Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG9G5630 Aethionema arabicum HOM05D008317 ORTHO05D010808 2.9e-111 405.2 200 100.0
Aa31sc15G70 Aethionema arabicum HOM05D008317 ORTHO05D010808 1.2e-96 356.7 205 85.9
Aa31sc15G30 Aethionema arabicum HOM05D008317 ORTHO05D010808 4.6e-93 344.7 210 82.4
Aa31sc15G80 Aethionema arabicum HOM05D008317 ORTHO05D010808 3.3e-91 338.6 204 84.3
Thhalv10003018m.g Eutrema salsugineum HOM05D008317 ORTHO05D010808 4.3e-30 135.6 198 41.9
AL4G14960 Arabidopsis lyrata HOM05D008317 ORTHO05D010808 1.3e-26 124.0 209 38.8
AT5G43200 Arabidopsis thaliana HOM05D008317 ORTHO05D010808 6.4e-26 121.7 212 38.2
AT2G24480 Arabidopsis thaliana HOM05D008317 ORTHO05D010808 5.4e-25 118.6 205 38.0
AL8G17380 Arabidopsis lyrata HOM05D008317 ORTHO05D010808 1.3e-23 114.0 210 35.2
Carub.0004s0382 Capsella rubella HOM05D008317 ORTHO05D010808 1.5e-22 110.5 204 37.3
AL4G15690 Arabidopsis lyrata HOM05D008317 ORTHO05D010808 1.9e-22 110.2 203 36.0
AL4G18590 Arabidopsis lyrata HOM05D008317 ORTHO05D010808 8.1e-21 104.8 209 34.9
AT3G28620 Arabidopsis thaliana HOM05D008317 ORTHO05D010808 8.1e-21 104.8 215 35.3
BraA04t17491Z Brassica rapa HOM05D008317 ORTHO05D010808 5.8e-19 98.6 201 33.8
AL4G14890 Arabidopsis lyrata HOM05D001404 ORTHO05D010808 4.9e-18 95.5 138 39.9
Aa31LG5G16710 Aethionema arabicum HOM05D008374 ORTHO05D010264 4.1e-17 92.4 188 34.6
BcaB06g27971 Brassica carinata HOM05D008317 ORTHO05D010808 7.1e-17 91.7 204 32.8
AL4G17000 Arabidopsis lyrata HOM05D008317 ORTHO05D012776 2.7e-16 89.7 205 32.2
BcaC07g40929 Brassica carinata HOM05D008317 ORTHO05D010808 2.7e-16 89.7 203 33.5
CARHR215830 Cardamine hirsuta HOM05D008374 ORTHO05D010264 4.6e-16 89.0 212 31.1
C04p54070 Brassica napus HOM05D008317 ORTHO05D010808 6.0e-16 88.6 201 33.3
BcaC02g08453 Brassica carinata HOM05D008317 ORTHO05D010808 7.8e-16 88.2 201 33.3
Thhalv10028356m.g Eutrema salsugineum HOM05D008374 ORTHO05D010264 1.7e-15 87.0 227 31.7
Thhalv10029195m.g Eutrema salsugineum HOM05D008374 ORTHO05D010264 1.7e-15 87.0 227 31.7
BcaC08g43065 Brassica carinata HOM05D015942 ORTHO05D015884 3.0e-15 86.3 197 35.5
C06p03240 Brassica napus HOM05D015942 ORTHO05D015884 3.0e-15 86.3 197 35.5
Carub.0004s0421 Capsella rubella HOM05D008317 ORTHO05D010808 5.1e-15 85.5 207 30.9
BraA04t17492Z Brassica rapa HOM05D008317 ORTHO05D010808 6.6e-15 85.1 201 33.3
Sp4g03480 Schrenkiella parvula HOM05D008317 ORTHO05D010808 6.6e-15 85.1 201 31.3
A04p18900 Brassica napus HOM05D008317 ORTHO05D010808 8.6e-15 84.7 201 33.3
BolC6t35455H Brassica oleracea HOM05D015942 ORTHO05D015884 1.5e-14 84.0 197 35.0
AT3G42940 Arabidopsis thaliana HOM05D008317 ORTHO05D010808 1.9e-14 83.6 190 33.2
Aa31LG9G6500 Aethionema arabicum HOM05D008374 ORTHO05D010264 2.8e-13 79.7 216 31.0
THA.LOC104811308 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 2.8e-13 79.7 219 28.8
THA.LOC104811309 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 2.8e-13 79.7 158 31.6
A09p55570 Brassica napus HOM05D008317 ORTHO05D012776 4.7e-13 79.0 146 30.8
