Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 0.0e+00 1425.2 705 100.0
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 0.0e+00 1222.2 704 86.8
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 0.0e+00 1220.7 704 86.5
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 0.0e+00 1218.8 702 86.3
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 0.0e+00 1208.4 703 85.1
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 0.0e+00 1200.3 707 84.2
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 0.0e+00 1196.0 709 84.1
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 0.0e+00 1194.9 709 84.2
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 0.0e+00 1184.9 708 83.8
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 0.0e+00 1175.2 699 84.0
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 0.0e+00 1157.9 699 83.4
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 0.0e+00 1157.5 709 80.5
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 3.8e-307 1057.7 680 79.0
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 1.5e-303 1045.8 704 71.7
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 2.5e-303 1045.0 703 71.4
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 2.5e-303 1045.0 702 72.4
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 4.3e-303 1044.3 704 72.0
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 5.6e-303 1043.9 698 71.6
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 1.6e-302 1042.3 707 71.7
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 6.2e-302 1040.4 703 71.6
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 2.4e-301 1038.5 697 72.5
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 2.4e-301 1038.5 699 72.0
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 3.1e-301 1038.1 699 71.7
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 5.8e-300 1033.9 708 71.5
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 1.3e-299 1032.7 705 71.9
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.4e-298 1029.2 708 72.2
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 4.2e-298 1027.7 705 71.2
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 9.3e-298 1026.5 708 72.5
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 1.2e-297 1026.2 700 71.1
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.2e-297 1026.2 708 72.3
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 2.1e-297 1025.4 706 71.5
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 3.5e-297 1024.6 706 71.7
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.3e-296 1022.7 708 72.2
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 1.8e-296 1022.3 698 71.6
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 2.5e-295 1018.5 706 70.3
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 6.3e-294 1013.8 697 70.9
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 8.2e-294 1013.4 697 71.2
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 1.1e-293 1013.1 692 70.7
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 1.4e-293 1012.7 706 70.1
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 3.1e-293 1011.5 704 70.5
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 5.3e-293 1010.7 707 70.2
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 1.2e-292 1009.6 696 70.1
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 2.6e-292 1008.4 705 68.4
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 1.0e-291 1006.5 703 70.6
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 1.3e-291 1006.1 699 69.8
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 2.2e-291 1005.4 703 70.6
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 2.9e-291 1005.0 702 69.8
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 2.9e-291 1005.0 707 69.6
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 8.4e-291 1003.4 707 69.3
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 1.1e-290 1003.0 692 70.1
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 4.2e-290 1001.1 692 69.9
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 5.5e-290 1000.7 697 70.0
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 1.0e-288 996.5 709 69.8
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 1.3e-288 996.1 705 69.4
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 2.3e-288 995.3 698 69.8
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 2.3e-288 995.3 695 70.4
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 3.0e-288 995.0 698 70.3
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.1e-287 993.0 705 68.7
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 5.7e-287 990.7 702 68.4
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 1.3e-286 989.6 703 69.4
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 3.7e-286 988.0 701 69.2
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 4.8e-286 987.6 697 69.3
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 6.3e-286 987.3 708 68.6
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 8.2e-286 986.9 702 68.5
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 2.0e-284 982.2 701 69.2
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 2.0e-284 982.2 702 69.1
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 2.0e-284 982.2 787 62.8
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 2.0e-284 982.2 703 68.3
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 2.9e-283 978.4 713 67.6
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 4.2e-282 974.5 697 68.4
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 1.2e-281 973.0 716 66.8
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 6.1e-281 970.7 729 66.5
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 5.1e-280 967.6 705 67.1
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 3.3e-279 964.9 729 66.9
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 1.3e-278 963.0 723 65.7
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.4e-277 958.7 714 66.5
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 6.9e-277 957.2 698 67.6
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 7.7e-276 953.7 693 66.4
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 2.9e-275 951.8 692 66.9
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 3.8e-275 951.4 655 70.5
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 9.4e-274 946.8 698 67.0
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 2.3e-272 942.2 701 66.0
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 2.0e-271 939.1 779 61.6
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 1.5e-263 912.9 704 65.1
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 5.7e-263 911.0 710 64.8
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 3.1e-261 905.2 696 63.6
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 1.2e-260 903.3 758 60.0
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 2.7e-257 892.1 712 62.4
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 3.7e-254 881.7 706 63.9
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 3.5e-252 875.2 588 71.9
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.9e-250 869.4 712 60.8
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 5.2e-248 861.3 593 70.2
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 2.0e-244 849.4 710 59.9
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 6.4e-238 827.8 563 71.8
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 1.0e-235 820.5 701 59.9
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 5.4e-229 798.1 541 70.6
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 7.0e-229 797.7 706 58.4
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 4.7e-217 758.4 516 71.9
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 8.1e-201 704.5 702 50.7
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 3.8e-198 695.7 698 51.1
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 4.5e-191 672.2 697 50.5
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 2.5e-181 639.8 884 41.1
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 1.0e-179 634.4 736 49.2
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 1.3e-171 607.4 850 41.1
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.9e-170 603.6 441 66.7
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 9.7e-162 574.7 692 46.7
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 2.5e-157 560.1 380 70.8
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 1.2e-156 557.8 496 56.2
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 6.5e-150 535.4 749 42.3
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 1.3e-142 511.1 727 41.5
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 6.3e-137 492.3 742 39.4
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 4.0e-131 473.0 703 38.7
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 5.0e-126 456.1 814 37.5
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.3e-105 388.3 305 66.6
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 1.6e-100 371.3 327 59.0
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 2.0e-98 364.4 354 53.4
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 5.6e-77 293.1 310 51.6
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.3e-70 271.9 201 67.2
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 2.2e-57 228.0 201 61.7
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.9e-56 224.9 164 67.7
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 2.6e-50 204.5 132 72.7
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 1.0e-38 166.0 102 78.4
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 1.0e-33 149.4 201 45.8
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 3.8e-33 147.5 120 56.7
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 5.0e-33 147.1 105 65.7
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 4.4e-29 134.0 143 51.0
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 5.3e-27 127.1 99 66.7
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 5.7e-21 107.1 96 58.3
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 1.4e-19 102.4 161 44.1
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 3.1e-19 101.3 69 68.1
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 1.3e-17 95.9 57 80.7
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 2.3e-14 85.1 62 67.7
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 7.5e-13 80.1 46 80.4
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 2.0e-10 72.0 42 78.6
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 3.6e-07 61.2 58 46.6


User provided reference genes

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