Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 2.2e-168 595.5 297 100.0
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 7.2e-151 537.3 297 89.6
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 4.7e-150 534.6 297 88.2
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 6.1e-150 534.3 297 89.6
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 9.8e-148 526.9 297 88.2
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 5.9e-145 517.7 292 88.7
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 1.3e-144 516.5 292 88.4
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 1.7e-144 516.2 292 88.4
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 1.7e-144 516.2 292 88.4
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 1.7e-144 516.2 292 88.4
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 4.2e-143 511.5 292 87.7
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 1.7e-139 499.6 298 82.9
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 3.7e-131 471.9 291 81.1
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 7.0e-130 467.6 298 76.5
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 1.0e-128 463.8 296 75.7
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.7e-128 463.0 298 76.5
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 6.6e-128 461.1 298 76.8
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 1.9e-127 459.5 298 76.2
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 1.9e-127 459.5 290 76.6
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 3.3e-127 458.8 298 75.5
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 4.3e-127 458.4 293 76.8
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 9.5e-127 457.2 297 74.7
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 1.2e-126 456.8 290 75.5
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 1.2e-126 456.8 292 76.4
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 2.1e-126 456.1 291 76.6
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 6.2e-126 454.5 297 73.1
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 1.1e-125 453.8 299 75.6
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 1.4e-125 453.4 291 76.6
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 2.3e-125 452.6 292 75.0
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 2.3e-125 452.6 297 75.4
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 3.1e-125 452.2 291 76.3
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 6.8e-125 451.1 295 75.9
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 8.9e-125 450.7 291 76.3
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 1.5e-124 449.9 298 73.5
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 2.0e-124 449.5 298 72.8
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 2.0e-124 449.5 301 75.1
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 4.4e-124 448.4 299 73.2
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 4.4e-124 448.4 298 75.5
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 4.4e-124 448.4 293 73.7
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 4.4e-124 448.4 298 74.5
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 5.8e-124 448.0 298 72.5
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 5.8e-124 448.0 298 73.2
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 7.5e-124 447.6 298 73.8
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 7.5e-124 447.6 298 74.2
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 2.9e-123 445.7 297 72.1
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 2.9e-123 445.7 295 72.9
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 3.7e-123 445.3 298 74.5
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 6.4e-123 444.5 298 74.5
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 8.3e-123 444.1 291 74.6
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 1.4e-122 443.4 298 72.5
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 1.9e-122 443.0 298 72.8
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 2.4e-122 442.6 302 73.8
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 2.4e-122 442.6 298 74.5
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 2.4e-122 442.6 298 72.1
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 2.4e-122 442.6 297 72.7
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 3.2e-122 442.2 298 72.1
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 3.2e-122 442.2 290 75.2
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 5.4e-122 441.4 296 73.3
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 7.0e-122 441.0 292 74.3
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 7.0e-122 441.0 298 72.1
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 9.2e-122 440.7 291 73.5
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 1.6e-121 439.9 290 72.1
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 6.0e-121 438.0 299 71.2
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 6.0e-121 438.0 292 73.3
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 7.8e-121 437.6 297 72.7
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 1.0e-120 437.2 291 73.5
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 1.0e-120 437.2 295 72.9
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 6.6e-120 434.5 291 72.5
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 1.5e-119 433.3 297 72.7
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 4.3e-119 431.8 297 71.7
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 5.6e-119 431.4 291 72.9
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 2.1e-118 429.5 331 65.3
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 2.8e-118 429.1 329 66.3
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 3.6e-118 428.7 297 71.4
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 1.4e-117 426.8 290 71.4
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 2.0e-116 422.9 290 71.0
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 2.0e-116 422.9 295 69.8
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 2.6e-116 422.5 297 70.4
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 4.4e-116 421.8 298 69.8
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 7.5e-116 421.0 281 74.4
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 1.1e-114 417.2 273 74.0
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 7.1e-114 414.5 333 64.0
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 6.6e-112 407.9 270 73.7
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 2.1e-110 402.9 304 66.4
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 4.7e-110 401.7 298 69.8
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 3.1e-109 399.1 249 75.5
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 4.0e-109 398.7 239 78.2
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 1.5e-108 396.7 231 79.2
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 3.4e-108 395.6 270 74.1
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 9.9e-108 394.0 299 66.2
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 2.9e-107 392.5 285 66.0
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 1.9e-106 389.8 268 73.5
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 7.1e-106 387.9 238 76.5
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 1.1e-101 374.0 267 68.2
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 1.2e-100 370.5 221 81.4
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 9.9e-100 367.5 207 88.9
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 3.5e-97 359.0 247 72.1
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 3.6e-94 349.0 237 70.5
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 5.3e-93 345.1 296 58.4
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 3.5e-89 332.4 293 56.3
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 3.9e-88 328.9 285 57.5
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 4.8e-78 295.4 411 45.5
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 7.6e-76 288.1 281 58.0
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 7.2e-66 255.0 271 52.0
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 3.0e-56 223.0 153 74.5
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 2.2e-54 216.9 262 51.5
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 1.8e-53 213.8 291 39.9
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 9.1e-53 211.5 246 45.1
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 2.7e-49 199.9 118 79.7
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 8.8e-48 194.9 117 71.8
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 2.0e-47 193.7 191 52.9
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 4.5e-44 182.6 219 49.3
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 5.3e-37 159.1 175 52.0
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 7.7e-36 155.2 235 39.6
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 6.3e-30 135.6 111 59.5
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 1.5e-26 124.4 70 80.0
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 3.3e-26 123.2 82 75.6
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 7.8e-20 102.1 52 88.5
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 1.6e-17 94.4 59 76.3
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 8.9e-16 88.6 52 73.1
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 2.0e-15 87.4 47 78.7
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 5.8e-15 85.9 55 78.2
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 7.5e-15 85.5 190 33.2
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 1.6e-12 77.8 108 39.8
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 1.6e-12 77.8 59 61.0
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 1.9e-10 70.9 45 73.3
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 4.7e-09 66.2 55 61.8
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 4.7e-09 66.2 55 61.8
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 3.1e-08 63.5 176 30.7
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 5.2e-08 62.8 42 76.2
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 5.2e-08 62.8 164 30.5
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 8.9e-08 62.0 181 30.4
MCO01G455 Micromonas commoda HOM05D016613 ORTHO05D014817 3.4e-07 60.1 185 28.6
ClCG05G021840 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.3e-06 58.2 89 43.8
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 2.2e-06 57.4 84 44.0
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 2.9e-06 57.0 29 75.9
PRCOL_00000730 Prasinoderma coloniale HOM05D016613 ORTHO05D014817 4.9e-06 56.2 174 29.3
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 6.4e-06 55.8 169 29.6


User provided reference genes

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