Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.4e-145 519.6 268 100.0
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 1.0e-132 476.9 269 93.3
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.8e-132 476.1 269 92.6
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 1.8e-132 476.1 269 92.9
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 2.3e-132 475.7 269 92.9
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 2.3e-132 475.7 269 92.9
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 2.3e-132 475.7 269 92.9
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 3.0e-132 475.3 269 92.6
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 3.0e-132 475.3 269 92.6
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 3.0e-132 475.3 269 92.9
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 6.8e-132 474.2 269 92.6
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 8.9e-132 473.8 269 92.6
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 2.6e-131 472.2 269 92.6
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 2.6e-131 472.2 269 92.2
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 2.6e-131 472.2 269 92.2
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.3e-130 469.9 269 91.8
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 1.3e-130 469.9 269 91.8
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 3.7e-130 468.4 265 92.8
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 1.8e-129 466.1 271 91.1
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 5.4e-121 438.0 271 85.6
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 6.2e-109 397.9 271 80.1
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.4e-108 396.7 271 80.1
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 6.8e-108 394.4 273 78.0
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.7e-106 389.8 282 75.5
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 2.9e-106 389.0 282 75.2
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 2.9e-106 389.0 268 76.9
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 2.9e-106 389.0 273 78.0
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 3.7e-106 388.7 274 78.1
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 4.9e-106 388.3 257 81.3
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.9e-106 388.3 282 75.5
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 4.9e-106 388.3 282 75.5
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 6.4e-106 387.9 275 77.8
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 6.4e-106 387.9 273 77.7
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.1e-105 387.1 271 77.1
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 1.1e-105 387.1 280 75.7
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.9e-105 386.3 274 77.7
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 2.4e-105 386.0 274 76.3
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 5.4e-105 384.8 270 78.5
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 9.2e-105 384.0 277 75.8
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 1.2e-104 383.6 275 76.4
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 2.7e-104 382.5 273 76.6
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 3.5e-104 382.1 271 76.4
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 3.5e-104 382.1 272 77.2
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 7.8e-104 380.9 272 76.8
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 1.0e-103 380.6 268 76.1
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 1.0e-103 380.6 270 77.8
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 1.3e-103 380.2 272 76.8
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.3e-103 380.2 274 75.9
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 1.7e-103 379.8 279 74.6
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.7e-103 379.8 274 75.5
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 1.7e-103 379.8 279 74.6
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 2.3e-103 379.4 272 76.1
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 2.3e-103 379.4 272 76.1
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 3.0e-103 379.0 277 76.2
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 3.0e-103 379.0 277 76.2
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 3.0e-103 379.0 278 74.8
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 3.0e-103 379.0 274 75.5
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 3.0e-103 379.0 267 77.5
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 3.9e-103 378.6 270 77.4
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 3.9e-103 378.6 268 76.9
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 5.1e-103 378.3 267 76.8
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 5.1e-103 378.3 278 75.5
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 8.6e-103 377.5 275 76.4
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 1.1e-102 377.1 275 76.0
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 1.9e-102 376.3 270 76.3
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 2.5e-102 375.9 283 74.2
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 3.3e-102 375.6 268 75.7
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 3.3e-102 375.6 273 74.4
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 3.3e-102 375.6 278 74.1
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 4.3e-102 375.2 272 75.7
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 5.6e-102 374.8 276 73.9
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 7.3e-102 374.4 272 76.1
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 9.5e-102 374.0 271 74.9
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.8e-101 372.5 268 76.9
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.7e-101 371.7 274 75.2
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 6.2e-101 371.3 277 71.8
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 1.4e-100 370.2 269 72.1
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 3.1e-100 369.0 273 75.1
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 4.0e-100 368.6 282 74.5
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 8.9e-100 367.5 282 74.1
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 1.2e-99 367.1 269 73.6
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.2e-99 367.1 270 73.0
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 1.5e-99 366.7 280 73.6
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 2.0e-99 366.3 282 74.1
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 2.6e-99 365.9 273 72.9
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 5.8e-99 364.8 282 73.8
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 7.6e-99 364.4 276 73.6
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 9.9e-99 364.0 269 75.1
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 6.4e-98 361.3 266 74.1
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 8.4e-98 360.9 227 83.7
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 1.1e-97 360.5 272 73.2
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 1.4e-97 360.1 271 72.0
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 1.4e-97 360.1 281 73.0
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 1.4e-97 360.1 235 83.0
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 3.2e-97 359.0 274 71.2
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 4.2e-97 358.6 198 91.4
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 5.4e-97 358.2 269 74.7
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 9.2e-97 357.5 274 73.4
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.2e-96 357.1 273 73.6
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 2.1e-96 356.3 274 71.9
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 2.7e-96 355.9 285 70.2
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 2.7e-96 355.9 218 85.3
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 3.5e-96 355.5 277 70.8
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 4.6e-96 355.1 274 71.9
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.0e-95 354.0 234 80.8
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.3e-95 352.8 276 70.7
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 6.6e-95 351.3 272 72.1
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 2.5e-94 349.4 280 71.8
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 3.3e-94 349.0 282 72.0
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 4.3e-94 348.6 278 70.9
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 5.6e-94 348.2 269 72.5
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 1.2e-93 347.1 277 72.2
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 1.2e-93 347.1 270 73.0
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 2.8e-93 345.9 273 70.3
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 9.0e-92 340.9 273 70.7
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 5.8e-91 338.2 275 69.5
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 1.6e-88 330.1 193 85.5
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 2.3e-87 326.2 281 64.8
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 1.5e-83 313.5 218 75.2
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 4.9e-82 308.5 196 79.1
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 9.3e-81 304.3 210 75.7
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 3.7e-77 292.4 169 87.0
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 5.8e-75 285.0 241 68.5
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 4.2e-65 252.3 159 82.4
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 2.1e-64 250.0 134 94.0
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 1.3e-63 247.3 192 72.4
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 1.6e-61 240.4 194 73.2
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 5.3e-60 235.3 161 71.4
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 1.8e-55 220.3 198 66.7
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 8.2e-53 211.5 164 64.0
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 5.1e-47 192.2 275 49.8
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 5.0e-42 175.6 124 72.6
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 8.0e-40 168.3 96 85.4
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.4e-39 167.5 232 49.1
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.3e-37 161.0 148 66.2
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 9.1e-36 154.8 184 48.9
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 9.1e-36 154.8 184 48.9
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 9.8e-22 108.2 80 76.2
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 6.3e-21 105.5 108 60.2
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 2.3e-10 70.5 175 30.3
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 5.0e-10 69.3 215 30.7
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.3e-09 66.6 38 84.2
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.6e-08 63.2 78 51.3
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 8.9e-07 58.5 60 48.3
Pp3c11_21590 Physcomitrium patens HOM05D041339 ORTHO05D031170 2.6e-06 57.0 99 42.4
Pp3c7_6810 Physcomitrium patens HOM05D041339 ORTHO05D031170 3.4e-06 56.6 99 42.4


User provided reference genes

Program Settings