' => 'shi', 'SHI36629' => 'shi', 'SHI36771' => 'shi', 'SHI36782' => 'shi', 'SHI36935' => 'shi', 'SHI36966' => 'shi', 'SHI37065' => 'shi', 'SHI37617' => 'shi', 'SHI38206' => 'shi', 'SHI38210' => 'shi', 'SHI38315' => 'shi', 'SHI38566' => 'shi', 'SHI39119' => 'shi', 'SHI39476' => 'shi', 'SHI39477' => 'shi', 'SHI39752' => 'shi', 'SHI39777' => 'shi', 'SHI39812' => 'shi', 'SHI40461' => 'shi', 'SHI40932' => 'shi', 'SHI41240' => 'shi', 'SHI41241' => 'shi', 'SHI42173' => 'shi', 'SHI42503' => 'shi', 'SHI43533' => 'shi', 'SHI43781' => 'shi', 'SHI43970' => 'shi', 'SHI44576' => 'shi', 'SHI44670' => 'shi', 'SHI44671' => 'shi', 'SHI45144' => 'shi', 'SHI45925' => 'shi', 'SHI46090' => 'shi', 'SHI46259' => 'shi', 'SHI46260' => 'shi', 'SHI46908' => 'shi', 'SHI47712' => 'shi', 'SHI48150' => 'shi', 'SHI48307' => 'shi', 'SHI48750' => 'shi', 'SHI48751' => 'shi', 'SHI48902' => 'shi', 'SHI48903' => 'shi', 'SHI49107' => 'shi', 'SHI49108' => 'shi', 'SHI49663' => 'shi', 'SHI49748' => 'shi', 'SHI49794' => 'shi', 'SHI49994' => 'shi', 'SHI50386' => 'shi', 'SHI50512' => 'shi', 'SHI50625' => 'shi', 'SHI50801' => 'shi', 'SHI51105' => 'shi', 'SHI51228' => 'shi', 'SHI51612' => 'shi', 'SHI51658' => 'shi', 'SHI51700' => 'shi', 'SHI52150' => 'shi', 'SHI53045' => 'shi', 'SHI53190' => 'shi', 'SHI53369' => 'shi', 'SHI53372' => 'shi', 'SHI53577' => 'shi', 'SHI53781' => 'shi', 'SHI54131' => 'shi', 'SHI54160' => 'shi', 'SHI54219' => 'shi', 'SHI54388' => 'shi', 'SMO116G0334' => 'smo', 'SMO310G0002' => 'smo', 'SMO364G0929' => 'smo', 'Solyc00g500115.1' => 'sly', 'Solyc00g500225.1' => 'sly', 'Solyc00g500261.1' => 'sly', 'Solyc00g500361.1' => 'sly', 'Sopen00g002640' => 'spe', 'TAR365G0238' => 'tar', 'TAR636G2145' => 'tar', 'TPR.G36985' => 'tpr', 'TPR.G37274' => 'tpr', 'TWI32G1151' => 'twi', 'unitig_87.g28032' => 'ugi', 'unitig_91.g26487' => 'ugi', 'unitig_91.g26518' => 'ugi', 'VMungo0464G0583' => 'vmu', 'VMungo0580G0002' => 'vmu', 'VMungo1309G2626' => 'vmu' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001325' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001325' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001325' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001325' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001325', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '474', 'num_species' => '79' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'Aa31csc239G10' => 'aar', 'Aa31csc464G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1250' => 'aag', 'Ah.10g028160' => 'amhyb', 'AL3G44430' => 'aly', 'AL3G44440' => 'aly', 'Aqoxy12s029' => 'aox', 'Aqoxy12s039' => 'aox', 'Aqoxy4G02026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TB2XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2YD7KU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LX9HH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6K92H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALHF99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D81V2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGV151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5DDSF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5HWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IEGY60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN64LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX3NGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJZL7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8C5RR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7VYQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPY4ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XXM48B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY6KWR' => 