Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 2.9e-171 605.1 308 100.0
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 3.1e-136 488.8 308 80.2
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 1.2e-135 486.9 308 80.5
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 1.7e-134 483.0 307 79.5
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 2.9e-134 482.3 308 79.9
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 3.2e-133 478.8 308 79.2
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 7.0e-133 477.6 308 78.2
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 9.2e-133 477.2 309 78.0
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 1.2e-132 476.9 308 78.9
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 2.7e-132 475.7 308 78.2
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 7.8e-132 474.2 308 79.2
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 9.5e-130 467.2 308 77.6
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 6.4e-126 454.5 301 78.7
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 1.4e-125 453.4 303 77.9
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 3.9e-123 445.3 297 77.8
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 1.6e-113 413.3 302 70.5
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 7.6e-111 404.4 305 67.5
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 9.9e-111 404.1 289 70.6
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.2e-108 397.1 310 65.8
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 2.1e-108 396.4 306 65.7
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 3.5e-108 395.6 311 66.6
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 4.6e-108 395.2 298 66.1
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 6.0e-108 394.8 305 66.2
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 1.3e-107 393.7 296 67.2
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 1.7e-107 393.3 301 66.1
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 2.3e-107 392.9 297 67.7
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 3.0e-107 392.5 309 65.0
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 3.9e-107 392.1 301 65.1
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 3.9e-107 392.1 301 65.1
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 5.1e-107 391.7 303 66.3
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 1.9e-106 389.8 301 65.4
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 3.3e-106 389.0 293 67.6
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 3.3e-106 389.0 299 65.6
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 4.3e-106 388.7 299 65.2
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 7.3e-106 387.9 310 64.5
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 1.3e-105 387.1 297 65.3
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 1.6e-105 386.7 302 65.9
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 1.6e-105 386.7 297 67.3
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 2.1e-105 386.3 309 64.1
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 2.1e-105 386.3 295 64.7
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 2.1e-105 386.3 298 65.1
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 3.6e-105 385.6 293 64.8
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 6.2e-105 384.8 315 63.8
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 8.1e-105 384.4 299 64.9
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 1.1e-104 384.0 301 64.8
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 1.4e-104 383.6 290 66.6
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 1.4e-104 383.6 299 64.9
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.8e-104 383.3 309 63.4
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 1.8e-104 383.3 301 64.5
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 3.1e-104 382.5 300 65.3
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 3.1e-104 382.5 302 63.2
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 4.0e-104 382.1 297 65.0
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 9.0e-104 380.9 297 66.3
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 9.0e-104 380.9 302 64.9
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 1.2e-103 380.6 310 62.9
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 3.4e-103 379.0 292 66.4
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 3.4e-103 379.0 301 63.1
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 7.6e-103 377.9 340 59.4
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 9.9e-103 377.5 293 65.2
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 1.7e-102 376.7 302 62.9
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 4.9e-102 375.2 311 61.4
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 6.4e-102 374.8 289 65.1
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 2.4e-101 372.9 292 64.4
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 9.3e-101 370.9 308 62.3
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.6e-100 370.2 285 65.6
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 3.0e-99 365.9 308 62.7
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 5.1e-99 365.2 310 61.0
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 8.7e-99 364.4 306 62.1
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 1.9e-98 363.2 309 63.1
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 9.6e-98 360.9 294 61.2
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 1.6e-97 360.1 297 61.6
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 2.1e-97 359.8 285 66.3
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 3.7e-97 359.0 296 60.5
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 6.2e-97 358.2 298 59.4
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 8.1e-97 357.8 295 63.7
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 7.6e-95 351.3 292 61.3
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 6.4e-94 348.2 305 59.0
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 1.1e-93 347.4 299 59.5
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 5.5e-93 345.1 305 60.3
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 2.1e-92 343.2 287 62.0
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 2.7e-92 342.8 306 61.4
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 2.7e-92 342.8 292 61.0
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 4.6e-92 342.0 314 57.6
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 6.0e-92 341.7 297 60.3
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 6.0e-92 341.7 294 62.6
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 7.9e-92 341.3 300 60.0
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 7.9e-92 341.3 293 59.4
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 3.9e-91 339.0 284 61.6
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 8.7e-91 337.8 309 58.9
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 4.3e-90 335.5 296 58.4
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 2.1e-89 333.2 299 58.5
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 1.1e-88 330.9 319 56.1
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 2.0e-87 326.6 277 60.6
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 1.9e-85 320.1 336 53.3
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 4.2e-85 318.9 281 56.9
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 5.5e-85 318.5 293 53.9
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 5.1e-83 312.0 278 57.2
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 6.7e-83 311.6 339 52.8
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 1.8e-80 303.5 315 51.1
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 5.3e-80 302.0 307 53.7
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 3.6e-76 289.3 385 45.5
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 2.5e-69 266.5 314 47.8
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 3.6e-68 262.7 247 57.9
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 7.2e-61 238.4 206 62.1
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 1.2e-60 237.7 201 61.2
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 6.1e-60 235.3 304 44.4
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 4.4e-58 229.2 301 46.5
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 2.8e-57 226.5 198 58.6
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 4.1e-56 222.6 334 40.7
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 1.7e-54 217.2 155 67.1
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 2.1e-52 210.3 173 61.8
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 3.5e-47 193.0 216 50.5
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 7.2e-45 185.3 206 54.9
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 2.3e-35 153.7 107 69.2
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 7.8e-31 138.7 80 85.0
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 7.8e-31 138.7 80 85.0
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 1.3e-30 137.9 363 30.0
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 1.2e-26 124.8 343 29.2
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 4.9e-25 119.4 98 60.2
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.4e-24 117.9 109 56.0
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 3.0e-22 110.2 291 30.6
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 1.6e-20 104.4 113 55.8
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 1.4e-19 101.3 66 69.7
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 1.2e-15 88.2 52 78.8
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 1.3e-14 84.7 83 57.8
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 3.0e-14 83.6 83 56.6
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 3.0e-14 83.6 83 56.6
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 3.9e-14 83.2 91 49.5
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 1.9e-13 80.9 80 57.5
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 2.3e-11 73.9 102 38.2
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 5.2e-11 72.8 70 52.9
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 6.8e-11 72.4 43 74.4
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 5.4e-08 62.8 64 53.1


User provided reference genes

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