BraA09t40959Z Brassica rapa HOM05D008317 ORTHO05D012776 4.7e-13 79.0 146 30.8
THA.LOC104811310 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 6.2e-13 78.6 219 29.2
AT5G37270 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 2.4e-12 76.6 197 33.5
Aa31LG9G7110 Aethionema arabicum HOM05D008374 ORTHO05D010264 5.2e-12 75.5 146 32.9
AL4G14950 Arabidopsis lyrata HOM05D008317 ORTHO05D010808 5.2e-12 75.5 122 37.7
Aa31LG9G6480 Aethionema arabicum HOM05D008374 ORTHO05D010264 8.9e-12 74.7 149 34.9
BcaB08g35193 Brassica carinata HOM05D008317 ORTHO05D012776 8.9e-12 74.7 141 30.5
AT5G37250 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 1.5e-11 73.9 200 32.0
AT5G37280 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 2.0e-11 73.6 215 28.4
AL7G45690 Arabidopsis lyrata HOM05D008374 ORTHO05D010264 2.6e-11 73.2 220 29.1
AT5G37230 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 4.4e-11 72.4 196 30.6
A04p10810 Brassica napus HOM05D008374 ORTHO05D010264 4.4e-11 72.4 180 28.9
BraA04t16748Z Brassica rapa HOM05D008374 ORTHO05D010264 4.4e-11 72.4 180 28.9
C04p44560 Brassica napus HOM05D008374 ORTHO05D010264 9.9e-11 71.2 172 29.7
AT4G12150 Arabidopsis thaliana HOM05D008302 ORTHO05D000038 1.3e-10 70.9 206 25.7
BcaC02g09597 Brassica carinata HOM05D008374 ORTHO05D010264 2.9e-10 69.7 172 29.1
BcaC02g09599 Brassica carinata HOM05D008374 ORTHO05D010264 2.9e-10 69.7 172 29.1
C04p44530 Brassica napus HOM05D008374 ORTHO05D010264 2.9e-10 69.7 172 29.1
BolC4t26025H Brassica oleracea HOM05D008374 ORTHO05D010264 2.9e-10 69.7 172 29.1
BolC4t26028H Brassica oleracea HOM05D008374 ORTHO05D010264 2.9e-10 69.7 172 29.1
Sp6g06800 Schrenkiella parvula HOM05D008374 ORTHO05D010264 3.8e-10 69.3 214 30.8
BcaC07g40858 Brassica carinata HOM05D008317 ORTHO05D012776 4.9e-10 68.9 147 28.6
BcaC07g40927 Brassica carinata HOM05D015942 ORTHO05D015884 1.4e-09 67.4 179 31.8
C08p39220 Brassica napus HOM05D015942 ORTHO05D015884 1.4e-09 67.4 179 31.8
BolC8t51495H Brassica oleracea HOM05D015942 ORTHO05D015884 1.4e-09 67.4 179 31.8
C04p54130 Brassica napus HOM05D008317 ORTHO05D010808 1.9e-09 67.0 176 29.5
BolC4t26965H Brassica oleracea HOM05D008317 ORTHO05D010808 1.9e-09 67.0 176 29.5
Sp6g10420 Schrenkiella parvula HOM05D008374 ORTHO05D010264 2.4e-09 66.6 214 31.3
MELO3C013477.2 Cucumis melo HOM05D052995 ORTHO05D000557 3.2e-09 66.2 55 50.9
Thhalv10029381m.g Eutrema salsugineum HOM05D008302 ORTHO05D000038 5.4e-09 65.5 180 30.6
Aa31sc36G20 Aethionema arabicum HOM05D012539 ORTHO05D000038 1.6e-08 63.9 56 53.6
Thhalv10029147m.g Eutrema salsugineum HOM05D008302 ORTHO05D016783 2.1e-08 63.5 81 43.2
Aa31sc389G40 Aethionema arabicum HOM05D008374 ORTHO05D010264 2.7e-08 63.2 99 39.4
THA.LOC104808913 Tarenaya hassleriana HOM05D000082 ORTHO05D010264 2.7e-08 63.2 224 25.0
AL6G47080 Arabidopsis lyrata HOM05D008302 ORTHO05D000038 3.5e-08 62.8 205 29.8
Aa31LG9G6790 Aethionema arabicum HOM05D008374 ORTHO05D010264 4.6e-08 62.4 52 53.8
Carub.0007s3282 Capsella rubella HOM05D008374 ORTHO05D010264 4.6e-08 62.4 140 29.3