'arhy', 'AT2G07675' => 'ath', 'AT2G07751' => 'ath', 'ATCG00905' => 'ath', 'ATCG01230' => 'ath', 'ATMG00980' => 'ath', 'ATMG00990' => 'ath', 'ATR1169G002' => 'atr', 'Atru.chr3.4001' => 'acertr', 'Atru.chr4.739' => 'acertr', 'Atru.chr6.700' => 'acertr', 'BcaC05g26888' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_234p00060' => 'bna', 'BolC2t10588H' => 'bol', 'BolSC28t60355H' => 'bol', 'BolSC28t60356H' => 'bol', 'BolSC29t60558H' => 'bol', 'BolSC29t60626H' => 'bol', 'BolSC35t60681H' => 'bol', 'BolSC35t60716H' => 'bol', 'BolSC37t60786H' => 'bol', 'BolSC45t60898H' => 'bol', 'BolSC45t60921H' => 'bol', 'BolSC47t61057H' => 'bol', 'BolSC47t61069H' => 'bol', 'BolSC49t61131H' => 'bol', 'BolSC49t61154H' => 'bol', 'BraSC103t45495Z' => 'bra', 'BraSC138t45523Z' => 'bra', 'BraSC143t45667Z' => 'bra', 'BraSC48t46255Z' => 'bra', 'BraSC48t46256Z' => 'bra', 'BraSC58t46451Z' => 'bra', 'BraSC59t46512Z' => 'bra', 'BraSC59t46559Z' => 'bra', 'BraSC77t46664Z' => 'bra', 'BraSC77t46665Z' => 'bra', 'C06p21310' => 'bna', 'C06p23120' => 'bna', 'C09p24710' => 'bna', 'CAN.G1741.3' => 'can', 'CAN.G266.7' => 'can', 'CAN.G351.18' => 'can', 'CAN.G889.5' => 'can', 'CANSAT25G2613' => 'cansat', 'CARHR282350' => 'chi', 'CARHR283240' => 'chi', 'CARHR283250' => 'chi', 'CARHR287250' => 'chi', 'CDE02G1246' => 'cde', 'CDE02G2710' => 'cde', 'CiPaw.08G042500' => 'cil', 'CiPaw.08G172200' => 'cil', 'CiPaw.08G173300' => 'cil', 'ClCG00G001510' => 'cla', 'COL.COLO4_01630' => 'col', 'COL.COLO4_02562' => 'col', 'COL.COLO4_03024' => 'col', 'COL.COLO4_03981' => 'col', 'COL.COLO4_04481' => 'col', 'Cpa.g.sc87.115' => 'cpa', 'Cre02.g144400' => 'cre', 'Cre08.g378900' => 'cre', 'CsaV3_1G007720' => 'csa', 'CsaV3_UNG208560' => 'csa', 'CsaV3_UNG210040' => 'csa', 'CSS0016656' => 'camsi', 'CSS0035753' => 'camsi', 'DCAR_016146' => 'dca', 'DCAR_032435' => 'dca', 'DCAR_032436' => 'dca', 'Duzib132G0580' => 'dzi', 'EL10Ac9g21012' => 'bvu', 'EL10As15g24102' => 'bvu', 'EL10As6g23662' => 'bvu', 'Eucgr.E00717' => 'egr', 'Eucgr.H01184' => 'egr', 'Eucgr.H03985' => 'egr', 'Eucgr.K01909' => 'egr', 'Eucgr.L01873' => 'egr', 'FAN03G1410' => 'fan', 'FAN06G1419' => 'fan', 'FAN06G2328' => 'fan', 'FAN08G2386' => 'fan', 'FAN10G4039' => 'fan', 'FAN13G1785' => 'fan', 'FAN18G4430' => 'fan', 'FAN21G0802' => 'fan', 'FvH4_5g00530' => 'fve', 'FvH4_7g21740' => 'fve', 'FvH4_c3g00110' => 'fve', 'Gohir.1Z050302' => 'ghi', 'Gohir.A01G071550' => 'ghi', 'Gohir.A01G143838' => 'ghi', 'Gohir.A02G100900' => 'ghi', 'Gohir.A03G020550' => 'ghi', 'Gohir.A03G089701' => 'ghi', 'Gohir.A03G116614' => 'ghi', 'Gohir.A04G039361' => 'ghi', 'Gohir.A04G061885' => 'ghi', 'Gohir.A04G062885' => 'ghi', 'Gohir.A05G323772' => 'ghi', 'Gohir.A08G093662' => 'ghi', 'Gohir.A08G123750' => 'ghi', 'Gohir.A09G045600' => 'ghi', 'Gohir.A09G045746' => 'ghi', 'Gohir.A09G103232' => 'ghi', 'Gohir.A09G107601' => 'ghi', 'Gohir.A11G179832' => 'ghi', 'Gohir.A11G179998' => 'ghi', 'Gohir.A11G295125' => 'ghi', 'Gohir.A13G086470' => 'ghi', 'Gohir.D01G137751' => 'ghi', 'Gohir.D02G090033' => 'ghi', 'Gohir.D02G117554' => 'ghi', 'Gohir.D04G096628' => 'ghi', 'Gohir.D08G108608' => 'ghi', 'Gohir.D10G177500' => 'ghi', 'Gohir.D10G181800' => 'ghi', 'Gohir.D10G245316' => 'ghi', 'Gohir.D12G017000' => 'ghi', 'Gorai.004G116100' => 'gra', 'Gorai.005G077900' => 'gra', 'Gorai.005G100800' => 'gra', 'Gorai.005G170800' => 'gra', 'Gorai.008G017300' => 'gra', 'Gorai.011G198300' => 'gra', 'Gorai.011G203400' => 'gra', 'Gorai.011G282800' => 'gra', 'Gorai.012G049000' => 'gra', 'GSVIVG01002752001' => 'vvi', 'HanXRQChr00c0055g0571461' => 'han', 'HanXRQChr01g0009331' => 'han', 