Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 1.2e-167 593.2 320 100.0
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 3.6e-140 501.9 320 81.9
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 3.6e-140 501.9 320 85.0
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.4e-139 500.0 320 85.9
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 3.1e-139 498.8 321 84.4
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 3.1e-139 498.8 321 84.4
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 3.1e-139 498.8 320 85.9
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 5.8e-138 494.6 321 83.8
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 1.9e-136 489.6 297 85.5
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 2.4e-136 489.2 321 83.8
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.2e-132 476.9 297 84.2
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.2e-132 476.9 297 84.2
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 5.2e-131 471.5 298 80.9
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 1.5e-130 469.9 298 80.5
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 2.6e-130 469.2 297 81.1
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.3e-129 466.8 322 81.1
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.9e-129 465.7 320 78.1
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 3.2e-128 462.2 320 78.4
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 7.1e-128 461.1 320 76.2
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 1.6e-127 459.9 297 78.8
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 2.1e-127 459.5 320 77.2
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 2.7e-127 459.1 299 79.6
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.7e-127 459.1 321 77.6
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 2.7e-127 459.1 320 77.2
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 3.5e-127 458.8 320 75.0
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 6.0e-127 458.0 320 76.9
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 7.8e-127 457.6 320 75.0
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.3e-126 456.8 320 79.7
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 1.7e-126 456.4 297 77.4
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.7e-126 456.4 320 77.5
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.3e-126 456.1 320 75.0
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 3.0e-126 455.7 321 78.5
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 3.9e-126 455.3 297 78.8
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 5.1e-126 454.9 321 78.2
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 5.1e-126 454.9 323 78.9
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 6.6e-126 454.5 320 79.4
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.5e-125 453.4 297 78.5
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 2.5e-125 452.6 297 78.8
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 5.6e-125 451.4 320 72.5
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 1.3e-124 450.3 297 78.8
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 1.6e-124 449.9 320 74.1
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 1.6e-124 449.9 320 74.1
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 2.1e-124 449.5 297 77.1
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 2.1e-124 449.5 297 77.1
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 3.6e-124 448.7 297 75.4
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 3.6e-124 448.7 298 78.2
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 6.2e-124 448.0 297 78.1
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.1e-123 447.2 298 76.2
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.4e-123 446.8 321 72.6
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 6.9e-123 444.5 298 76.5
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 6.9e-123 444.5 320 74.1
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 6.9e-123 444.5 299 77.3
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.2e-122 443.7 298 76.5
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 1.5e-122 443.4 298 76.2
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 2.6e-122 442.6 320 76.2
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 2.6e-122 442.6 299 75.3
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 7.6e-122 441.0 298 75.5
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 9.9e-122 440.7 347 72.3
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 9.9e-122 440.7 320 72.2
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 9.9e-122 440.7 320 71.6
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 1.7e-121 439.9 296 74.3
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 1.9e-120 436.4 298 75.5
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 1.9e-120 436.4 292 76.0
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 2.4e-120 436.0 298 74.2
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 3.2e-120 435.6 323 76.2
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 9.3e-120 434.1 352 70.5
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 1.6e-119 433.3 298 73.8
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 3.5e-119 432.2 321 76.6
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 6.0e-119 431.4 320 73.8
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 6.0e-119 431.4 320 71.6
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.8e-118 429.9 321 74.8
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.1e-117 427.2 313 71.6
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 1.5e-117 426.8 298 76.2
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 5.6e-117 424.9 311 71.4
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 7.4e-117 424.5 297 73.1
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 9.6e-117 424.1 320 72.8
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.6e-116 423.3 298 74.2
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 1.6e-116 423.3 318 69.2
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 1.6e-116 423.3 363 63.6
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 2.8e-116 422.5 320 70.9
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 2.8e-116 422.5 323 75.2
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 8.1e-116 421.0 320 69.1
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 1.1e-115 420.6 318 68.6