Thhalv10028317m.g Eutrema salsugineum HOM05D008374 ORTHO05D010264 4.6e-08 62.4 152 29.6
HanXRQChr05g0146871 Helianthus annuus HOM05D000341 ORTHO05D000557 4.6e-08 62.4 92 35.9
AL7G45680 Arabidopsis lyrata HOM05D008374 ORTHO05D010264 7.8e-08 61.6 204 27.5
HanXRQChr05g0146851 Helianthus annuus HOM05D000341 ORTHO05D000557 7.8e-08 61.6 62 41.9
BcaC02g08445 Brassica carinata HOM05D008317 ORTHO05D010808 1.0e-07 61.2 198 27.3
Thhalv10028290m.g Eutrema salsugineum HOM05D008374 ORTHO05D010264 1.0e-07 61.2 60 50.0
EL10Ac2g04176 Beta vulgaris HOM05D016861 ORTHO05D018265 1.7e-07 60.5 127 31.5
HanXRQChr05g0146861 Helianthus annuus HOM05D000341 ORTHO05D000557 1.7e-07 60.5 61 42.6
AT1G57730 Arabidopsis thaliana HOM05D009340 ORTHO05D011957 2.3e-07 60.1 134 26.1
Mapoly0044s0014 Marchantia polymorpha HOM05D000341 ORTHO05D000557 2.3e-07 60.1 86 33.7
Aa31LG1G19820 Aethionema arabicum HOM05D012539 ORTHO05D000038 3.0e-07 59.7 211 28.9
AT5G37200 Arabidopsis thaliana HOM05D008374 ORTHO05D010264 3.0e-07 59.7 222 29.3
BcaC02g09601 Brassica carinata HOM05D008374 ORTHO05D010264 3.0e-07 59.7 52 48.1
BolC4t26027H Brassica oleracea HOM05D008374 ORTHO05D010264 3.0e-07 59.7 52 48.1
Lsat_1_v5_gn_6_82980 Lactuca sativa HOM05D000341 ORTHO05D000557 3.9e-07 59.3 149 29.5
Mapoly0054s0062 Marchantia polymorpha HOM05D000341 ORTHO05D000557 3.9e-07 59.3 52 44.2
THA.LOC104808919 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 3.9e-07 59.3 61 47.5
Ah.07g196480 Amaranthus hybridus HOM05D000341 ORTHO05D000557 5.1e-07 58.9 133 26.3
EL10Ac9g21564 Beta vulgaris HOM05D010671 ORTHO05D013417 5.1e-07 58.9 51 47.1
EL10Ac9g21565 Beta vulgaris HOM05D010671 ORTHO05D013417 5.1e-07 58.9 63 46.0
BcaB06g27976 Brassica carinata HOM05D008317 ORTHO05D010808 5.1e-07 58.9 117 32.5
BcaC02g08446 Brassica carinata HOM05D008317 ORTHO05D010808 5.1e-07 58.9 117 32.5
BcaB06g27982 Brassica carinata HOM05D008317 ORTHO05D010808 6.6e-07 58.5 205 31.2
BcaC06g36080 Brassica carinata HOM05D008374 ORTHO05D010264 6.6e-07 58.5 57 45.6
C07p08070 Brassica napus HOM05D008374 ORTHO05D010264 6.6e-07 58.5 57 45.6
BolC7t41225H Brassica oleracea HOM05D008374 ORTHO05D010264 6.6e-07 58.5 57 45.6
Mapoly0045s0150 Marchantia polymorpha HOM05D000157 ORTHO05D000557 6.6e-07 58.5 85 30.6
EL10Ac7g17595 Beta vulgaris HOM05D016861 ORTHO05D018265 8.7e-07 58.2 128 32.8
BcaC02g09598 Brassica carinata HOM05D008374 ORTHO05D010264 8.7e-07 58.2 139 31.7
BcaC02g09600 Brassica carinata HOM05D008374 ORTHO05D010264 8.7e-07 58.2 139 31.7
A04p10820 Brassica napus HOM05D008374 ORTHO05D010264 8.7e-07 58.2 185 26.5
BolC4t26030H Brassica oleracea HOM05D008374 ORTHO05D010264 8.7e-07 58.2 139 31.7
BraA04t16749Z Brassica rapa HOM05D008374 ORTHO05D010264 8.7e-07 58.2 185 26.5
Cpa.g.sc20.15 Carica papaya HOM05D000082 ORTHO05D018908 8.7e-07 58.2 53 50.9
Hma1.2p1_0702F.1_g206145 Hydrangea macrophylla HOM05D000341 ORTHO05D000557 8.7e-07 58.2 105 31.4
THA.LOC104809116 Tarenaya hassleriana HOM05D008302 ORTHO05D010264 8.7e-07 58.2 61 47.5
