Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG6G8670 Aethionema arabicum HOM05D002095 ORTHO05D002058 1.2e-35 152.5 74 100.0
Aa31LG6G4480 Aethionema arabicum HOM05D002095 ORTHO05D002058 1.8e-18 95.5 68 60.3
Carub.0006s3184 Capsella rubella HOM05D002095 ORTHO05D002058 2.1e-14 82.0 72 52.8
AL6G47510 Arabidopsis lyrata HOM05D002095 ORTHO05D002058 4.6e-14 80.9 72 51.4
CARHR253600 Cardamine hirsuta HOM05D002095 ORTHO05D002058 4.6e-14 80.9 72 51.4
Thhalv10028412m.g Eutrema salsugineum HOM05D002095 ORTHO05D002058 2.3e-13 78.6 72 50.0
BcaB01g01753 Brassica carinata HOM05D002095 ORTHO05D002058 1.5e-12 75.9 72 47.2
BcaC04g21243 Brassica carinata HOM05D002095 ORTHO05D002058 2.5e-12 75.1 72 45.8
C09p33930 Brassica napus HOM05D002095 ORTHO05D002058 2.5e-12 75.1 72 45.8
BolC9t56229H Brassica oleracea HOM05D002095 ORTHO05D002058 2.5e-12 75.1 72 45.8
THA.LOC104806332 Tarenaya hassleriana HOM05D002095 ORTHO05D002058 3.3e-12 74.7 68 48.5
A09p26780 Brassica napus HOM05D002095 ORTHO05D002058 4.3e-12 74.3 72 45.8
BraA09t38250Z Brassica rapa HOM05D002095 ORTHO05D002058 4.3e-12 74.3 72 45.8
THA.LOC104813609 Tarenaya hassleriana HOM05D002095 ORTHO05D002058 4.3e-12 74.3 72 47.2
Duzib235G1530 Durio zibethinus HOM05D002095 ORTHO05D002058 7.4e-12 73.6 71 47.9
A03p29780 Brassica napus HOM05D002095 ORTHO05D002058 1.6e-11 72.4 71 47.9
BcaC03g16265 Brassica carinata HOM05D002095 ORTHO05D002058 2.1e-11 72.0 72 45.8
BolC2t10081H Brassica oleracea HOM05D002095 ORTHO05D002058 2.1e-11 72.0 72 45.8
Sed0012971 Sechium edule HOM05D002095 ORTHO05D002058 2.1e-11 72.0 68 50.0
Gohir.D06G160100 Gossypium hirsutum HOM05D002095 ORTHO05D002058 2.8e-11 71.6 71 49.3
Gorai.010G186800 Gossypium raimondii HOM05D002095 ORTHO05D002058 2.8e-11 71.6 71 49.3
Sabra06G0009300 Salix brachista HOM05D002095 ORTHO05D002058 2.8e-11 71.6 72 44.4
BraA03t12170Z Brassica rapa HOM05D002095 ORTHO05D002058 3.7e-11 71.2 71 47.9
Dinv07410 Davidia involucrata HOM05D002095 ORTHO05D002058 3.7e-11 71.2 71 49.3
BcaB05g23736 Brassica carinata HOM05D002095 ORTHO05D002058 4.8e-11 70.9 72 47.2
Manes.09G077200 Manihot esculenta HOM05D002095 ORTHO05D002058 4.8e-11 70.9 72 47.2
Thecc.06G234100 Theobroma cacao HOM05D002095 ORTHO05D002058 4.8e-11 70.9 72 47.2
Manes.08G068300 Manihot esculenta HOM05D002095 ORTHO05D002058 6.2e-11 70.5 72 47.2
Sp6g04940 Schrenkiella parvula HOM05D002095 ORTHO05D002058 6.2e-11 70.5 72 44.4
Aqoxy1G04052 Aquilegia oxysepala HOM05D002095 ORTHO05D002058 8.1e-11 70.1 72 43.1
Duzib160G0921 Durio zibethinus HOM05D002095 ORTHO05D002058 8.1e-11 70.1 71 47.9
Gohir.A06G153300 Gossypium hirsutum HOM05D002095 ORTHO05D002058 8.1e-11 70.1 71 47.9
GSVIVG01003328001 Vitis vinifera HOM05D002095 ORTHO05D002058 8.1e-11 70.1 72 45.8
C02p40610 Brassica napus HOM05D002095 ORTHO05D002058 1.1e-10 69.7 72 43.1
C03p36040 Brassica napus HOM05D002095 ORTHO05D002058 1.1e-10 69.7 71 45.1
