Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG8G7490 Aethionema arabicum HOM05D004312 ORTHO05D005394 9.0e-61 236.9 132 100.0
Thhalv10020971m.g Eutrema salsugineum HOM05D004312 ORTHO05D005394 1.4e-42 176.4 126 64.3
BcaB04g20634 Brassica carinata HOM05D004312 ORTHO05D005394 2.5e-42 175.6 126 64.3
A01p34090 Brassica napus HOM05D004312 ORTHO05D005394 2.5e-42 175.6 126 64.3
BraA01t03513Z Brassica rapa HOM05D004312 ORTHO05D005394 2.5e-42 175.6 126 64.3
BcaC09g49015 Brassica carinata HOM05D004312 ORTHO05D005394 3.2e-42 175.3 126 64.3
BolC1t04310H Brassica oleracea HOM05D004312 ORTHO05D005394 3.2e-42 175.3 126 64.3
AL3G34660 Arabidopsis lyrata HOM05D004312 ORTHO05D005394 5.5e-42 174.5 126 64.3
AT3G20740 Arabidopsis thaliana HOM05D004312 ORTHO05D005394 5.5e-42 174.5 126 63.5
Sp3g18760 Schrenkiella parvula HOM05D004312 ORTHO05D005394 1.2e-41 173.3 126 63.5
C01p43500 Brassica napus HOM05D004312 ORTHO05D005394 2.1e-41 172.6 126 63.5
BcaB06g26144 Brassica carinata HOM05D004312 ORTHO05D005394 7.9e-41 170.6 126 59.5
Haze_09609 Corylus avellana HOM05D004312 ORTHO05D005394 7.9e-41 170.6 127 61.4
THA.LOC104825403 Tarenaya hassleriana HOM05D004312 ORTHO05D005394 7.9e-41 170.6 126 61.9
Hma1.2p1_0562F.1_g179020 Hydrangea macrophylla HOM05D004312 ORTHO05D005394 1.8e-40 169.5 126 61.1
Hma1.2p1_1549F.1_g290070 Hydrangea macrophylla HOM05D004312 ORTHO05D005394 1.8e-40 169.5 126 61.1
Carub.0003s2070 Capsella rubella HOM05D004312 ORTHO05D005394 2.3e-40 169.1 126 61.1
Aa31LG8G7480 Aethionema arabicum HOM05D004312 ORTHO05D005394 3.0e-40 168.7 126 64.3
Peaxi162Scf01086g00145 Petunia axillaris HOM05D004312 ORTHO05D005394 3.9e-40 168.3 128 60.2
Gohir.A13G141400 Gossypium hirsutum HOM05D004312 ORTHO05D005394 5.1e-40 167.9 126 60.3
Gorai.013G163900 Gossypium raimondii HOM05D004312 ORTHO05D005394 5.1e-40 167.9 126 60.3
SalBow1G0135 Salvia bowleyana HOM05D004312 ORTHO05D005394 6.7e-40 167.5 127 60.6
Thecc.07G052900 Theobroma cacao HOM05D004312 ORTHO05D005394 6.7e-40 167.5 126 59.5
vmacro09746 Vaccinium macrocarpon HOM05D004312 ORTHO05D005394 6.7e-40 167.5 126 61.1
CiPaw.11G183600 Carya illinoinensis HOM05D004312 ORTHO05D005394 8.7e-40 167.2 126 60.3
COL.COLO4_09570 Corchorus olitorius HOM05D004312 ORTHO05D005394 8.7e-40 167.2 126 61.1
Migut.M01812 Erythranthe guttata HOM05D004312 ORTHO05D005394 8.7e-40 167.2 126 61.1
Duzib213G0708 Durio zibethinus HOM05D004312 ORTHO05D005394 1.1e-39 166.8 126 59.5
CSS0011160 Camellia sinensis var. sinensis HOM05D004312 ORTHO05D005394 1.5e-39 166.4 126 60.3
