Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 0.0e+00 1744.2 914 100.0
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 0.0e+00 1113.6 905 69.4
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 0.0e+00 1109.4 901 68.7
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 0.0e+00 1090.9 906 66.8
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 0.0e+00 1080.1 905 67.4
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 1.5e-308 1062.8 905 67.3
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 2.8e-302 1042.0 908 63.8
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 5.6e-295 1017.7 917 62.6
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 1.1e-293 1013.4 906 62.8
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 1.4e-293 1013.1 906 62.9
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 1.4e-293 1013.1 906 62.8
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 1.6e-289 999.6 907 62.5
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 4.3e-287 991.5 928 61.1
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 5.5e-226 788.5 742 58.9
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 9.4e-226 787.7 962 48.5
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 6.6e-219 765.0 748 57.6
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 1.1e-218 764.2 938 49.6
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.5e-218 763.1 547 70.7
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 2.8e-217 759.6 772 56.9
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.8e-216 756.9 940 49.1
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 2.6e-215 753.1 962 48.4
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 1.3e-214 750.7 950 48.1
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 4.6e-212 742.3 948 47.3
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.5e-210 736.5 948 47.2
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 2.8e-209 733.0 947 47.7
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 1.4e-208 730.7 948 46.9
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 8.9e-208 728.0 943 48.0
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 9.8e-207 724.5 973 47.3
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 2.9e-206 723.0 769 55.1
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 2.4e-205 719.9 962 47.5
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 1.3e-203 714.1 1034 45.0
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 6.2e-201 705.3 965 46.8
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 1.8e-200 703.7 939 45.6
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 2.3e-200 703.4 951 45.5
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 5.2e-200 702.2 940 46.2
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 8.9e-200 701.4 951 46.5
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.4e-199 699.5 839 50.7
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 2.2e-198 696.8 968 46.1
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.2e-196 691.0 947 45.8
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 1.6e-196 690.6 948 46.6
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 2.7e-196 689.9 970 45.4
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 2.5e-194 683.3 944 46.1
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.7e-190 670.6 967 44.0
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 9.2e-189 664.8 955 45.1
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 1.2e-188 664.5 955 44.5
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.5e-188 662.9 1005 44.1
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 4.6e-188 662.5 963 44.1
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 6.0e-188 662.1 955 45.0
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 1.7e-187 660.6 963 44.5
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 3.0e-187 659.8 974 43.6
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 5.1e-187 659.1 843 48.5
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 6.6e-187 658.7 1004 43.9
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 1.5e-186 657.5 847 49.0
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 7.3e-186 655.2 926 45.2
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 2.8e-185 653.3 956 43.7
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 4.7e-185 652.5 895 46.3
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 1.1e-184 651.4 550 62.7
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.1e-184 651.4 953 43.7
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.8e-184 650.6 934 44.3
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.4e-184 650.2 1010 42.9
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 2.0e-183 647.1 967 43.8
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.3e-182 644.4 1007 42.7
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 2.2e-182 643.7 1007 42.6
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 8.4e-182 641.7 956 44.0
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 3.5e-180 636.3 956 43.5
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.0e-179 633.3 1030 42.0
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 8.7e-179 631.7 934 44.6
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 8.7e-179 631.7 939 43.8
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 2.8e-177 626.7 958 43.4
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 5.3e-176 622.5 700 53.0
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 3.8e-174 616.3 938 43.4
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 8.4e-174 615.1 950 44.7
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 4.2e-173 612.8 939 42.8
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 5.4e-173 612.5 865 46.6
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 1.6e-172 610.9 950 44.6
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 3.9e-171 606.3 982 41.8
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 1.1e-170 604.7 760 47.5
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 1.9e-170 604.0 972 41.4
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 3.3e-170 603.2 928 43.2
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 7.4e-170 602.1 962 42.6
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 6.9e-168 595.5 807 46.2
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 7.6e-167 592.0 929 43.1
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 3.8e-166 589.7 910 42.9
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 1.2e-164 584.7 973 40.4
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 1.0e-163 581.6 933 41.3
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 6.7e-163 578.9 932 42.6
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 1.1e-162 578.2 984 39.7
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 1.5e-162 577.8 948 42.0