'HanXRQChr01g0017121' => 'han', 'HanXRQChr01g0027141' => 'han', 'HanXRQChr08g0224261' => 'han', 'HanXRQChr08g0236211' => 'han', 'HanXRQChr10g0297181' => 'han', 'HanXRQChr10g0305211' => 'han', 'HanXRQChr12g0367961' => 'han', 'HanXRQChr12g0367971' => 'han', 'HanXRQChr12g0370991' => 'han', 'HanXRQChr15g0488691' => 'han', 'HanXRQChr16g0504411' => 'han', 'HanXRQCPg0580291' => 'han', 'HanXRQCPg0580431' => 'han', 'HanXRQMTg0579641' => 'han', 'Haze_27062' => 'cav', 'Hma1.2p1_1244F.1_g270080' => 'hma', 'Hund07989' => 'sun', 'Hund08791' => 'sun', 'Hund20482' => 'sun', 'Hund22781' => 'sun', 'Hund23966' => 'sun', 'Hund27587' => 'sun', 'Hund27634' => 'sun', 'Hund27666' => 'sun', 'Hund27817' => 'sun', 'Hund27899' => 'sun', 'Hund27922' => 'sun', 'Hund28083' => 'sun', 'Hund28867' => 'sun', 'Hund28882' => 'sun', 'Hund28936' => 'sun', 'Hund28943' => 'sun', 'Hund28948' => 'sun', 'Hund28957' => 'sun', 'Hund28958' => 'sun', 'Hund28972' => 'sun', 'Hund28982' => 'sun', 'Hund29029' => 'sun', 'Hund29085' => 'sun', 'Hund29092' => 'sun', 'Hund29106' => 'sun', 'Hund29117' => 'sun', 'Hund29471' => 'sun', 'Hund29893' => 'sun', 'Hund30457' => 'sun', 'Hund30653' => 'sun', 'Hund30764' => 'sun', 'Hund30783' => 'sun', 'Hund30784' => 'sun', 'Hund30785' => 'sun', 'Hund30802' => 'sun', 'Hund30819' => 'sun', 'Hund30820' => 'sun', 'Hund30821' => 'sun', 'Hund30822' => 'sun', 'Hund30823' => 'sun', 'Hund30824' => 'sun', 'Hund30825' => 'sun', 'Hund30826' => 'sun', 'Hund30827' => 'sun', 'Hund30828' => 'sun', 'Hund30829' => 'sun', 'Hund30830' => 'sun', 'Hund30831' => 'sun', 'Hund30832' => 'sun', 'Hund30833' => 'sun', 'Hund30837' => 'sun', 'Hund30843' => 'sun', 'Hund30846' => 'sun', 'Hund30919' => 'sun', 'Hund30957' => 'sun', 'Hund30987' => 'sun', 'Hund30988' => 'sun', 'Hund31006' => 'sun', 'Hund31036' => 'sun', 'Hund31039' => 'sun', 'Hund31051' => 'sun', 'Hund31105' => 'sun', 'Lalb_Chr00c24g0406961' => 'lal', 'Lalb_Chr00c24g0406971' => 'lal', 'Lalb_Chr03g0038861' => 'lal', 'Lalb_Chr03g0038871' => 'lal', 'Lalb_Chr17g0337391' => 'lal', 'Lalb_Chr17g0337401' => 'lal', 'Lj2A1221T109' => 'lonja', 'LjContig00315g0013534' => 'lja', 'LjContig00315g0018892' => 'lja', 'Lsat_1_v5_gn_1_24001' => 'lsa', 'Lsat_1_v5_gn_1_95121' => 'lsa', 'Lsat_1_v5_gn_2_20620' => 'lsa', 'Lsat_1_v5_gn_4_116900' => 'lsa', 'Lsat_1_v5_gn_5_16521' => 'lsa', 'Lsat_1_v5_gn_5_16541' => 'lsa', 'Lsat_1_v5_gn_6_106840' => 'lsa', 'Lsat_1_v5_gn_7_341' => 'lsa', 'Lsat_1_v5_gn_8_97380' => 'lsa', 'Manes.06G021801' => 'mes', 'Manes.08G083670' => 'mes', 'Manes.09G011803' => 'mes', 'Mapoly0163s0017' => 'mpo', 'MBI05_g23316_MAGBIO' => 'mbi', 'MBI07_g03189_MAGBIO' => 'mbi', 'MBI08_g48230_MAGBIO' => 'mbi', 'MBI10_g41320_MAGBIO' => 'mbi', 'MBI10_g41321_MAGBIO' => 'mbi', 'MD05G1172200' => 'mdo', 'MD16G1012400' => 'mdo', 'Medtr0002s0280' => 'mtr', 'Medtr0082s0040' => 'mtr', 'Medtr0625s0020' => 'mtr', 'Medtr2g040140' => 'mtr', 'Medtr7g055840' => 'mtr', 'Medtr7g055910' => 'mtr', 'MELO3C000106.2' => 'cme', 'MELO3C003986.2' => 'cme', 'Migut.F01472' => 'egut', 'MSTRG.3525' => 'ama', 'MSTRG.3526' => 'ama', 'Nitab4.5_0000172g0450' => 'nta', 'Nitab4.5_0000172g0980' => 'nta', 'Nitab4.5_0000172g1180' => 'nta', 'Nitab4.5_0000172g1710' => 'nta', 'Nitab4.5_0000349g0200' => 'nta', 'Nitab4.5_0000692g0250' => 'nta', 'Nitab4.5_0000844g0170' => 'nta', 'Nitab4.5_0000844g0210' => 'nta', 'Nitab4.5_0000844g0260' => 'nta', 'Nitab4.5_0001170g0090' => 'nta', 'Nitab4.5_0001170g0100' => 'nta', 'Nitab4.5_0001348g0140' => 'nta', 'Nitab4.5_0001770g0040' => 'nta', 'Nitab4.5_0001770g0050' => 'nta', 'Nitab4.5_0001770g0060' => 'nta', 'Nitab4.5_0001788g0290' => 'nta', 'Nitab4.5_0001788g0300' => 