Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 4050.0 2143 100.0
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 3415.9 2151 84.0
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 3413.2 2151 84.0
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 3384.7 2149 83.4
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 3345.4 2151 82.1
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 3340.4 2151 81.9
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 3316.6 2153 81.7
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 3216.0 2155 80.5
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 3211.4 2150 80.3
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 3208.7 2148 80.3
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 3181.3 2169 79.3
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 3167.1 2166 79.2
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 2959.5 2164 73.8
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2146.7 2221 55.1
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2134.0 2209 55.8
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2120.5 2221 54.9
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2094.7 2201 56.2
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2074.7 2212 54.8
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2060.4 2220 55.0
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2041.5 2216 54.2
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2025.0 2244 52.9
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2021.5 2222 53.2
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1998.8 2216 52.5
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 1998.4 2223 52.7
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 1988.8 2210 52.9
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 1969.5 2264 52.2
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 1966.4 2218 53.0
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 1962.6 2215 52.5
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 1955.6 2216 51.8
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 1940.2 2227 51.9
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1936.0 2245 51.2
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1919.1 2220 51.7
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1917.5 2271 50.6
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1916.4 2276 50.2
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 1911.7 2240 51.5
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1900.2 2232 50.8
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 1896.7 2230 51.0
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1890.9 2291 49.5
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 1885.9 2212 51.1
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1877.4 2266 51.3
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1875.5 2231 50.4
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1873.2 2231 49.8
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 1872.8 2230 50.4
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1870.1 2246 51.0
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1864.0 2230 50.0
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1850.9 2226 49.6
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 1849.7 2228 49.7
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 1842.0 2236 50.0
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 1840.1 2212 50.5
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 1828.9 2273 49.7
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1828.1 2328 48.3
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1815.0 2013 53.8
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 1810.8 2186 49.5
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1807.7 2009 53.7
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 1794.2 2201 48.8
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 1788.9 2215 48.9
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 1773.8 2218 48.2
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 1725.3 2230 47.8
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 1722.2 2312 46.8
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 1718.7 2230 47.6
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1691.8 2246 47.4
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 1689.5 2172 47.9
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1687.2 2255 47.6
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1679.5 2133 48.8
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 1677.9 2247 47.0
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1677.1 2252 47.5
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1674.8 1724 55.7
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 1674.4 2290 47.2
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 1671.4 2254 46.2
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 1652.5 2106 48.6
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1645.9 2202 46.9
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1641.3 2200 47.0
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1639.0 2127 48.0
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1634.4 2214 46.6
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1622.4 1927 50.7
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1619.4 2205 47.1
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1607.4 2213 47.0
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1581.6 2104 48.3
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1558.5 2126 47.3
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1556.6 2160 46.5
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1548.9 2025 47.7
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1546.2 2029 49.0
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1516.1 2205 44.9
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1510.7 2095 46.3
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1499.6 1389 56.8
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1413.7 1396 55.7
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1410.2 1396 55.7
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1402.1 2362 40.8
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1396.7 1426 53.9
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1310.4 2203 40.2
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1293.5 2287 40.3
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1183.3 998 70.0
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1171.0 1260 50.8
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1142.9 1462 48.8
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1087.8 2193 36.4
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 3.2e-293 1013.1 1193 52.0
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 8.6e-278 961.8 1501 44.8
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 4.6e-271 939.5 1358 45.7
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 3.6e-268 929.9 1237 48.4
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 3.5e-247 860.1 1122 44.6
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 6.9e-227 792.7 1395 41.0
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 7.6e-226 789.3 826 54.6
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 4.7e-199 700.3 1317 37.7
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 7.7e-178 629.8 1711 30.3
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 6.8e-158 563.5 950 42.0
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.3e-153 548.5 491 59.7
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 8.7e-129 466.8 814 43.6
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 2.9e-124 451.8 954 39.3
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 1.4e-123 449.5 2203 26.4
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 1.2e-122 446.4 910 38.8
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 6.6e-121 440.7 1376 28.0
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 6.0e-114 417.5 420 54.5
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.6e-111 409.5 840 43.0
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 8.1e-111 407.1 840 42.9
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 1.4e-110 406.4 348 62.9
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.4e-107 396.4 1190 31.0
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.6e-95 356.3 649 38.4
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 2.9e-76 292.4 1881 22.8
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 2.9e-76 292.4 281 54.8
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 8.5e-68 264.2 216 62.0
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 7.2e-67 261.2 387 39.8
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 4.2e-59 235.3 225 55.6
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.1e-54 220.7 347 40.6
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.5e-53 215.7 163 66.9
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 3.8e-52 212.2 340 40.6
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 1.1e-51 210.7 263 51.7
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.0e-49 202.6 164 62.2
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 1.8e-46 193.4 195 67.2
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 6.6e-44 184.9 446 37.7
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 4.3e-43 182.2 153 59.5
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 7.3e-43 181.4 177 59.3
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 8.9e-41 174.5 460 38.5
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 1.0e-36 161.0 463 33.5
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 7.3e-35 154.8 207 51.7
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.4e-33 150.6 652 32.1
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.6e-32 146.4 112 65.2
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 2.2e-31 143.3 330 32.4
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 2.3e-28 133.3 117 59.0
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 8.6e-28 131.3 191 41.4
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 1.5e-27 130.6 169 50.9
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.1e-25 124.4 225 35.1
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.4e-25 124.0 329 33.1
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 5.8e-24 118.6 132 47.0
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 4.6e-21 109.0 68 75.0
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 1.2e-13 84.3 126 36.5
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 1.2e-13 84.3 124 46.0
BraA01t04438Z Brassica rapa HOM05D004426 ORTHO05D005417 3.1e-09 69.7 45 82.2
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 6.9e-09 68.6 57 57.9
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 2.6e-08 66.6 103 41.7
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 4.4e-08 65.9 109 41.3
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 4.9e-07 62.4 104 46.2
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 1.1e-06 61.2 45 71.1
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 3.2e-06 59.7 45 68.9
SHI25003 Sapria himalayana HOM05D004426 ORTHO05D002750 9.3e-06 58.2 97 34.0


User provided reference genes

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