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.8e-161 573.5 954 41.4
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.8e-160 570.9 930 41.3
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 5.8e-159 565.8 1083 37.9
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 1.0e-155 555.1 1006 39.8
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 1.5e-154 551.2 997 39.9
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 2.9e-150 537.0 931 40.2
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 3.8e-150 536.6 783 45.3
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 6.5e-150 535.8 811 43.4
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 6.5e-150 535.8 915 40.8
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 1.1e-149 535.0 1011 37.6
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.4e-149 534.6 917 40.2
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 3.2e-149 533.5 1011 38.7
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 9.3e-149 531.9 1015 37.4
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 2.3e-147 527.3 912 40.0
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.1e-146 525.0 900 40.2
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 5.3e-144 516.2 1046 35.9
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 2.9e-142 510.4 915 39.7
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.4e-141 508.1 897 39.2
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 1.9e-141 507.7 926 38.1
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.2e-140 505.0 963 38.7
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 2.0e-138 497.7 946 37.3
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 2.6e-135 487.3 569 48.9
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 2.6e-135 487.3 560 49.3
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 4.5e-135 486.5 591 48.1
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 1.0e-134 485.3 569 49.9
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 7.2e-133 479.2 941 37.6
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 7.2e-133 479.2 1003 37.0
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 7.7e-127 459.1 799 39.7
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.8e-120 438.0 909 37.0
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 7.0e-120 436.0 682 41.5
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 2.7e-116 424.1 762 38.1
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 1.2e-114 418.7 747 38.0
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 8.8e-107 392.5 838 37.5
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 1.5e-101 375.2 385 54.8
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 1.2e-100 372.1 488 45.5
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 8.0e-100 369.4 531 42.6
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 6.8e-99 366.3 1026 31.2
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.3e-94 352.1 601 41.4
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 2.9e-89 334.3 1012 30.2
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 2.0e-87 328.2 1012 29.9
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 4.0e-83 313.9 341 52.2
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 6.8e-83 313.2 335 51.6
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 3.3e-77 294.3 522 41.4
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 5.2e-75 287.0 1030 28.8
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-74 285.4 1066 27.3
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.4e-72 278.9 606 36.6
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.4e-72 278.1 340 56.8
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.8e-59 235.3 690 29.6
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 9.9e-58 229.6 244 51.2
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 2.2e-57 228.4 254 51.2
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 4.9e-57 227.3 291 45.4
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.0e-50 205.3 237 46.4
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 1.1e-43 183.0 293 45.7
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 6.0e-39 167.2 354 34.7
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.3e-38 165.2 184 52.7
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 2.8e-36 158.3 325 40.3
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 4.1e-35 154.5 325 39.4
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.6e-34 151.8 300 39.7
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.9e-33 148.3 229 41.9
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 4.6e-31 141.0 204 41.2
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 1.0e-30 139.8 425 34.1
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 2.2e-28 132.1 477 31.0
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 2.0e-26 125.6 186 42.5
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.6e-23 115.9 171 38.6
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 6.1e-23 114.0 174 48.3
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.1e-21 109.8 237 34.6
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 7.4e-21 107.1 132 48.5
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.2e-20 105.5 120 51.7
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 6.3e-20 104.0 194 39.2
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 9.1e-19 100.1 227 33.5
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 7.7e-18 97.1 542 24.7
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 1.3e-17 96.3 157 36.9
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 3.8e-17 94.7 100 55.0
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.1e-16 93.2 165 40.6
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 9.4e-16 90.1 143 35.7
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 2.0e-13 82.4 92 51.1
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.4e-11 76.3 126 35.7
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 5.3e-11 74.3 116 41.4
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 1.2e-10 73.2 81 45.7
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 2.0e-10 72.4 72 48.6
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 2.0e-10 72.4 72 48.6
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 3.5e-10 71.6 163 35.0
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 3.5e-10 71.6 92 42.4
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 7.7e-10 70.5 73 53.4
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 1.0e-09 70.1 94 36.2
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 1.1e-08 66.6 174 32.8
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 7.2e-08 63.9 188 32.4
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.0e-06 60.1 172 29.7
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 4.0e-06 58.2 52 61.5


User provided reference genes

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