'nta', 'Nitab4.5_0001788g0340' => 'nta', 'Nitab4.5_0001796g0230' => 'nta', 'Nitab4.5_0001796g0270' => 'nta', 'Nitab4.5_0002347g0060' => 'nta', 'Nitab4.5_0002716g0110' => 'nta', 'Nitab4.5_0003382g0070' => 'nta', 'Nitab4.5_0003713g0020' => 'nta', 'Nitab4.5_0004137g0060' => 'nta', 'Nitab4.5_0004721g0050' => 'nta', 'Nitab4.5_0005853g0070' => 'nta', 'Nitab4.5_0005853g0080' => 'nta', 'Nitab4.5_0006683g0140' => 'nta', 'Nitab4.5_0008835g0060' => 'nta', 'Nitab4.5_0009421g0030' => 'nta', 'Nitab4.5_0012234g0060' => 'nta', 'Nitab4.5_0016174g0030' => 'nta', 'Oeu002614.1' => 'oeu', 'Oeu038563.1' => 'oeu', 'Oeu040255.1' => 'oeu', 'Os12g0423142' => 'osa', 'Peaxi162Scf00001g04024' => 'pax', 'Peaxi162Scf00002g00218' => 'pax', 'Peaxi162Scf00489g00021' => 'pax', 'Peaxi162Scf00588g00111' => 'pax', 'PGR028G0006' => 'pgr', 'PGR028G0020' => 'pgr', 'PGR031G1129' => 'pgr', 'PGSC0003DMG400004141' => 'stu', 'PGSC0003DMG400021744' => 'stu', 'PGSC0003DMG400029876' => 'stu', 'Phvul.009G090248' => 'pvu', 'Potri.007G062001' => 'ptr', 'Potri.008G208300' => 'ptr', 'Pp3c21_8460' => 'ppa', 'Prupe.6G146800' => 'ppe', 'Psat0s4951g0160' => 'psa', 'PSO017G6547' => 'pso', 'PSO170G5129' => 'pso', 'PSO357G0201' => 'pso', 'PSO384G1460' => 'pso', 'QL93p0823_0004' => 'qlo', 'RcHm_v2.0_Chr5g0080691' => 'rch', 'RcHm_v2.0_Chr7g0201871' => 'rch', 'RcHm_v2.0_MTg0498381' => 'rch', 'RcHm_v2.0_MTg0498391' => 'rch', 'RhsimPtG0002900' => 'rsi', 'SabraMtG0001800' => 'sbr', 'SalBow1G0875' => 'sbo', 'SalBow1G2962' => 'sbo', 'SalBow1G5537' => 'sbo', 'SalBow1G5748' => 'sbo', 'SalBow1G6489' => 'sbo', 'SalBow1G6915' => 'sbo', 'SalBow1G7521' => 'sbo', 'SalBow2G0293' => 'sbo', 'Sc03g0005010' => 'sci', 'Sc04g0005510' => 'sci', 'Sc04g0005520' => 'sci', 'Sc16g0005190' => 'sci', 'Sc25g0005880' => 'sci', 'Sed0003644' => 'sed', 'Sed0019436' => 'sed', 'Sed0022288' => 'sed', 'Sed0024579' => 'sed', 'SEGI_23966' => 'sgi', 'SGA_v2.0_scaffold140G35498' => 'sas', 'SGA_v2.0_scaffold255G45400' => 'sas', 'SGA_v2.0_scaffold255G45513' => 'sas', 'SGA_v2.0_scaffold893G53704' => 'sas', 'SHI00829' => 'shi', 'SHI15029' => 'shi', 'SHI26649' => 'shi', 'SHI27347' => 'shi', 'SHI27348' => 'shi', 'SHI33930' => 'shi', 'SHI34220' => 'shi', 'SHI34613' => 'shi', 'SHI34614' => 'shi', 'SHI34630' => 'shi', 'SHI35190' => 'shi', 'SHI35326' => 'shi', 'SHI35334' => 'shi', 'SHI35455' => 'shi', 'SHI35457' => 'shi', 'SHI35980' => 'shi', 'SHI36142' => 'shi', 'SHI36266' => 'shi', 'SHI36368' => 'shi', 'SHI36369' => 'shi', 'SHI36383' => 'shi', 'SHI36567' => 'shi', 'SHI36581' => 'shi', 'SHI36629' => 'shi', 'SHI36771' => 'shi', 'SHI36782' => 'shi', 'SHI36935' => 'shi', 'SHI36966' => 'shi', 'SHI37065' => 'shi', 'SHI37617' => 'shi', 'SHI38206' => 'shi', 'SHI38210' => 'shi', 'SHI38315' => 'shi', 'SHI38566' => 'shi', 'SHI39119' => 'shi', 'SHI39476' => 'shi', 'SHI39477' => 'shi', 'SHI39752' => 'shi', 'SHI39777' => 'shi', 'SHI39812' => 'shi', 'SHI40461' => 'shi', 'SHI40932' => 'shi', 'SHI41240' => 'shi', 'SHI41241' => 'shi', 'SHI42173' => 'shi', 'SHI42503' => 'shi', 'SHI43533' => 'shi', 'SHI43781' => 'shi', 'SHI43970' => 'shi', 'SHI44576' => 'shi', 'SHI44670' => 'shi', 'SHI44671' => 'shi', 'SHI45144' => 'shi', 'SHI45925' => 'shi', 'SHI46090' => 'shi', 'SHI46259' => 'shi', 'SHI46260' => 'shi', 'SHI46908' => 'shi', 'SHI47712' => 'shi', 'SHI48150' => 'shi', 'SHI48307' => 'shi', 'SHI48750' => 'shi', 'SHI48751' => 'shi', 'SHI48902' => 'shi', 'SHI48903' => 'shi', 'SHI49107' => 'shi', 'SHI49108' => 'shi', 'SHI49663' => 'shi', 'SHI49748' => 'shi', 'SHI49794' => 'shi', 'SHI49994' => 'shi', 'SHI50386' => 'shi', 'SHI50512' => 'shi', 'SHI50625' => 'shi', 'SHI50801' => 