PGR044G0297 Punica granatum HOM05D000082 ORTHO05D030517 1.1e-06 57.8 66 43.9
Sp3g29000 Schrenkiella parvula HOM05D008374 ORTHO05D010264 1.1e-06 57.8 51 51.0
AT2G24460 Arabidopsis thaliana HOM05D008317 ORTHO05D010808 1.5e-06 57.4 137 34.3
TAR629G0661 Trochodendron aralioides HOM05D000341 ORTHO05D000557 1.5e-06 57.4 108 29.6
AL4G14900 Arabidopsis lyrata HOM05D008317 ORTHO05D010808 1.9e-06 57.0 107 35.5
A07p03260 Brassica napus HOM05D001172 ORTHO05D001128 1.9e-06 57.0 82 34.1
A07p05080 Brassica napus HOM05D008374 ORTHO05D010264 1.9e-06 57.0 50 50.0
BraA07t28300Z Brassica rapa HOM05D008374 ORTHO05D010264 1.9e-06 57.0 50 50.0
Sed0021279 Sechium edule HOM05D000341 ORTHO05D000557 1.9e-06 57.0 61 44.3
THA.LOC104809115 Tarenaya hassleriana HOM05D000082 ORTHO05D010264 1.9e-06 57.0 219 26.5
Aa31LG3G8360 Aethionema arabicum HOM05D012539 ORTHO05D000038 2.5e-06 56.6 56 48.2
AL6G47060 Arabidopsis lyrata HOM05D008302 ORTHO05D000038 2.5e-06 56.6 204 25.0
BcaB03g16317 Brassica carinata HOM05D008374 ORTHO05D010264 2.5e-06 56.6 51 49.0
A09p45330 Brassica napus HOM05D002519 ORTHO05D002747 2.5e-06 56.6 76 40.8
BraA07t28126Z Brassica rapa HOM05D001172 ORTHO05D001128 2.5e-06 56.6 82 34.1
PGR031G2124 Punica granatum HOM05D001172 ORTHO05D001128 2.5e-06 56.6 63 42.9
Sabra02G0128900 Salix brachista HOM05D000341 ORTHO05D000557 2.5e-06 56.6 91 29.7
Sopen00g010260 Solanum pennellii HOM05D000341 ORTHO05D000557 2.5e-06 56.6 51 49.0
THA.LOC104809112 Tarenaya hassleriana HOM05D000082 ORTHO05D010264 2.5e-06 56.6 219 26.5
THA.LOC104809113 Tarenaya hassleriana HOM05D000082 ORTHO05D010264 2.5e-06 56.6 219 26.5
TAR381G0289 Trochodendron aralioides HOM05D001172 ORTHO05D001128 2.5e-06 56.6 74 39.2
arahy.Tifrunner.gnm1.ann1.6C8X0F Arachis hypogaea HOM05D001172 ORTHO05D001128 3.3e-06 56.2 81 35.8
BcaB06g27118 Brassica carinata HOM05D008374 ORTHO05D010264 3.3e-06 56.2 182 27.5
Cpa.g.sc26.126 Carica papaya HOM05D000082 ORTHO05D000038 3.3e-06 56.2 50 50.0
Cfa024782 Carpinus fangiana HOM05D000341 ORTHO05D000557 3.3e-06 56.2 55 45.5
PSO210G6221 Papaver somniferum HOM05D001172 ORTHO05D001128 3.3e-06 56.2 75 38.7
PGR042G1251 Punica granatum HOM05D000341 ORTHO05D000557 3.3e-06 56.2 56 48.2
PGSC0003DMG400024775 Solanum tuberosum HOM05D027681 ORTHO05D025908 3.3e-06 56.2 57 42.1
TAR376G0368 Trochodendron aralioides HOM05D001172 ORTHO05D001128 3.3e-06 56.2 67 41.8
TAR381G1424 Trochodendron aralioides HOM05D001172 ORTHO05D001128 3.3e-06 56.2 74 39.2
TAR625G0800 Trochodendron aralioides HOM05D000373 ORTHO05D001128 3.3e-06 56.2 67 40.3
Ah.14g088030 Amaranthus hybridus HOM05D001172 ORTHO05D001128 4.3e-06 55.8 149 28.9
Phvul.L002302 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 4.3e-06 55.8 53 45.3
Potri.005G113200 Populus trichocarpa HOM05D002398 ORTHO05D013111 4.3e-06 55.8 79 38.0
Rhsim10G0206300 Rhododendron simsii HOM05D001172 ORTHO05D001128 4.3e-06 55.8 67 40.3
vmacro22206 Vaccinium macrocarpon HOM05D001172 ORTHO05D001128 4.3e-06 55.8 67 40.3
AT2G17730 Arabidopsis thaliana HOM05D001172 ORTHO05D001128 5.6e-06 55.5 82 32.9