Duzib192G0198 Durio zibethinus HOM05D002095 ORTHO05D002058 1.4e-10 69.3 71 46.5
MBI16_g31703_MAGBIO Magnolia biondii HOM05D002095 ORTHO05D002058 1.4e-10 69.3 72 44.4
Potri.016G012900 Populus trichocarpa HOM05D002095 ORTHO05D002058 1.4e-10 69.3 72 44.4
Sabra16G0015600 Salix brachista HOM05D002095 ORTHO05D002058 1.4e-10 69.3 72 44.4
BcaB01g02625 Brassica carinata HOM05D002095 ORTHO05D002058 1.8e-10 68.9 72 45.8
MELO3C007439.2 Cucumis melo HOM05D002095 ORTHO05D002058 1.8e-10 68.9 68 48.5
CsaV3_6G048470 Cucumis sativus L. HOM05D002095 ORTHO05D002058 1.8e-10 68.9 68 48.5
Lj1A1240G33 Lonicera japonica HOM05D002095 ORTHO05D002058 1.8e-10 68.9 72 45.8
Sabra16G0002500 Salix brachista HOM05D002095 ORTHO05D002058 1.8e-10 68.9 72 44.4
Ciclev10014213m.g Citrus clementina HOM05D002095 ORTHO05D002058 2.4e-10 68.6 71 43.7
ClCG01G021450 Citrullus lanatus HOM05D002095 ORTHO05D002058 3.1e-10 68.2 68 47.1
Gohir.A05G174800 Gossypium hirsutum HOM05D002095 ORTHO05D002058 3.1e-10 68.2 71 46.5
Gohir.D05G177800 Gossypium hirsutum HOM05D002095 ORTHO05D002058 3.1e-10 68.2 71 46.5
Gorai.009G183200 Gossypium raimondii HOM05D002095 ORTHO05D002058 3.1e-10 68.2 71 46.5
Atru.chr1.2434 Acer truncatum HOM05D002095 ORTHO05D002058 4.0e-10 67.8 72 43.1
Aa31LG9G10080 Aethionema arabicum HOM05D002095 ORTHO05D002058 4.0e-10 67.8 72 41.7
BcaC01g04582 Brassica carinata HOM05D002095 ORTHO05D002058 4.0e-10 67.8 71 43.7
BolC3t15914H Brassica oleracea HOM05D002095 ORTHO05D002058 4.0e-10 67.8 71 43.7
CSS0014644 Camellia sinensis var. sinensis HOM05D002095 ORTHO05D002058 4.0e-10 67.8 68 45.6
CSS0017522 Camellia sinensis var. sinensis HOM05D002095 ORTHO05D002058 4.0e-10 67.8 68 45.6
Cfa000093 Carpinus fangiana HOM05D002095 ORTHO05D002058 4.0e-10 67.8 72 47.2
COL.COLO4_31893 Corchorus olitorius HOM05D002095 ORTHO05D002058 4.0e-10 67.8 71 43.7
Potri.006G011701 Populus trichocarpa HOM05D002095 ORTHO05D002058 4.0e-10 67.8 72 40.3
FAN21G3943 Fragaria x ananassa HOM05D002095 ORTHO05D002058 5.3e-10 67.4 71 45.1
AT4G12570 Arabidopsis thaliana HOM05D002095 ORTHO05D002058 6.9e-10 67.0 72 43.1
CDE04G0476 Ceratophyllum demersum HOM05D002095 ORTHO05D002058 6.9e-10 67.0 68 42.6
Glyma.17G008400 Glycine max HOM05D002095 ORTHO05D002058 6.9e-10 67.0 72 41.7
Nn1g07412 Nelumbo nucifera HOM05D002095 ORTHO05D002058 6.9e-10 67.0 72 41.7
Potri.016G059800 Populus trichocarpa HOM05D002095 ORTHO05D002058 6.9e-10 67.0 65 43.1
TAR626G0534 Trochodendron aralioides HOM05D002095 ORTHO05D002058 6.9e-10 67.0 72 41.7
DCAR_004908 Daucus carota HOM05D002095 ORTHO05D002058 9.0e-10 66.6 71 45.1
RcHm_v2.0_Chr5g0001431 Rosa chinensis HOM05D002095 ORTHO05D002058 9.0e-10 66.6 70 42.9
CSS0046522 Camellia sinensis var. sinensis HOM05D002095 ORTHO05D002058 1.2e-09 66.2 68 44.1
PSO541G2599 Papaver somniferum HOM05D002095 ORTHO05D002058 1.2e-09 66.2 69 43.5
PSO675G0057 Papaver somniferum HOM05D002095 ORTHO05D002058 1.2e-09 66.2 69 43.5