'shi', 'SHI51105' => 'shi', 'SHI51228' => 'shi', 'SHI51612' => 'shi', 'SHI51658' => 'shi', 'SHI51700' => 'shi', 'SHI52150' => 'shi', 'SHI53045' => 'shi', 'SHI53190' => 'shi', 'SHI53369' => 'shi', 'SHI53372' => 'shi', 'SHI53577' => 'shi', 'SHI53781' => 'shi', 'SHI54131' => 'shi', 'SHI54160' => 'shi', 'SHI54219' => 'shi', 'SHI54388' => 'shi', 'SMO116G0334' => 'smo', 'SMO310G0002' => 'smo', 'SMO364G0929' => 'smo', 'Solyc00g500115.1' => 'sly', 'Solyc00g500225.1' => 'sly', 'Solyc00g500261.1' => 'sly', 'Solyc00g500361.1' => 'sly', 'Sopen00g002640' => 'spe', 'TAR365G0238' => 'tar', 'TAR636G2145' => 'tar', 'TPR.G36985' => 'tpr', 'TPR.G37274' => 'tpr', 'TWI32G1151' => 'twi', 'unitig_87.g28032' => 'ugi', 'unitig_91.g26487' => 'ugi', 'unitig_91.g26518' => 'ugi', 'VMungo0464G0583' => 'vmu', 'VMungo0580G0002' => 'vmu', 'VMungo1309G2626' => 'vmu' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001325', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001325' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001325', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '474', 'num_species' => '79' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001325' ) ), 'genes' => array( 'Aa31csc239G10' => 'aar', 'Aa31csc464G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1250' => 'aag', 'Ah.10g028160' => 'amhyb', 'AL3G44430' => 'aly', 'AL3G44440' => 'aly', 'Aqoxy12s029' => 'aox', 'Aqoxy12s039' => 'aox', 'Aqoxy4G02026' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TB2XJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2YD7KU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4LX9HH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6K92H0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALHF99' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D81V2I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGV151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G5DDSF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GG5HWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IEGY60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JN64LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KX3NGM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJZL7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q8C5RR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7VYQ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TPY4ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XXM48B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY6KWR' => 'arhy', 'AT2G07675' => 'ath', 'AT2G07751' => 'ath', 'ATCG00905' => 'ath', 'ATCG01230' => 'ath', 'ATMG00980' => 'ath', 'ATMG00990' => 'ath', 'ATR1169G002' => 'atr', 'Atru.chr3.4001' => 'acertr', 'Atru.chr4.739' => 'acertr', 'Atru.chr6.700' => 'acertr', 'BcaC05g26888' => 'bca', 'BNapus_Darmor_BZH_scaffold_147p00040' => 'bna', 'BNapus_Darmor_BZH_scaffold_234p00060' => 'bna', 'BolC2t10588H' => 'bol', 'BolSC28t60355H' => 'bol', 'BolSC28t60356H' => 'bol', 'BolSC29t60558H' => 'bol', 'BolSC29t60626H' => 'bol', 'BolSC35t60681H' => 'bol', 'BolSC35t60716H' => 'bol', 'BolSC37t60786H' => 'bol', 'BolSC45t60898H' => 'bol', 'BolSC45t60921H' => 'bol', 'BolSC47t61057H' => 'bol', 'BolSC47t61069H' => 'bol', 'BolSC49t61131H' => 'bol', 'BolSC49t61154H' => 'bol', 'BraSC103t45495Z' => 'bra', 'BraSC138t45523Z' => 'bra', 'BraSC143t45667Z' => 'bra', 'BraSC48t46255Z' => 'bra', 'BraSC48t46256Z' => 'bra', 'BraSC58t46451Z' => 'bra', 'BraSC59t46512Z' => 'bra', 'BraSC59t46559Z' => 'bra', 'BraSC77t46664Z' => 'bra', 'BraSC77t46665Z' => 'bra', 'C06p21310' => 'bna', 'C06p23120' => 'bna', 'C09p24710' => 'bna', 'CAN.G1741.3' => 'can', 'CAN.G266.7' => 