Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 0.0e+00 1479.9 759 100.0
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 0.0e+00 1132.9 761 79.2
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 0.0e+00 1132.5 766 78.5
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 0.0e+00 1124.8 766 77.5
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 0.0e+00 1116.3 747 79.9
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 0.0e+00 1113.6 766 76.9
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 0.0e+00 1105.5 757 78.7
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 0.0e+00 1101.7 758 78.6
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 0.0e+00 1089.7 749 78.5
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 0.0e+00 1087.0 773 76.3
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 2.1e-311 1072.0 766 76.0
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 6.7e-310 1067.0 728 78.4
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 1.3e-300 1036.2 764 72.6
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 1.3e-281 973.0 642 80.4
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 2.6e-253 879.0 746 62.7
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 3.2e-251 872.1 742 62.7
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 3.9e-249 865.1 772 60.6
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 1.1e-248 863.6 775 60.1
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 4.7e-247 858.2 775 59.5
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 8.9e-246 854.0 745 61.2
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 3.2e-243 845.5 738 61.8
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 4.1e-243 845.1 764 60.5
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 7.1e-243 844.3 766 60.4
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 7.8e-242 840.9 779 59.3
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 3.9e-241 838.6 738 61.1
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 4.3e-240 835.1 733 62.5
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 5.6e-240 834.7 723 61.8
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 4.7e-239 831.6 777 60.1
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 4.7e-239 831.6 736 60.3
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 4.0e-238 828.6 736 60.2
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 3.8e-236 822.0 776 58.0
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 4.9e-236 821.6 756 58.5
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 9.2e-235 817.4 748 58.8
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 9.2e-235 817.4 719 60.4
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 5.6e-232 808.1 730 59.7
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 2.8e-231 805.8 782 58.7
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 6.2e-231 804.7 751 58.9
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 1.8e-230 803.1 736 59.1
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 2.4e-230 802.7 766 58.5
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 1.2e-229 800.4 764 59.3
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 3.4e-229 798.9 765 58.8
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 4.9e-228 795.0 776 57.5
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 3.5e-226 788.9 765 57.6
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 3.5e-226 788.9 734 58.7
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 4.6e-226 788.5 737 58.5
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 6.0e-226 788.1 737 58.3
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 6.0e-226 788.1 740 58.2
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 5.1e-225 785.0 737 58.2
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.1e-224 783.9 760 58.0
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 2.5e-224 782.7 762 56.4
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 1.6e-223 780.0 754 56.1
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 4.8e-223 778.5 736 56.7
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 3.4e-221 772.3 792 54.7
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 7.1e-219 764.6 771 54.1
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 1.3e-217 760.4 729 57.9
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 2.1e-215 753.1 713 57.8
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 4.8e-215 751.9 736 57.1
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 1.1e-214 750.7 710 57.0
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 1.8e-214 750.0 717 58.2
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 3.1e-214 749.2 736 56.0
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 7.6e-213 744.6 737 56.2
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 4.6e-210 735.3 792 51.0
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 8.7e-209 731.1 728 55.1
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 1.9e-208 729.9 698 59.3
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.3e-207 727.2 817 51.7
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 5.3e-206 721.8 825 51.3
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 1.2e-205 720.7 781 53.1
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 2.0e-205 719.9 766 53.3
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.8e-201 706.8 716 55.7
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 1.8e-198 696.8 762 53.1
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 9.0e-198 694.5 577 62.7
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 4.2e-195 685.6 726 53.4
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 4.2e-195 685.6 638 58.3
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.4e-190 669.8 725 52.4
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 2.2e-188 663.3 783 51.0
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 2.7e-186 656.4 629 57.7
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 9.7e-184 647.9 623 56.7
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 1.4e-182 644.0 707 51.2
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 1.8e-182 643.7 545 63.7
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 3.2e-179 632.9 765 50.1
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 9.7e-176 621.3 585 58.3
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 2.8e-175 619.8 719 49.7
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 1.6e-173 614.0 486 66.5
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 1.6e-170 604.0 577 57.2
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 1.1e-166 591.3 542 59.4
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 9.1e-166 588.2 743 44.7
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 5.5e-155 552.4 744 44.9
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 6.3e-151 538.9 436 63.5
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 5.4e-150 535.8 488 58.4
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 2.4e-142 510.4 750 40.5
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 5.2e-137 492.7 491 55.2
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 1.4e-129 468.0 417 61.4
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 7.5e-128 462.2 382 64.1
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.2e-125 454.9 416 58.9
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.9e-123 447.6 416 57.9
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 9.5e-123 445.3 454 53.7
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.1e-121 440.3 416 57.2
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 1.7e-119 434.5 809 38.3
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.7e-108 397.9 378 55.8
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.7e-108 397.9 711 37.1
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 3.1e-105 387.1 346 59.0
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 6.9e-105 386.0 758 36.1
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 2.2e-103 380.9 813 34.6
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 3.8e-95 353.6 359 53.5
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 3.1e-89 334.0 311 58.8
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.1e-86 325.5 352 50.6
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 3.3e-83 313.9 777 31.4
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.5e-64 250.8 266 53.8
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 5.9e-64 250.0 245 57.6
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 4.7e-61 240.4 323 44.6
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 7.4e-59 233.0 654 30.1
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 6.3e-58 229.9 253 50.2
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 1.4e-57 228.8 174 69.0
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 4.1e-57 227.3 206 59.7
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.7e-55 221.9 302 44.0
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 4.0e-52 210.7 176 63.6
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.4e-51 207.6 264 49.6
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 1.6e-48 198.7 200 54.5
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.7e-47 195.3 173 57.8
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 1.6e-45 188.7 191 51.8
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 3.0e-44 184.5 150 62.0
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 4.9e-26 124.0 137 51.1
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 8.3e-26 123.2 148 48.6
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 9.2e-25 119.8 141 51.1
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 9.2e-25 119.8 138 52.9
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 7.8e-24 116.7 157 47.8
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 1.6e-21 109.0 125 49.6
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.1e-21 108.6 128 48.4
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 3.0e-15 88.2 65 70.8
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 3.1e-12 78.2 51 68.6
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 6.8e-12 77.0 76 52.6
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 1.3e-10 72.8 81 51.9
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 4.6e-08 64.3 37 86.5


User provided reference genes

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