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 1.4e-115 420.2 300 72.3
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 3.1e-115 419.1 334 67.1
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 4.0e-115 418.7 307 73.0
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 6.9e-115 417.9 297 73.1
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 1.5e-114 416.8 339 67.0
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.5e-114 416.8 321 67.6
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 4.5e-114 415.2 306 70.9
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 4.5e-114 415.2 320 70.9
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 7.6e-114 414.5 300 71.0
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 1.7e-113 413.3 307 71.0
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 4.9e-113 411.8 301 71.4
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 4.9e-113 411.8 301 71.4
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 8.4e-113 411.0 347 68.0
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 2.7e-111 406.0 298 69.1
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.6e-111 405.2 289 68.2
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 2.3e-110 402.9 302 68.9
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 5.1e-110 401.7 302 68.5
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 6.7e-110 401.4 360 66.9
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 4.3e-109 398.7 300 68.7
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 7.4e-109 397.9 320 67.5
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 9.0e-107 391.0 296 70.9
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.2e-106 390.6 298 66.4
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 2.9e-105 386.0 291 69.4
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 6.3e-100 368.2 258 79.8
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 2.4e-99 366.3 273 77.3
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 5.9e-98 361.7 257 73.9
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.7e-97 360.1 288 62.8
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.1e-93 347.4 300 63.7
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 3.3e-93 345.9 248 72.6
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 4.3e-93 345.5 279 65.6
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 1.3e-89 334.0 298 61.7
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.4e-88 330.5 322 60.6
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.4e-88 330.5 322 59.9
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.0e-86 324.3 312 57.4
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 2.3e-86 323.2 307 58.0
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 6.7e-86 321.6 229 72.5
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.3e-85 319.3 264 61.7
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 3.3e-85 319.3 304 56.6
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 6.9e-83 311.6 291 58.1
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 9.1e-83 311.2 319 54.9
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.4e-78 297.4 270 58.5
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 2.8e-76 289.7 181 80.7
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.0e-75 285.0 226 63.3
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 2.6e-74 283.1 179 77.7
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 6.5e-73 278.5 222 68.0
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 1.9e-72 276.9 289 51.6
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 4.4e-69 265.8 181 74.6
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 3.2e-64 249.6 191 66.5
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 5.5e-64 248.8 244 59.8
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.8e-59 233.8 147 79.6
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.7e-44 184.1 117 79.5
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 6.4e-44 182.2 116 79.3
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.0e-41 174.9 94 87.2
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 1.1e-40 171.4 129 68.2
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 4.4e-37 159.5 101 76.2
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 9.8e-37 158.3 116 69.0
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 1.3e-36 157.9 147 65.3
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 1.9e-35 154.1 118 72.0
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 2.4e-35 153.7 105 78.1
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 3.2e-35 153.3 186 49.5
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 4.1e-35 152.9 118 71.2
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 4.1e-35 152.9 118 71.2
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 2.7e-34 150.2 118 70.3
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 3.5e-34 149.8 129 62.0
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 3.5e-34 149.8 289 35.6
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 1.3e-33 147.9 118 70.3
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 8.6e-33 145.2 79 86.1
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 1.1e-32 144.8 118 69.5
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 1.5e-32 144.4 118 69.5
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.9e-32 144.1 101 83.2
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 3.4e-29 133.3 290 31.4
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 2.9e-28 130.2 106 78.3
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 1.4e-27 127.9 66 90.9
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.9e-27 127.5 87 75.9
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 3.2e-27 126.7 155 46.5
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 2.1e-26 124.0 155 47.1
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 6.0e-26 122.5 83 77.1
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 5.6e-24 115.9 273 31.5
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 2.4e-22 110.5 244 34.4
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.6e-21 107.1 282 29.4
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.9e-16 90.9 46 95.7
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 3.4e-13 80.1 44 86.4
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 8.4e-12 75.5 45 73.3


User provided reference genes

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