Aqoxy7G03068 Aquilegia oxysepala HOM05D002095 ORTHO05D002058 1.5e-09 65.9 72 40.3
Eucgr.D01414 Eucalyptus grandis HOM05D002095 ORTHO05D002058 1.5e-09 65.9 71 45.1
Eucgr.D01415 Eucalyptus grandis HOM05D002095 ORTHO05D002058 1.5e-09 65.9 71 45.1
FAN25G0912 Fragaria x ananassa HOM05D002095 ORTHO05D002058 1.5e-09 65.9 70 44.3
EL10Ac8g20196 Beta vulgaris HOM05D002095 ORTHO05D002058 2.0e-09 65.5 71 43.7
ECA234G2065 Erigeron canadensis HOM05D002095 ORTHO05D002058 2.0e-09 65.5 72 38.9
Prupe.4G009700 Prunus persica HOM05D002095 ORTHO05D002058 2.0e-09 65.5 68 44.1
MSTRG.7165 Avicennia marina HOM05D002095 ORTHO05D002058 2.6e-09 65.1 70 41.4
FvH4_3g00910 Fragaria vesca HOM05D002095 ORTHO05D002058 2.6e-09 65.1 70 44.3
Lj4g0028234 Lotus japonicus HOM05D002095 ORTHO05D002058 3.4e-09 64.7 71 43.7
CANSAT56G0973 Cannabis sativa HOM05D002095 ORTHO05D002058 4.5e-09 64.3 71 43.7
PGR004G2232 Punica granatum HOM05D002095 ORTHO05D002058 4.5e-09 64.3 72 40.3
Eucgr.D01416 Eucalyptus grandis HOM05D002095 ORTHO05D002058 5.8e-09 63.9 67 44.8
Rhsim13G0145500 Rhododendron simsii HOM05D002095 ORTHO05D002058 5.8e-09 63.9 65 44.6
RhsimUnG0110400 Rhododendron simsii HOM05D002095 ORTHO05D002058 5.8e-09 63.9 65 44.6
QL05p069565 Quercus lobata HOM05D002095 ORTHO05D002058 7.6e-09 63.5 72 43.1
Sed0004105 Sechium edule HOM05D002095 ORTHO05D002058 7.6e-09 63.5 68 42.6
SEGI_25511 Sequoiadendron giganteum HOM05D002095 ORTHO05D002058 7.6e-09 63.5 70 41.4
CiPaw.09G103000 Carya illinoinensis HOM05D002095 ORTHO05D002058 1.0e-08 63.2 72 40.3
CiPaw.12G015000 Carya illinoinensis HOM05D002095 ORTHO05D002058 1.0e-08 63.2 72 40.3
Eucgr.L02994 Eucalyptus grandis HOM05D002095 ORTHO05D002058 1.0e-08 63.2 67 44.8
Glyma.07G265600 Glycine max HOM05D002095 ORTHO05D002058 1.0e-08 63.2 72 40.3
Glyma.07G265700 Glycine max HOM05D002095 ORTHO05D002058 1.0e-08 63.2 72 40.3
QL05p069531 Quercus lobata HOM05D002095 ORTHO05D002058 1.0e-08 63.2 72 43.1
TWI38G0135 Tripterygium wilfordii HOM05D002095 ORTHO05D002058 1.0e-08 63.2 72 41.7
HanXRQChr05g0129121 Helianthus annuus HOM05D002095 ORTHO05D002058 1.3e-08 62.8 70 40.0
Oeu009397.1 Olea europaea HOM05D002095 ORTHO05D002058 1.7e-08 62.4 66 42.4
Phvul.003G084200 Phaseolus vulgaris HOM05D002095 ORTHO05D002058 2.2e-08 62.0 72 40.3
QL05p069442 Quercus lobata HOM05D002095 ORTHO05D002058 2.2e-08 62.0 72 41.7
Cpa.g.sc3792.1 Carica papaya HOM05D002095 ORTHO05D002058 2.9e-08 61.6 72 40.3
TWI63G1257 Tripterygium wilfordii HOM05D002095 ORTHO05D002058 2.9e-08 61.6 72 40.3
AUR62021854 Chenopodium quinoa HOM05D002095 ORTHO05D002058 3.8e-08 61.2 72 36.1
Migut.M01403 Erythranthe guttata HOM05D002095 ORTHO05D002058 4.9e-08 60.8 65 44.6
PGSC0003DMG400008462 Solanum tuberosum HOM05D002095 ORTHO05D002058 4.9e-08 60.8 71 38.0
Hma1.2p1_0657F.1_g197090 Hydrangea macrophylla HOM05D002095 ORTHO05D002058 6.5e-08 60.5 71 38.0
arahy.Tifrunner.gnm1.ann1.WNC7YQ Arachis hypogaea HOM05D002095 ORTHO05D002058 8.4e-08 60.1 72 37.5