Gohir.D13G146100 Gossypium hirsutum HOM05D004312 ORTHO05D005394 1.5e-39 166.4 126 59.5
Manes.15G076500 Manihot esculenta HOM05D004312 ORTHO05D005394 1.5e-39 166.4 126 60.3
BraA05t21689Z Brassica rapa HOM05D004312 ORTHO05D005394 2.5e-39 165.6 126 58.7
CARHR096560 Cardamine hirsuta HOM05D004312 ORTHO05D005394 2.5e-39 165.6 126 60.3
Dinv22305 Davidia involucrata HOM05D004312 ORTHO05D005394 2.5e-39 165.6 126 61.1
Sabra16G0283500 Salix brachista HOM05D004312 ORTHO05D005394 2.5e-39 165.6 126 59.5
Cfa020416 Carpinus fangiana HOM05D004312 ORTHO05D005394 3.3e-39 165.2 126 59.5
Ciclev10008697m.g Citrus clementina HOM05D004312 ORTHO05D005394 3.3e-39 165.2 126 59.5
Cc05_g13230 Coffea canephora HOM05D004312 ORTHO05D005394 4.3e-39 164.9 126 60.3
Actinidia35316 Actinidia chinensis HOM05D004312 ORTHO05D005394 5.7e-39 164.5 126 59.5
QL08p013340 Quercus lobata HOM05D004312 ORTHO05D005394 5.7e-39 164.5 126 59.5
SalBow3G2463 Salvia bowleyana HOM05D004312 ORTHO05D005394 5.7e-39 164.5 126 59.5
PGSC0003DMG401019226 Solanum tuberosum HOM05D004312 ORTHO05D005394 5.7e-39 164.5 126 59.5
SGA_v2.0_scaffold9G04799 Striga asiatica HOM05D004312 ORTHO05D005394 5.7e-39 164.5 126 61.1
A05p28070 Brassica napus HOM05D004312 ORTHO05D005394 7.4e-39 164.1 126 57.9
Glyma.10G022000 Glycine max HOM05D004312 ORTHO05D005394 7.4e-39 164.1 126 60.3
HanXRQChr11g0332981 Helianthus annuus HOM05D004312 ORTHO05D005394 7.4e-39 164.1 126 59.5
Psat6g038960 Pisum sativum HOM05D004312 ORTHO05D005394 9.7e-39 163.7 126 60.3
Potri.001G417300 Populus trichocarpa HOM05D004312 ORTHO05D005394 9.7e-39 163.7 126 59.5
Solyc07g064090.3 Solanum lycopersicum HOM05D004312 ORTHO05D005394 9.7e-39 163.7 126 58.7
Sopen07g032230 Solanum pennellii HOM05D004312 ORTHO05D005394 9.7e-39 163.7 126 58.7
TWI39G0013 Tripterygium wilfordii HOM05D004312 ORTHO05D005394 9.7e-39 163.7 125 59.2
VMungo1215G3096 Vigna mungo HOM05D004312 ORTHO05D005394 9.7e-39 163.7 126 60.3
Atru.chr2.3209 Acer truncatum HOM05D004312 ORTHO05D005394 1.3e-38 163.3 126 59.5
FAN21G3328 Fragaria x ananassa HOM05D004312 ORTHO05D005394 1.3e-38 163.3 128 59.4
ATR0073G014 Amborella trichopoda HOM05D004312 ORTHO05D005394 1.6e-38 162.9 126 57.9
Ca_12696_v3 Cicer arietinum L. HOM05D004312 ORTHO05D005394 1.6e-38 162.9 126 60.3
FAN25G1427 Fragaria x ananassa HOM05D004312 ORTHO05D005394 1.6e-38 162.9 126 60.3
Lj8A165T113 Lonicera japonica HOM05D004312 ORTHO05D005394 1.6e-38 162.9 126 60.3
QL08p013465 Quercus lobata HOM05D004312 ORTHO05D005394 1.6e-38 162.9 126 58.7
