Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 3.4e-178 628.2 325 100.0
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 4.3e-149 531.6 316 86.7
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 8.2e-148 527.3 318 84.9
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 4.1e-147 525.0 315 85.1
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 6.9e-147 524.2 317 84.5
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 2.9e-145 518.8 320 83.8
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-144 516.9 317 84.2
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 1.9e-144 516.2 317 84.2
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 2.5e-144 515.8 317 83.9
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 2.5e-144 515.8 317 84.2
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 9.4e-144 513.8 321 83.8
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 2.1e-143 512.7 317 83.6
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 2.7e-143 512.3 320 83.4
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 2.7e-143 512.3 320 83.4
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 3.6e-143 511.9 320 83.8
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 4.3e-141 505.0 326 81.3
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 7.4e-141 504.2 320 82.2
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 7.4e-141 504.2 320 82.2
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 1.0e-137 493.8 320 80.9
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.9e-136 489.6 324 80.6
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 9.4e-136 487.3 338 76.6
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 3.1e-131 472.2 337 74.5
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 7.7e-130 467.6 338 73.7
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.7e-129 466.5 319 75.9
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.5e-129 464.5 319 75.5
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 6.5e-129 464.5 319 75.9
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 2.7e-127 459.1 323 73.7
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 3.0e-126 455.7 327 71.6
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 7.5e-125 451.1 338 70.7
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 3.7e-124 448.7 311 74.6
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 1.4e-123 446.8 317 72.6
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 5.9e-122 441.4 314 72.0
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 1.5e-120 436.8 316 73.1
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 2.5e-120 436.0 318 71.4
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 4.2e-120 435.3 316 72.8
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 7.2e-120 434.5 315 72.7
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 9.4e-120 434.1 316 72.8
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 3.6e-119 432.2 305 73.8
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 4.7e-119 431.8 293 75.1
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 1.8e-118 429.9 292 74.3
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 6.8e-118 427.9 317 70.0
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 1.2e-117 427.2 329 68.7
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 1.5e-117 426.8 292 73.6
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 2.0e-117 426.4 311 69.8
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 2.6e-117 426.0 324 69.4
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.6e-117 426.0 314 71.0
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 3.4e-117 425.6 316 69.0
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 3.4e-117 425.6 315 70.2
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 9.8e-117 424.1 316 70.3
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.3e-116 423.7 308 70.8
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.7e-116 423.3 319 70.2
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 2.2e-116 422.9 308 69.2
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 4.8e-116 421.8 307 70.4
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 1.8e-115 419.9 331 66.2
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 2.4e-115 419.5 326 66.6
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 4.1e-115 418.7 288 73.3
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 5.4e-115 418.3 331 67.4
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 9.1e-115 417.5 318 67.3
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 1.2e-114 417.2 346 65.0
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 1.6e-114 416.8 313 68.7
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 2.0e-114 416.4 330 67.0
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 4.5e-114 415.2 316 69.3
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.3e-113 413.7 261 79.3
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 3.8e-113 412.1 307 68.1
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 8.5e-113 411.0 312 67.6
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 1.5e-112 410.2 316 66.1
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.9e-112 409.8 293 68.9
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 2.5e-112 409.5 303 69.0
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 2.5e-112 409.5 320 67.2
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 3.2e-112 409.1 309 68.9
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 3.2e-112 409.1 320 68.1
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 5.5e-112 408.3 319 70.2
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 7.2e-112 407.9 309 67.0
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 1.6e-111 406.8 318 67.3
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 1.6e-111 406.8 309 67.0
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 4.7e-111 405.2 316 67.1
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 8.0e-111 404.4 320 65.9
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 1.4e-110 403.7 292 68.5
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.4e-110 403.7 322 64.0
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 1.4e-110 403.7 361 61.8
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.8e-110 403.3 322 64.0
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 1.8e-110 403.3 322 64.0
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 2.3e-110 402.9 291 70.4