'can', 'CAN.G351.18' => 'can', 'CAN.G889.5' => 'can', 'CANSAT25G2613' => 'cansat', 'CARHR282350' => 'chi', 'CARHR283240' => 'chi', 'CARHR283250' => 'chi', 'CARHR287250' => 'chi', 'CDE02G1246' => 'cde', 'CDE02G2710' => 'cde', 'CiPaw.08G042500' => 'cil', 'CiPaw.08G172200' => 'cil', 'CiPaw.08G173300' => 'cil', 'ClCG00G001510' => 'cla', 'COL.COLO4_01630' => 'col', 'COL.COLO4_02562' => 'col', 'COL.COLO4_03024' => 'col', 'COL.COLO4_03981' => 'col', 'COL.COLO4_04481' => 'col', 'Cpa.g.sc87.115' => 'cpa', 'Cre02.g144400' => 'cre', 'Cre08.g378900' => 'cre', 'CsaV3_1G007720' => 'csa', 'CsaV3_UNG208560' => 'csa', 'CsaV3_UNG210040' => 'csa', 'CSS0016656' => 'camsi', 'CSS0035753' => 'camsi', 'DCAR_016146' => 'dca', 'DCAR_032435' => 'dca', 'DCAR_032436' => 'dca', 'Duzib132G0580' => 'dzi', 'EL10Ac9g21012' => 'bvu', 'EL10As15g24102' => 'bvu', 'EL10As6g23662' => 'bvu', 'Eucgr.E00717' => 'egr', 'Eucgr.H01184' => 'egr', 'Eucgr.H03985' => 'egr', 'Eucgr.K01909' => 'egr', 'Eucgr.L01873' => 'egr', 'FAN03G1410' => 'fan', 'FAN06G1419' => 'fan', 'FAN06G2328' => 'fan', 'FAN08G2386' => 'fan', 'FAN10G4039' => 'fan', 'FAN13G1785' => 'fan', 'FAN18G4430' => 'fan', 'FAN21G0802' => 'fan', 'FvH4_5g00530' => 'fve', 'FvH4_7g21740' => 'fve', 'FvH4_c3g00110' => 'fve', 'Gohir.1Z050302' => 'ghi', 'Gohir.A01G071550' => 'ghi', 'Gohir.A01G143838' => 'ghi', 'Gohir.A02G100900' => 'ghi', 'Gohir.A03G020550' => 'ghi', 'Gohir.A03G089701' => 'ghi', 'Gohir.A03G116614' => 'ghi', 'Gohir.A04G039361' => 'ghi', 'Gohir.A04G061885' => 'ghi', 'Gohir.A04G062885' => 'ghi', 'Gohir.A05G323772' => 'ghi', 'Gohir.A08G093662' => 'ghi', 'Gohir.A08G123750' => 'ghi', 'Gohir.A09G045600' => 'ghi', 'Gohir.A09G045746' => 'ghi', 'Gohir.A09G103232' => 'ghi', 'Gohir.A09G107601' => 'ghi', 'Gohir.A11G179832' => 'ghi', 'Gohir.A11G179998' => 'ghi', 'Gohir.A11G295125' => 'ghi', 'Gohir.A13G086470' => 'ghi', 'Gohir.D01G137751' => 'ghi', 'Gohir.D02G090033' => 'ghi', 'Gohir.D02G117554' => 'ghi', 'Gohir.D04G096628' => 'ghi', 'Gohir.D08G108608' => 'ghi', 'Gohir.D10G177500' => 'ghi', 'Gohir.D10G181800' => 'ghi', 'Gohir.D10G245316' => 'ghi', 'Gohir.D12G017000' => 'ghi', 'Gorai.004G116100' => 'gra', 'Gorai.005G077900' => 'gra', 'Gorai.005G100800' => 'gra', 'Gorai.005G170800' => 'gra', 'Gorai.008G017300' => 'gra', 'Gorai.011G198300' => 'gra', 'Gorai.011G203400' => 'gra', 'Gorai.011G282800' => 'gra', 'Gorai.012G049000' => 'gra', 'GSVIVG01002752001' => 'vvi', 'HanXRQChr00c0055g0571461' => 'han', 'HanXRQChr01g0009331' => 'han', 'HanXRQChr01g0017121' => 'han', 'HanXRQChr01g0027141' => 'han', 'HanXRQChr08g0224261' => 'han', 'HanXRQChr08g0236211' => 'han', 'HanXRQChr10g0297181' => 'han', 'HanXRQChr10g0305211' => 'han', 'HanXRQChr12g0367961' => 'han', 'HanXRQChr12g0367971' => 'han', 'HanXRQChr12g0370991' => 'han', 'HanXRQChr15g0488691' => 'han', 'HanXRQChr16g0504411' => 'han', 'HanXRQCPg0580291' => 'han', 'HanXRQCPg0580431' => 'han', 'HanXRQMTg0579641' => 'han', 'Haze_27062' => 'cav', 'Hma1.2p1_1244F.1_g270080' => 'hma', 'Hund07989' => 'sun', 'Hund08791' => 'sun', 'Hund20482' => 'sun', 'Hund22781' => 'sun', 'Hund23966' => 'sun', 'Hund27587' => 'sun', 'Hund27634' => 'sun', 'Hund27666' => 'sun', 'Hund27817' => 'sun', 'Hund27899' => 'sun', 'Hund27922' => 'sun', 'Hund28083' => 'sun', 'Hund28867' => 'sun', 'Hund28882' => 'sun', 'Hund28936' => 'sun', 'Hund28943' => 'sun', 'Hund28948' => 'sun', 'Hund28957' => 'sun', 'Hund28958' => 'sun', 'Hund28972' => 'sun', 'Hund28982' => 'sun', 'Hund29029' => 'sun', 'Hund29085' => 'sun', 'Hund29092' => 'sun', 'Hund29106' => 'sun', 'Hund29117' => 'sun', 'Hund29471' => 'sun', 'Hund29893' => 'sun', 'Hund30457' => 'sun', 