QL08p013781 Quercus lobata HOM05D004312 ORTHO05D005394 1.6e-38 162.9 126 58.7
ECA236G2119 Erigeron canadensis HOM05D004312 ORTHO05D005394 2.2e-38 162.5 126 58.7
Glyma.02G152200 Glycine max HOM05D004312 ORTHO05D005394 2.2e-38 162.5 126 59.5
Lsat_1_v5_gn_7_108381 Lactuca sativa HOM05D004312 ORTHO05D005394 2.2e-38 162.5 126 58.7
MBI18_g30687_MAGBIO Magnolia biondii HOM05D004312 ORTHO05D005394 2.2e-38 162.5 126 59.5
Nitab4.5_0000397g0030 Nicotiana tabacum HOM05D004312 ORTHO05D005394 2.2e-38 162.5 126 58.7
Nitab4.5_0009192g0020 Nicotiana tabacum HOM05D004312 ORTHO05D005394 2.2e-38 162.5 126 58.7
A05p28030 Brassica napus HOM05D004312 ORTHO05D005394 2.8e-38 162.2 126 60.3
CANSAT25G0949 Cannabis sativa HOM05D004312 ORTHO05D005394 2.8e-38 162.2 126 57.1
GSVIVG01014605001 Vitis vinifera HOM05D004312 ORTHO05D005394 2.8e-38 162.2 126 58.7
BraA05t21685Z Brassica rapa HOM05D004312 ORTHO05D005394 3.7e-38 161.8 126 59.5
DCAR_008679 Daucus carota HOM05D004312 ORTHO05D005394 3.7e-38 161.8 126 60.3
Lj3g0015514 Lotus japonicus HOM05D004312 ORTHO05D005394 3.7e-38 161.8 126 59.5
Lalb_Chr14g0366111 Lupinus albus HOM05D004312 ORTHO05D005394 3.7e-38 161.8 126 59.5
TPR.G33318 Trifolium pratense HOM05D004312 ORTHO05D005394 3.7e-38 161.8 124 59.7
unitig_746.g26649 Utricularia gibba HOM05D004312 ORTHO05D005394 3.7e-38 161.8 126 58.7
MSTRG.6890 Avicennia marina HOM05D004312 ORTHO05D005394 4.8e-38 161.4 126 60.3
Cpa.g.sc97.70 Carica papaya HOM05D004312 ORTHO05D005394 4.8e-38 161.4 126 57.1
CDE05G1308 Ceratophyllum demersum HOM05D004312 ORTHO05D005394 4.8e-38 161.4 126 58.7
Eucgr.F03425 Eucalyptus grandis HOM05D004312 ORTHO05D005394 4.8e-38 161.4 126 57.9
Phvul.007G166700 Phaseolus vulgaris HOM05D004312 ORTHO05D005394 4.8e-38 161.4 125 60.0
TAR624G0412 Trochodendron aralioides HOM05D004312 ORTHO05D005394 4.8e-38 161.4 126 60.3
C05p43470 Brassica napus HOM05D004312 ORTHO05D005394 6.3e-38 161.0 126 56.3
BcaC05g28288 Brassica carinata HOM05D004312 ORTHO05D005394 8.2e-38 160.6 126 56.3
BolC5t33070H Brassica oleracea HOM05D004312 ORTHO05D005394 8.2e-38 160.6 126 56.3
MD11G1227100 Malus domestica HOM05D004312 ORTHO05D005394 8.2e-38 160.6 126 57.9
Nn1g06998 Nelumbo nucifera HOM05D004312 ORTHO05D005394 8.2e-38 160.6 126 58.7
PGR031G3547 Punica granatum HOM05D004312 ORTHO05D005394 8.2e-38 160.6 125 57.6
MD03G1211700 Malus domestica HOM05D004312 ORTHO05D005394 1.8e-37 159.5 126 57.1
FvH4_3g21810 Fragaria vesca HOM05D004312 ORTHO05D005394 2.4e-37 159.1 126 58.7
