Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 8.3e-290 1000.0 624 100.0
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.3e-113 412.9 699 44.3
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 4.3e-113 412.9 647 46.2
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.9e-106 389.8 650 45.8
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.5e-105 387.9 647 44.7
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 2.5e-105 387.1 646 45.2
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 9.6e-105 385.2 646 45.0
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.4e-103 381.3 643 44.6
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 2.4e-103 380.6 645 44.5
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 7.2e-100 369.0 648 44.6
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 4.6e-99 366.3 644 44.1
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 3.2e-92 343.6 602 42.9
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 9.4e-92 342.0 591 44.5
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.6e-91 341.3 648 44.0
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.6e-91 340.1 563 44.8
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.0e-90 338.6 590 45.1
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 5.1e-90 336.3 645 43.9
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 5.3e-87 326.2 596 42.3
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.3e-85 321.6 574 43.6
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 2.7e-83 313.9 566 44.5
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 3.6e-83 313.5 580 43.1
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 3.6e-83 313.5 580 43.1
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-82 311.6 570 43.5
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.9e-77 293.9 536 44.8
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 8.0e-75 285.8 571 45.0
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.0e-74 285.4 574 44.9
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 2.3e-74 284.3 582 45.0
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 8.8e-74 282.3 567 45.0
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.4e-71 275.0 558 42.1
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.6e-67 261.5 576 38.7
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 5.2e-66 256.5 558 40.3
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 2.9e-53 214.2 630 34.9
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 5.7e-49 199.9 675 33.9
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.3e-45 188.0 649 34.4
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 2.3e-45 188.0 621 33.2
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.7e-43 180.3 715 32.3
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.3e-40 172.2 546 34.6
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.0e-38 164.9 552 33.9
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 5.0e-37 160.2 273 41.4
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 9.5e-36 156.0 544 33.3
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.8e-35 154.5 580 31.7
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 2.3e-34 151.4 548 33.4
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 3.1e-34 151.0 564 35.6
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 3.1e-34 151.0 564 35.6
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 9.8e-33 146.0 563 34.8
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 8.3e-32 142.9 558 29.9
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 6.0e-30 136.7 540 32.8
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 7.8e-30 136.3 575 30.1
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.7e-29 135.2 575 28.9
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 6.6e-29 133.3 583 29.0
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 4.7e-27 127.1 570 30.0
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 6.2e-27 126.7 575 28.7
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.8e-26 125.2 513 27.5
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 4.4e-25 120.6 488 27.9
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 3.7e-24 117.5 467 30.2
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 4.9e-24 117.1 560 32.9
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.4e-23 115.5 290 37.2
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.2e-23 114.4 248 42.3
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.0e-21 109.4 348 30.7
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 2.3e-21 108.2 607 26.7
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 2.3e-21 108.2 595 28.9
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 5.1e-21 107.1 572 28.1
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.9e-20 105.1 391 29.7
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.3e-20 104.4 383 30.0
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 9.6e-20 102.8 318 33.6
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.6e-19 102.1 682 26.0
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.6e-19 102.1 587 26.4
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 1.6e-19 102.1 160 45.6
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.1e-19 101.7 586 26.3
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 2.1e-19 101.7 329 31.3
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 2.8e-19 101.3 496 27.4
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 3.6e-19 100.9 343 30.0
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 6.2e-19 100.1 369 29.0
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 8.1e-19 99.8 586 28.2
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.1e-18 99.4 113 55.8
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 2.4e-18 98.2 618 29.8
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 4.0e-18 97.4 563 25.6
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 6.8e-18 96.7 624 26.1
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 6.8e-18 96.7 397 28.2
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 6.8e-18 96.7 197 41.6
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 8.9e-18 96.3 341 29.0
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.9e-18 96.3 682 25.7
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 2.6e-17 94.7 359 29.8
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.4e-17 94.0 390 27.9
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 4.4e-17 94.0 334 29.9
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 5.8e-17 93.6 591 27.6
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 9.9e-17 92.8 550 28.2
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 1.1e-15 89.4 104 57.7
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-15 89.0 113 54.0
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 1.4e-15 89.0 113 54.0
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.4e-15 89.0 324 31.5
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.4e-15 88.2 655 27.3
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 3.2e-15 87.8 113 53.1
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 3.2e-15 87.8 104 56.7
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 3.2e-15 87.8 210 36.7
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 4.2e-15 87.4 192 39.1
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 7.1e-15 86.7 613 27.2
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 1.6e-14 85.5 550 26.9
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 2.7e-14 84.7 215 36.7
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 3.5e-14 84.3 198 33.8
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 3.5e-14 84.3 382 27.2
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.0e-13 82.8 641 26.7
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.0e-13 82.8 399 28.1
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.3e-13 82.4 191 35.1
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 1.3e-13 82.4 513 26.1
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.7e-13 82.0 436 26.1
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.7e-13 82.0 559 25.4
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 5.1e-13 80.5 549 25.9
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 8.7e-13 79.7 614 23.9
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.5e-12 79.0 154 39.6
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 3.3e-12 77.8 537 25.5
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 5.6e-12 77.0 197 33.0
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 7.3e-12 76.6 96 53.1
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 9.6e-12 76.3 172 36.6
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 9.6e-12 76.3 499 24.0
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 3.6e-11 74.3 351 27.6
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 1.4e-10 72.4 144 35.4
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.8e-10 72.0 339 25.1
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.8e-10 72.0 155 34.2
BolC2t10446H Brassica oleracea HOM05D026065 ORTHO05D019960 2.4e-10 71.6 237 35.0
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 2.4e-10 71.6 165 35.8
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.1e-10 71.2 154 35.7
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 4.0e-10 70.9 214 32.7
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 4.0e-10 70.9 159 37.7
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 5.3e-10 70.5 623 26.2
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 6.9e-10 70.1 547 26.9
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 9.0e-10 69.7 401 25.7
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 5.8e-09 67.0 375 26.4
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 5.8e-09 67.0 145 34.5
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 5.8e-09 67.0 272 29.8
BolC3t14506H Brassica oleracea HOM05D026065 ORTHO05D019960 9.9e-09 66.2 236 33.5
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.3e-08 65.9 343 26.8
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.3e-08 65.9 355 25.4
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.3e-08 65.9 241 31.5
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.8e-08 64.3 168 32.7
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 3.8e-08 64.3 703 21.9
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.4e-08 63.2 670 25.7
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 8.4e-08 63.2 394 24.6
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 8.4e-08 63.2 160 36.9
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 1.4e-07 62.4 134 32.8
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.9e-07 62.0 375 25.9
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.9e-07 62.0 200 29.5
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 4.2e-07 60.8 184 32.6
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 5.4e-07 60.5 157 36.3
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.2e-06 59.3 197 29.9
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 2.7e-06 58.2 192 30.2
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 3.5e-06 57.8 577 23.9
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 4.6e-06 57.4 161 34.2
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 4.6e-06 57.4 148 31.1
BcaB06g26292 Brassica carinata HOM05D023865 ORTHO05D019960 6.0e-06 57.0 116 33.6
BcaNung06066 Brassica carinata HOM05D023865 ORTHO05D019960 6.0e-06 57.0 116 33.6


User provided reference genes

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