Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 4.5e-147 524.6 277 100.0
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 2.0e-94 349.7 277 69.0
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 5.8e-94 348.2 277 69.7
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.7e-93 346.7 277 69.3
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 6.4e-93 344.7 277 66.4
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 5.4e-92 341.7 277 68.2
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 7.1e-92 341.3 277 69.0
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 1.2e-91 340.5 277 69.0
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 1.2e-91 340.5 277 69.0
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 2.7e-91 339.3 277 68.6
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 2.7e-91 339.3 277 68.6
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 2.3e-90 336.3 277 68.2
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 3.9e-90 335.5 277 65.7
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 7.3e-89 331.3 277 64.3
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 1.6e-88 330.1 276 64.1
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 4.8e-88 328.6 277 63.5
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 3.1e-87 325.9 277 63.5
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 3.1e-87 325.9 277 63.5
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 3.1e-87 325.9 277 63.5
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 3.1e-87 325.9 277 63.5
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 3.1e-87 325.9 277 63.9
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 9.0e-87 324.3 277 61.7
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 1.2e-86 323.9 277 63.9
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 2.0e-86 323.2 277 61.7
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 2.6e-86 322.8 277 61.7
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 2.6e-86 322.8 277 61.4
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.4e-86 322.4 277 63.2
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 4.4e-86 322.0 277 61.4
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 4.4e-86 322.0 277 63.5
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 5.8e-86 321.6 275 61.8
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 9.9e-86 320.9 277 62.1
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 1.3e-85 320.5 277 62.8
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 1.3e-85 320.5 277 61.0
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.7e-85 320.1 277 62.8
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 2.9e-85 319.3 277 62.8
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 2.9e-85 319.3 277 60.3
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 3.8e-85 318.9 274 61.3
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 3.8e-85 318.9 277 60.3
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 3.8e-85 318.9 277 60.3
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 3.8e-85 318.9 277 60.6
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.9e-85 318.5 277 62.5
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 8.4e-85 317.8 277 61.7
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 2.4e-84 316.2 277 61.0
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 2.4e-84 316.2 277 59.2
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 3.2e-84 315.8 276 59.4
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 3.2e-84 315.8 277 59.6
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 3.2e-84 315.8 277 64.3
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 4.2e-84 315.5 277 62.1
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 5.4e-84 315.1 279 62.7
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 5.4e-84 315.1 276 62.0
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 5.4e-84 315.1 277 61.4
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 9.3e-84 314.3 277 62.1
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 9.3e-84 314.3 277 58.8
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 9.3e-84 314.3 277 59.9
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 1.2e-83 313.9 277 60.6
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 1.2e-83 313.9 277 62.5
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 1.6e-83 313.5 277 61.4
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 1.6e-83 313.5 276 62.0
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 2.1e-83 313.2 277 59.6
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 2.1e-83 313.2 277 61.7
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 3.5e-83 312.4 277 61.0
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 4.6e-83 312.0 270 60.7
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 6.0e-83 311.6 277 59.9
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 7.9e-83 311.2 277 61.4
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 1.0e-82 310.8 270 60.7
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 1.0e-82 310.8 277 61.7
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 1.3e-82 310.5 277 58.5
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 2.3e-82 309.7 277 58.8
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 3.9e-82 308.9 277 58.5
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 6.6e-82 308.1 276 59.8
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 1.5e-81 307.0 274 58.0
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 1.5e-81 307.0 276 59.4
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 3.3e-81 305.8 274 58.0
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 3.3e-81 305.8 274 58.0
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 5.6e-81 305.1 273 59.0
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 7.4e-81 304.7 261 60.9
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 7.4e-81 304.7 274 57.7
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 1.3e-80 303.9 277 57.4
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 2.1e-80 303.1 277 59.9
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 3.6e-80 302.4 277 58.8
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 4.8e-80 302.0 266 60.2
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 8.1e-80 301.2 318 54.1
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 8.1e-80 301.2 268 61.2
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 8.1e-80 301.2 266 60.5
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 9.0e-79 297.7 277 56.7
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 1.5e-78 297.0 279 57.3
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 3.4e-78 295.8 282 55.7
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 3.4e-78 295.8 270 59.6
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 7.6e-78 294.7 261 59.0
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 9.9e-78 294.3 261 59.0
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 2.2e-77 293.1 280 56.1
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 1.4e-76 290.4 277 56.0
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 1.4e-76 290.4 265 56.6
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.9e-76 290.0 265 58.5
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 2.4e-76 289.7 277 56.3
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 1.2e-75 287.3 266 56.8
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 2.1e-75 286.6 274 56.6
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 2.7e-75 286.2 266 56.4
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 1.1e-73 280.8 255 58.4
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 1.5e-73 280.4 277 56.0
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 3.3e-73 279.3 270 53.3
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 1.6e-72 276.9 260 55.4
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 8.1e-72 274.6 274 53.3
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 2.4e-71 273.1 274 52.9
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 1.5e-70 270.4 274 52.6
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 3.8e-69 265.8 274 52.9
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 8.7e-66 254.6 174 70.1
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 1.1e-65 254.2 231 57.1
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 3.7e-64 249.2 244 53.3
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.4e-63 247.3 232 56.0
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 7.6e-62 241.5 260 51.2
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 1.4e-60 237.3 223 55.2
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 2.3e-58 229.9 261 46.0
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 3.0e-58 229.6 278 43.2
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 8.7e-58 228.0 261 46.4
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 2.5e-57 226.5 158 72.8
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 5.5e-52 208.8 160 60.6
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 5.5e-52 208.8 145 70.3
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 4.6e-51 205.7 145 69.0
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 3.3e-49 199.5 269 40.9
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 5.9e-46 188.7 176 55.7
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 4.2e-44 182.6 271 41.7
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 4.7e-43 179.1 135 65.9
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 6.1e-43 178.7 119 69.7
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 5.9e-38 162.2 170 51.2
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 3.6e-35 152.9 221 39.8
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 4.7e-35 152.5 274 36.1
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 1.8e-34 150.6 169 47.9
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 2.9e-29 133.3 91 72.5
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 4.7e-27 125.9 84 73.8
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 2.3e-26 123.6 168 39.9
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 1.6e-22 110.9 96 64.6
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 4.4e-17 92.8 56 78.6
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 9.8e-17 91.7 53 77.4
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 1.8e-15 87.4 48 87.5
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 3.1e-15 86.7 46 87.0
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 2.0e-14 84.0 66 69.7
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 1.3e-08 64.7 34 94.1
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 3.7e-08 63.2 34 94.1


User provided reference genes

Program Settings