FAN11G3136 Fragaria x ananassa HOM05D004312 ORTHO05D005394 2.4e-37 159.1 126 58.7
RcHm_v2.0_Chr5g0037411 Rosa chinensis HOM05D004312 ORTHO05D005394 3.1e-37 158.7 126 57.9
ClCG05G014780 Citrullus lanatus HOM05D004312 ORTHO05D005394 4.1e-37 158.3 126 57.9
MELO3C018124.2 Cucumis melo HOM05D004312 ORTHO05D005394 4.1e-37 158.3 126 57.9
CsaV3_3G022910 Cucumis sativus L. HOM05D004312 ORTHO05D005394 4.1e-37 158.3 126 57.9
Hund23308 Selenicereus undatus HOM05D004312 ORTHO05D005394 4.1e-37 158.3 126 58.7
arahy.Tifrunner.gnm1.ann1.08T3T7 Arachis hypogaea HOM05D004312 ORTHO05D005394 5.3e-37 157.9 126 59.5
arahy.Tifrunner.gnm1.ann1.43SLKT Arachis hypogaea HOM05D004312 ORTHO05D005394 5.3e-37 157.9 126 59.5
arahy.Tifrunner.gnm1.ann1.IBM9RL Arachis hypogaea HOM05D004312 ORTHO05D005394 5.3e-37 157.9 126 59.5
arahy.Tifrunner.gnm1.ann1.Z28QK4 Arachis hypogaea HOM05D004312 ORTHO05D005394 5.3e-37 157.9 126 59.5
Medtr1g028310 Medicago truncatula HOM05D004312 ORTHO05D005394 5.3e-37 157.9 126 57.1
PSO541G5632 Papaver somniferum HOM05D004312 ORTHO05D005394 5.3e-37 157.9 126 57.9
Sed0007148 Sechium edule HOM05D004312 ORTHO05D005394 5.3e-37 157.9 126 57.9
HPP92_002196 Vanilla planifolia HOM05D004312 ORTHO05D005394 5.3e-37 157.9 126 57.9
EL10Ac4g07972 Beta vulgaris HOM05D004312 ORTHO05D005394 9.0e-37 157.1 126 57.1
BolC5t33065H Brassica oleracea HOM05D004312 ORTHO05D005394 9.0e-37 157.1 126 57.1
BcaC05g28285 Brassica carinata HOM05D004312 ORTHO05D005394 1.5e-36 156.4 126 56.3
HanXRQChr15g0495681 Helianthus annuus HOM05D004312 ORTHO05D005394 1.5e-36 156.4 126 57.9
Lalb_Chr14g0366131 Lupinus albus HOM05D004312 ORTHO05D005394 1.5e-36 156.4 126 57.9
PSO675G7739 Papaver somniferum HOM05D004312 ORTHO05D005394 2.0e-36 156.0 126 57.1
Sc07g0002710 Simmondsia chinensis HOM05D004312 ORTHO05D005394 4.5e-36 154.8 126 56.3
SEGI_02518 Sequoiadendron giganteum HOM05D004312 ORTHO05D005394 5.9e-36 154.5 126 56.3
AUR62015644 Chenopodium quinoa HOM05D004312 ORTHO05D005394 1.3e-35 153.3 126 56.3
AUR62020555 Chenopodium quinoa HOM05D004312 ORTHO05D005394 1.3e-35 153.3 126 56.3
PSO384G4488 Papaver somniferum HOM05D004312 ORTHO05D005394 1.7e-35 152.9 126 56.3
Phvul.005G091500 Phaseolus vulgaris HOM05D004312 ORTHO05D005394 1.7e-35 152.9 126 54.8
BcaC05g28287 Brassica carinata HOM05D004312 ORTHO05D005394 2.2e-35 152.5 127 54.3
A05p28060 Brassica napus HOM05D004312 ORTHO05D005394 2.2e-35 152.5 127 55.1
BraA05t21687Z Brassica rapa HOM05D004312 ORTHO05D005394 2.2e-35 152.5 127 55.1
DCAR_006577 Daucus carota HOM05D004312 ORTHO05D005394 2.9e-35 152.1 126 57.1