CANSAT56G0140 Cannabis sativa HOM05D000082 ORTHO05D000038 5.6e-06 55.5 57 49.1
CANSAT56G2782 Cannabis sativa HOM05D000082 ORTHO05D000038 5.6e-06 55.5 57 49.1
CANSAT56G3620 Cannabis sativa HOM05D000082 ORTHO05D000038 5.6e-06 55.5 57 49.1
Carub.0003s3186 Capsella rubella HOM05D001172 ORTHO05D001128 5.6e-06 55.5 82 32.9
Gohir.A11G174900 Gossypium hirsutum HOM05D000440 ORTHO05D013111 5.6e-06 55.5 92 33.7
Gohir.A13G196433 Gossypium hirsutum HOM05D000157 ORTHO05D001775 5.6e-06 55.5 91 36.3
Lalb_Chr11g0067361 Lupinus albus HOM05D000082 ORTHO05D000038 5.6e-06 55.5 64 39.1
PSO782G1328 Papaver somniferum HOM05D001689 ORTHO05D000038 5.6e-06 55.5 65 46.2
Phvul.005G028032 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 5.6e-06 55.5 53 45.3
Phvul.L001902 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 5.6e-06 55.5 53 45.3
Sabra14G0063600 Salix brachista HOM05D000341 ORTHO05D000557 5.6e-06 55.5 91 29.7
EL10Ac9g22836 Beta vulgaris HOM05D010671 ORTHO05D013417 7.3e-06 55.1 49 49.0
EL10Ac9g22837 Beta vulgaris HOM05D010671 ORTHO05D013417 7.3e-06 55.1 49 49.0
EL10Ac9g22839 Beta vulgaris HOM05D010671 ORTHO05D013417 7.3e-06 55.1 49 49.0
Carub.0006s3134 Capsella rubella HOM05D008302 ORTHO05D000038 7.3e-06 55.1 56 48.2
CARHR256630 Cardamine hirsuta HOM05D008302 ORTHO05D000038 7.3e-06 55.1 56 46.4
CiPaw.11G189500 Carya illinoinensis HOM05D001172 ORTHO05D001128 7.3e-06 55.1 55 40.0
Haze_17887 Corylus avellana HOM05D010992 ORTHO05D000038 7.3e-06 55.1 64 42.2
FAN25G2705 Fragaria x ananassa HOM05D000341 ORTHO05D000557 7.3e-06 55.1 56 44.6
Glyma.08G024800 Glycine max HOM05D000086 ORTHO05D002912 7.3e-06 55.1 105 27.6
Gorai.007G194200 Gossypium raimondii HOM05D000440 ORTHO05D013111 7.3e-06 55.1 69 37.7
PSO170G6041 Papaver somniferum HOM05D001172 ORTHO05D001128 7.3e-06 55.1 60 41.7
Phvul.L002202 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 7.3e-06 55.1 53 45.3
Sp3g31140 Schrenkiella parvula HOM05D001172 ORTHO05D001128 7.3e-06 55.1 82 34.1
EL10Ac5g12806 Beta vulgaris HOM05D000341 ORTHO05D000557 9.6e-06 54.7 60 31.7
CARHR117600 Cardamine hirsuta HOM05D008317 ORTHO05D010808 9.6e-06 54.7 62 46.8
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 9.6e-06 54.7 60 41.7
MELO3C024166.2 Cucumis melo HOM05D000341 ORTHO05D000557 9.6e-06 54.7 60 41.7
Gohir.D08G153400 Gossypium hirsutum HOM05D000341 ORTHO05D000557 9.6e-06 54.7 135 28.9
Medtr3g025510 Medicago truncatula HOM05D000082 ORTHO05D000038 9.6e-06 54.7 76 38.2
Phvul.005G027766 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 9.6e-06 54.7 53 43.4
Phvul.L001602 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 9.6e-06 54.7 53 43.4
Phvul.L001802 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 9.6e-06 54.7 53 43.4
PGSC0003DMG400024794 Solanum tuberosum HOM05D000341 ORTHO05D000557 9.6e-06 54.7 68 41.2
Zm00001eb141740 Zea mays HOM05D018779 ORTHO05D021034 9.6e-06 54.7 85 38.8


User provided reference genes

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