'Hund30653' => 'sun', 'Hund30764' => 'sun', 'Hund30783' => 'sun', 'Hund30784' => 'sun', 'Hund30785' => 'sun', 'Hund30802' => 'sun', 'Hund30819' => 'sun', 'Hund30820' => 'sun', 'Hund30821' => 'sun', 'Hund30822' => 'sun', 'Hund30823' => 'sun', 'Hund30824' => 'sun', 'Hund30825' => 'sun', 'Hund30826' => 'sun', 'Hund30827' => 'sun', 'Hund30828' => 'sun', 'Hund30829' => 'sun', 'Hund30830' => 'sun', 'Hund30831' => 'sun', 'Hund30832' => 'sun', 'Hund30833' => 'sun', 'Hund30837' => 'sun', 'Hund30843' => 'sun', 'Hund30846' => 'sun', 'Hund30919' => 'sun', 'Hund30957' => 'sun', 'Hund30987' => 'sun', 'Hund30988' => 'sun', 'Hund31006' => 'sun', 'Hund31036' => 'sun', 'Hund31039' => 'sun', 'Hund31051' => 'sun', 'Hund31105' => 'sun', 'Lalb_Chr00c24g0406961' => 'lal', 'Lalb_Chr00c24g0406971' => 'lal', 'Lalb_Chr03g0038861' => 'lal', 'Lalb_Chr03g0038871' => 'lal', 'Lalb_Chr17g0337391' => 'lal', 'Lalb_Chr17g0337401' => 'lal', 'Lj2A1221T109' => 'lonja', 'LjContig00315g0013534' => 'lja', 'LjContig00315g0018892' => 'lja', 'Lsat_1_v5_gn_1_24001' => 'lsa', 'Lsat_1_v5_gn_1_95121' => 'lsa', 'Lsat_1_v5_gn_2_20620' => 'lsa', 'Lsat_1_v5_gn_4_116900' => 'lsa', 'Lsat_1_v5_gn_5_16521' => 'lsa', 'Lsat_1_v5_gn_5_16541' => 'lsa', 'Lsat_1_v5_gn_6_106840' => 'lsa', 'Lsat_1_v5_gn_7_341' => 'lsa', 'Lsat_1_v5_gn_8_97380' => 'lsa', 'Manes.06G021801' => 'mes', 'Manes.08G083670' => 'mes', 'Manes.09G011803' => 'mes', 'Mapoly0163s0017' => 'mpo', 'MBI05_g23316_MAGBIO' => 'mbi', 'MBI07_g03189_MAGBIO' => 'mbi', 'MBI08_g48230_MAGBIO' => 'mbi', 'MBI10_g41320_MAGBIO' => 'mbi', 'MBI10_g41321_MAGBIO' => 'mbi', 'MD05G1172200' => 'mdo', 'MD16G1012400' => 'mdo', 'Medtr0002s0280' => 'mtr', 'Medtr0082s0040' => 'mtr', 'Medtr0625s0020' => 'mtr', 'Medtr2g040140' => 'mtr', 'Medtr7g055840' => 'mtr', 'Medtr7g055910' => 'mtr', 'MELO3C000106.2' => 'cme', 'MELO3C003986.2' => 'cme', 'Migut.F01472' => 'egut', 'MSTRG.3525' => 'ama', 'MSTRG.3526' => 'ama', 'Nitab4.5_0000172g0450' => 'nta', 'Nitab4.5_0000172g0980' => 'nta', 'Nitab4.5_0000172g1180' => 'nta', 'Nitab4.5_0000172g1710' => 'nta', 'Nitab4.5_0000349g0200' => 'nta', 'Nitab4.5_0000692g0250' => 'nta', 'Nitab4.5_0000844g0170' => 'nta', 'Nitab4.5_0000844g0210' => 'nta', 'Nitab4.5_0000844g0260' => 'nta', 'Nitab4.5_0001170g0090' => 'nta', 'Nitab4.5_0001170g0100' => 'nta', 'Nitab4.5_0001348g0140' => 'nta', 'Nitab4.5_0001770g0040' => 'nta', 'Nitab4.5_0001770g0050' => 'nta', 'Nitab4.5_0001770g0060' => 'nta', 'Nitab4.5_0001788g0290' => 'nta', 'Nitab4.5_0001788g0300' => 'nta', 'Nitab4.5_0001788g0340' => 'nta', 'Nitab4.5_0001796g0230' => 'nta', 'Nitab4.5_0001796g0270' => 'nta', 'Nitab4.5_0002347g0060' => 'nta', 'Nitab4.5_0002716g0110' => 'nta', 'Nitab4.5_0003382g0070' => 'nta', 'Nitab4.5_0003713g0020' => 'nta', 'Nitab4.5_0004137g0060' => 'nta', 'Nitab4.5_0004721g0050' => 'nta', 'Nitab4.5_0005853g0070' => 'nta', 'Nitab4.5_0005853g0080' => 'nta', 'Nitab4.5_0006683g0140' => 'nta', 'Nitab4.5_0008835g0060' => 'nta', 'Nitab4.5_0009421g0030' => 'nta', 'Nitab4.5_0012234g0060' => 'nta', 'Nitab4.5_0016174g0030' => 'nta', 'Oeu002614.1' => 'oeu', 'Oeu038563.1' => 'oeu', 'Oeu040255.1' => 'oeu', 'Os12g0423142' => 'osa', 'Peaxi162Scf00001g04024' => 'pax', 'Peaxi162Scf00002g00218' => 'pax', 'Peaxi162Scf00489g00021' => 'pax', 'Peaxi162Scf00588g00111' => 'pax', 'PGR028G0006' => 'pgr', 'PGR028G0020' => 'pgr', 'PGR031G1129' => 'pgr', 'PGSC0003DMG400004141' => 'stu', 'PGSC0003DMG400021744' => 'stu', 'PGSC0003DMG400029876' => 'stu', 'Phvul.009G090248' => 'pvu', 'Potri.007G062001' => 'ptr', 'Potri.008G208300' => 'ptr', 'Pp3c21_8460' => 'ppa', 'Prupe.6G146800' => 'ppe', 'Psat0s4951g0160' => 'psa', 