arahy.Tifrunner.gnm1.ann1.YREA25 Arachis hypogaea HOM05D002095 ORTHO05D002058 8.4e-08 60.1 72 37.5
CAN.G449.14 Capsicum annuum HOM05D002095 ORTHO05D002058 8.4e-08 60.1 68 39.7
Lj6g0028088 Lotus japonicus HOM05D002095 ORTHO05D002058 8.4e-08 60.1 70 37.1
TWI38G0020 Tripterygium wilfordii HOM05D002095 ORTHO05D002058 8.4e-08 60.1 71 42.3
Sc17g0007780 Simmondsia chinensis HOM05D002095 ORTHO05D002058 1.4e-07 59.3 71 38.0
Sopen10g032940 Solanum pennellii HOM05D002095 ORTHO05D002058 1.4e-07 59.3 72 38.9
arahy.Tifrunner.gnm1.ann1.M240R0 Arachis hypogaea HOM05D002095 ORTHO05D002058 2.5e-07 58.5 72 40.3
arahy.Tifrunner.gnm1.ann1.U26HEC Arachis hypogaea HOM05D002095 ORTHO05D002058 2.5e-07 58.5 72 40.3
MD10G1332500 Malus domestica HOM05D002095 ORTHO05D002058 2.5e-07 58.5 68 38.2
Rhsim02G0099700 Rhododendron simsii HOM05D002095 ORTHO05D002058 2.5e-07 58.5 66 40.9
Rhsim02G0101000 Rhododendron simsii HOM05D002095 ORTHO05D002058 2.5e-07 58.5 66 40.9
Solyc10g083470.2 Solanum lycopersicum HOM05D002095 ORTHO05D002058 2.5e-07 58.5 72 37.5
Psat4g004840 Pisum sativum HOM05D002095 ORTHO05D002058 4.2e-07 57.8 72 36.1
Solyc05g054080.3 Solanum lycopersicum HOM05D002095 ORTHO05D002058 4.2e-07 57.8 71 36.6
Sopen05g032570 Solanum pennellii HOM05D002095 ORTHO05D002058 4.2e-07 57.8 71 36.6
Ca_21042_v3 Cicer arietinum L. HOM05D002095 ORTHO05D002058 5.5e-07 57.4 72 36.1
HanXRQChr16g0516591 Helianthus annuus HOM05D002095 ORTHO05D002058 5.5e-07 57.4 72 37.5
Lsat_1_v5_gn_4_61921 Lactuca sativa HOM05D002095 ORTHO05D002058 5.5e-07 57.4 72 37.5
CiPaw.10G078500 Carya illinoinensis HOM05D002095 ORTHO05D002058 7.1e-07 57.0 71 39.4
Oeu007170.1 Olea europaea HOM05D002095 ORTHO05D002058 7.1e-07 57.0 71 36.6
PGSC0003DMG400025671 Solanum tuberosum HOM05D002095 ORTHO05D002058 7.1e-07 57.0 81 35.8
PGSC0003DMG400028257 Solanum tuberosum HOM05D002095 ORTHO05D002058 9.3e-07 56.6 72 37.5
Sopen09g001140 Solanum pennellii HOM05D002095 ORTHO05D002058 1.2e-06 56.2 81 34.6
unitig_32.g11053 Utricularia gibba HOM05D002095 ORTHO05D002058 1.6e-06 55.8 65 41.5
Mapoly0036s0010 Marchantia polymorpha HOM05D002095 ORTHO05D002058 2.1e-06 55.5 67 40.3
AUR62012798 Chenopodium quinoa HOM05D002095 ORTHO05D002058 2.7e-06 55.1 72 34.7
Medtr4g133120 Medicago truncatula HOM05D002095 ORTHO05D002058 2.7e-06 55.1 72 37.5
Lj6g0015945 Lotus japonicus HOM05D002095 ORTHO05D002058 3.5e-06 54.7 70 32.9
Lj6g0010938 Lotus japonicus HOM05D002095 ORTHO05D002058 6.0e-06 53.9 64 37.5
Lalb_Chr18g0056991 Lupinus albus HOM05D002095 ORTHO05D002058 6.0e-06 53.9 67 35.8
MD05G1358400 Malus domestica HOM05D002095 ORTHO05D002058 6.0e-06 53.9 68 38.2
PSO210G7368 Papaver somniferum HOM05D002095 ORTHO05D002058 6.0e-06 53.9 70 38.6
Sed0005989 Sechium edule HOM05D002095 ORTHO05D002058 6.0e-06 53.9 66 37.9


User provided reference genes

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