Glyma.13G287200 Glycine max HOM05D004312 ORTHO05D005394 1.1e-34 150.2 126 54.8
BolC5t33069H Brassica oleracea HOM05D004312 ORTHO05D005394 1.9e-34 149.4 127 55.9
Os08g0137100 Oryza sativa ssp. japonica HOM05D004312 ORTHO05D005394 1.9e-34 149.4 126 56.3
C05p43450 Brassica napus HOM05D004312 ORTHO05D005394 3.2e-34 148.7 127 55.9
Glyma.12G214400 Glycine max HOM05D004312 ORTHO05D005394 4.2e-34 148.3 126 54.0
PSO339G5963 Papaver somniferum HOM05D004312 ORTHO05D005394 4.2e-34 148.3 103 63.1
AagrBONN_evm.TU.Sc2ySwM_117.25 Anthoceros agrestis HOM05D004312 ORTHO05D005394 5.1e-32 141.4 126 49.2
Zm00001eb416950 Zea mays HOM05D004312 ORTHO05D005394 6.7e-32 141.0 127 54.3
Aqoxy6G01703 Aquilegia oxysepala HOM05D004312 ORTHO05D005394 1.1e-31 140.2 90 65.6
Os08g0137250 Oryza sativa ssp. japonica HOM05D004312 ORTHO05D005394 3.3e-31 138.7 126 50.8
BcaB06g26146 Brassica carinata HOM05D004312 ORTHO05D005394 4.3e-31 138.3 126 50.8
Mapoly0006s0078 Marchantia polymorpha HOM05D004312 ORTHO05D005394 5.7e-31 137.9 126 50.8
Pp3c24_1010 Physcomitrium patens HOM05D004312 ORTHO05D005394 5.7e-31 137.9 126 47.6
SMO347G0342 Selaginella moellendorffii HOM05D004312 ORTHO05D005394 2.2e-30 136.0 103 58.3
Zm00001eb173090 Zea mays HOM05D004312 ORTHO05D005394 1.1e-29 133.7 127 51.2
Prupe.4G202200 Prunus persica HOM05D004312 ORTHO05D005394 2.6e-23 112.5 96 56.2
MCO04G208 Micromonas commoda HOM05D004312 ORTHO05D005394 1.2e-20 103.6 111 44.1
MCO04G236 Micromonas commoda HOM05D004312 ORTHO05D005394 1.2e-20 103.6 111 44.1
C05p43330 Brassica napus HOM05D004312 ORTHO05D005394 7.7e-20 100.9 131 43.5
RhsimUnG0253200 Rhododendron simsii HOM05D004312 ORTHO05D005394 6.5e-19 97.8 83 55.4
Haze_27219 Corylus avellana HOM05D004312 ORTHO05D005394 1.4e-18 96.7 124 39.5
VMungo0251G2959 Vigna mungo HOM05D004312 ORTHO05D005394 3.3e-15 85.5 70 51.4
CBR_g21046 Chara braunii HOM05D004312 ORTHO05D005394 1.8e-13 79.7 57 56.1
Cre16.g693750 Chlamydomonas reinhardtii HOM05D004312 ORTHO05D005394 9.1e-13 77.4 90 38.9
HanXRQChr09g0244121 Helianthus annuus HOM05D004312 ORTHO05D005394 1.7e-11 73.2 57 57.9
PRCOL_00001232 Prasinoderma coloniale HOM05D004312 ORTHO05D005394 5.5e-10 68.2 103 30.1
BcaC05g28286 Brassica carinata HOM05D002786 ORTHO05D005394 2.6e-07 59.3 41 58.5
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 2.8e-06 55.8 82 37.8
Cfa024711 Carpinus fangiana HOM05D004312 ORTHO05D122356 4.8e-06 55.1 94 25.5


User provided reference genes

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