'PSO017G6547' => 'pso', 'PSO170G5129' => 'pso', 'PSO357G0201' => 'pso', 'PSO384G1460' => 'pso', 'QL93p0823_0004' => 'qlo', 'RcHm_v2.0_Chr5g0080691' => 'rch', 'RcHm_v2.0_Chr7g0201871' => 'rch', 'RcHm_v2.0_MTg0498381' => 'rch', 'RcHm_v2.0_MTg0498391' => 'rch', 'RhsimPtG0002900' => 'rsi', 'SabraMtG0001800' => 'sbr', 'SalBow1G0875' => 'sbo', 'SalBow1G2962' => 'sbo', 'SalBow1G5537' => 'sbo', 'SalBow1G5748' => 'sbo', 'SalBow1G6489' => 'sbo', 'SalBow1G6915' => 'sbo', 'SalBow1G7521' => 'sbo', 'SalBow2G0293' => 'sbo', 'Sc03g0005010' => 'sci', 'Sc04g0005510' => 'sci', 'Sc04g0005520' => 'sci', 'Sc16g0005190' => 'sci', 'Sc25g0005880' => 'sci', 'Sed0003644' => 'sed', 'Sed0019436' => 'sed', 'Sed0022288' => 'sed', 'Sed0024579' => 'sed', 'SEGI_23966' => 'sgi', 'SGA_v2.0_scaffold140G35498' => 'sas', 'SGA_v2.0_scaffold255G45400' => 'sas', 'SGA_v2.0_scaffold255G45513' => 'sas', 'SGA_v2.0_scaffold893G53704' => 'sas', 'SHI00829' => 'shi', 'SHI15029' => 'shi', 'SHI26649' => 'shi', 'SHI27347' => 'shi', 'SHI27348' => 'shi', 'SHI33930' => 'shi', 'SHI34220' => 'shi', 'SHI34613' => 'shi', 'SHI34614' => 'shi', 'SHI34630' => 'shi', 'SHI35190' => 'shi', 'SHI35326' => 'shi', 'SHI35334' => 'shi', 'SHI35455' => 'shi', 'SHI35457' => 'shi', 'SHI35980' => 'shi', 'SHI36142' => 'shi', 'SHI36266' => 'shi', 'SHI36368' => 'shi', 'SHI36369' => 'shi', 'SHI36383' => 'shi', 'SHI36567' => 'shi', 'SHI36581' => 'shi', 'SHI36629' => 'shi', 'SHI36771' => 'shi', 'SHI36782' => 'shi', 'SHI36935' => 'shi', 'SHI36966' => 'shi', 'SHI37065' => 'shi', 'SHI37617' => 'shi', 'SHI38206' => 'shi', 'SHI38210' => 'shi', 'SHI38315' => 'shi', 'SHI38566' => 'shi', 'SHI39119' => 'shi', 'SHI39476' => 'shi', 'SHI39477' => 'shi', 'SHI39752' => 'shi', 'SHI39777' => 'shi', 'SHI39812' => 'shi', 'SHI40461' => 'shi', 'SHI40932' => 'shi', 'SHI41240' => 'shi', 'SHI41241' => 'shi', 'SHI42173' => 'shi', 'SHI42503' => 'shi', 'SHI43533' => 'shi', 'SHI43781' => 'shi', 'SHI43970' => 'shi', 'SHI44576' => 'shi', 'SHI44670' => 'shi', 'SHI44671' => 'shi', 'SHI45144' => 'shi', 'SHI45925' => 'shi', 'SHI46090' => 'shi', 'SHI46259' => 'shi', 'SHI46260' => 'shi', 'SHI46908' => 'shi', 'SHI47712' => 'shi', 'SHI48150' => 'shi', 'SHI48307' => 'shi', 'SHI48750' => 'shi', 'SHI48751' => 'shi', 'SHI48902' => 'shi', 'SHI48903' => 'shi', 'SHI49107' => 'shi', 'SHI49108' => 'shi', 'SHI49663' => 'shi', 'SHI49748' => 'shi', 'SHI49794' => 'shi', 'SHI49994' => 'shi', 'SHI50386' => 'shi', 'SHI50512' => 'shi', 'SHI50625' => 'shi', 'SHI50801' => 'shi', 'SHI51105' => 'shi', 'SHI51228' => 'shi', 'SHI51612' => 'shi', 'SHI51658' => 'shi', 'SHI51700' => 'shi', 'SHI52150' => 'shi', 'SHI53045' => 'shi', 'SHI53190' => 'shi', 'SHI53369' => 'shi', 'SHI53372' => 'shi', 'SHI53577' => 'shi', 'SHI53781' => 'shi', 'SHI54131' => 'shi', 'SHI54160' => 'shi', 'SHI54219' => 'shi', 'SHI54388' => 'shi', 'SMO116G0334' => 'smo', 'SMO310G0002' => 'smo', 'SMO364G0929' => 'smo', 'Solyc00g500115.1' => 'sly', 'Solyc00g500225.1' => 'sly', 'Solyc00g500261.1' => 'sly', 'Solyc00g500361.1' => 'sly', 'Sopen00g002640' => 'spe', 'TAR365G0238' => 'tar', 'TAR636G2145' => 'tar', 'TPR.G36985' => 'tpr', 'TPR.G37274' => 'tpr', 'TWI32G1151' => 'twi', 'unitig_87.g28032' => 'ugi', 'unitig_91.g26487' => 'ugi', 'unitig_91.g26518' => 'ugi', 'VMungo0464G0583' => 'vmu', 'VMungo0580G0002' => 'vmu', 'VMungo1309G2626' => 'vmu' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001325' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001325' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001325' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001325' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151