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 2.3e-110 402.9 320 64.4
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 3.0e-110 402.5 326 65.0
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 5.2e-110 401.7 320 65.6
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 6.8e-110 401.4 316 70.6
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 8.8e-110 401.0 308 66.6
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 8.8e-110 401.0 322 63.7
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 2.0e-109 399.8 320 65.9
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 2.0e-109 399.8 319 68.3
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.6e-109 399.4 290 69.0
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 4.4e-109 398.7 316 66.5
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 7.5e-109 397.9 320 69.7
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 1.7e-108 396.7 317 65.9
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.2e-108 396.4 288 68.8
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 2.2e-108 396.4 324 63.3
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 2.2e-108 396.4 320 64.7
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 3.7e-108 395.6 318 64.2
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 6.3e-108 394.8 324 64.2
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 8.3e-108 394.4 294 66.0
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 2.4e-107 392.9 342 61.7
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 4.1e-107 392.1 386 57.5
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 4.1e-107 392.1 324 63.3
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 5.4e-107 391.7 316 63.9
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 5.4e-107 391.7 334 63.5
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 1.2e-106 390.6 325 63.1
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 4.5e-106 388.7 323 62.5
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 5.9e-106 388.3 314 64.0
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.0e-105 387.5 304 64.1
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 1.7e-105 386.7 319 63.0
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 2.9e-105 386.0 289 67.5
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 8.6e-105 384.4 412 53.6
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.5e-104 383.6 319 62.1
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 3.3e-104 382.5 329 61.4
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 9.5e-104 380.9 285 67.0
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 1.0e-102 377.5 311 63.0
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 4.0e-102 375.6 310 64.5
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 8.9e-102 374.4 337 61.4
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 1.5e-101 373.6 333 60.7
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 1.5e-101 373.6 309 64.4
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 5.7e-101 371.7 320 60.3
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 1.2e-98 364.0 298 66.4
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 1.3e-97 360.5 288 64.6
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 3.0e-97 359.4 376 55.9
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 5.2e-94 348.6 320 59.4
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 3.4e-93 345.9 265 71.3
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 9.8e-93 344.4 306 60.8
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 9.8e-93 344.4 323 55.7
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 1.9e-91 340.1 347 55.6
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 2.5e-88 329.7 222 81.1
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 5.6e-88 328.6 328 58.2
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 9.5e-88 327.8 323 54.2
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 2.0e-85 320.1 313 56.2
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 4.4e-85 318.9 257 70.4
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.3e-81 307.4 292 56.2
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 8.6e-81 304.7 237 71.7
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 8.6e-81 304.7 338 52.4
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 8.1e-79 298.1 306 52.9
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 1.1e-72 277.7 160 85.0
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 1.2e-71 274.2 313 50.5
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 8.1e-71 271.6 252 54.8
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 2.4e-70 270.0 289 51.2
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 1.7e-68 263.8 176 81.2
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 1.6e-63 247.3 166 73.5
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.1e-63 246.9 180 70.6
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 6.0e-58 228.8 322 46.0
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.9e-51 207.2 143 76.9
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 3.1e-46 189.9 138 78.3
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 5.8e-45 185.7 304 39.5
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 1.0e-44 184.9 185 58.9
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 8.2e-39 165.2 160 60.6
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.5e-37 161.0 154 63.0
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 7.9e-34 148.7 82 84.1
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 1.1e-32 144.8 291 37.1
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.5e-29 134.4 114 65.8
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 1.8e-25 120.9 99 67.7
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 2.0e-24 117.5 318 31.4
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.3e-20 104.8 108 49.1
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 3.8e-20 103.2 78 61.5
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 5.2e-17 92.8 89 56.2
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 6.5e-12 75.9 61 67.2
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.0e-08 64.3 43 69.8
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 5.7e-08 62.8 38 81.6
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 7.5e-08 62.4 56 50.0
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 7.5e-08 62.4 63 47.6


User provided reference genes

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